Wall clock time and date at job start Tue Mar 31 2020 11:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46779 * 2 1 4 4 C 1.50696 * 109.46922 * 119.99567 * 2 1 3 5 5 C 1.38243 * 119.98567 * 59.73305 * 4 2 1 6 6 C 1.38209 * 120.01112 * 179.72314 * 5 4 2 7 7 C 1.38355 * 119.98840 * 0.54117 * 6 5 4 8 8 Cl 1.73598 * 120.01653 * 179.70364 * 7 6 5 9 9 C 1.38353 * 119.97068 * 359.73137 * 7 6 5 10 10 C 1.38210 * 119.98866 * 359.97438 * 9 7 6 11 11 S 1.81400 * 109.47002 * 239.99957 * 2 1 3 12 12 O 1.42105 * 109.46788 * 171.38535 * 11 2 1 13 13 C 1.81395 * 103.00021 * 55.00066 * 11 2 1 14 14 C 1.53001 * 109.47015 * 179.97438 * 13 11 2 15 15 O 1.42906 * 109.47415 * 179.97438 * 14 13 11 16 16 C 1.42898 * 114.00232 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.46999 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00009 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99742 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99933 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99741 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47131 * 59.99900 * 21 19 17 23 23 H 1.48497 * 109.47158 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46975 * 299.99737 * 21 19 17 25 25 H 1.08996 * 109.46936 * 60.00152 * 1 2 3 26 26 H 1.09004 * 109.46779 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46879 * 300.00135 * 1 2 3 28 28 H 1.07999 * 119.98994 * 359.97438 * 5 4 2 29 29 H 1.08005 * 120.00915 * 180.26746 * 6 5 4 30 30 H 1.08001 * 120.00743 * 179.97438 * 9 7 6 31 31 H 1.08001 * 119.99225 * 180.02562 * 10 9 7 32 32 H 1.08998 * 109.47216 * 299.99663 * 13 11 2 33 33 H 1.08993 * 109.47612 * 59.99824 * 13 11 2 34 34 H 1.08998 * 109.47121 * 299.99405 * 14 13 11 35 35 H 1.09004 * 109.47162 * 59.99946 * 14 13 11 36 36 H 1.08995 * 109.47355 * 300.00162 * 16 15 14 37 37 H 1.09000 * 109.46789 * 59.99821 * 16 15 14 38 38 H 0.97002 * 119.99906 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6936 -2.0322 1.4519 6 6 2.1587 -2.6858 2.5773 7 6 2.9541 -2.0137 3.4882 8 17 3.5323 -2.8318 4.9060 9 6 3.2881 -0.6891 3.2689 10 6 2.8275 -0.0383 2.1400 11 16 2.1347 -0.8551 -1.4811 12 8 3.5415 -0.6838 -1.5858 13 6 1.3149 0.0374 -2.8309 14 6 1.7289 -0.5730 -4.1713 15 8 1.0827 0.1297 -5.2347 16 6 1.4037 -0.3636 -6.5369 17 6 0.6715 0.4466 -7.5754 18 1 0.0260 1.2574 -7.2715 19 6 0.8258 0.1528 -8.9137 20 7 1.6115 -0.8348 -9.2838 21 14 -0.0812 1.1575 -10.2011 22 1 0.3283 2.5811 -10.0968 23 1 0.2513 0.6441 -11.5543 24 1 -1.5447 1.0456 -9.9756 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.0688 -2.5553 0.7431 29 1 1.8976 -3.7199 2.7480 30 1 3.9087 -0.1638 3.9798 31 1 3.0885 0.9956 1.9686 32 1 0.2340 -0.0405 -2.7142 33 1 1.6086 1.0867 -2.8037 34 1 2.8098 -0.4947 -4.2879 35 1 1.4355 -1.6225 -4.1988 36 1 2.4777 -0.2803 -6.7024 37 1 1.1043 -1.4088 -6.6134 38 1 1.7203 -1.0413 -10.2253 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840864965.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:36 Heat of formation + Delta-G solvation = -78.306740 kcal Electronic energy + Delta-G solvation = -20600.148975 eV Core-core repulsion = 17173.913363 eV Total energy + Delta-G solvation = -3426.235612 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.069 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.85747 -36.94020 -36.86764 -35.81899 -34.40779 -32.88628 -31.49349 -31.10246 -29.48771 -27.04024 -24.53915 -23.25434 -22.87549 -22.28060 -21.37687 -17.77846 -17.35195 -16.51973 -16.43418 -16.03662 -15.74567 -15.50163 -14.96990 -14.65519 -14.42831 -14.14168 -13.85431 -13.82562 -13.72748 -13.36261 -13.06487 -12.67975 -12.27443 -12.09012 -12.00699 -11.90576 -11.60049 -11.50342 -11.17375 -11.12365 -10.94295 -10.76696 -10.71503 -10.28703 -10.04303 -9.44791 -9.18696 -8.94771 -8.89491 -8.30580 -8.23949 -6.14066 -4.16526 0.61290 0.88441 1.38258 1.76438 2.44245 3.22769 3.29909 3.32796 3.36418 3.63773 4.16297 4.32031 4.32925 4.49043 4.67948 4.83806 4.88258 4.94046 5.05112 5.10914 5.22070 5.24857 5.38438 5.48769 5.54219 5.56712 5.71311 5.79534 5.82689 5.85823 6.04434 6.09822 6.17010 6.37082 7.04519 7.37387 7.74703 8.09888 8.49677 8.95394 9.48175 10.97312 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.044549 B = 0.002018 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.375404 B =13874.685780 C =14084.107124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.381 4.381 3 H 0.100 0.900 4 C -0.047 4.047 5 C -0.110 4.110 6 C -0.103 4.103 7 C -0.039 4.039 8 Cl -0.073 7.073 9 C -0.105 4.105 10 C -0.100 4.100 11 S 1.252 4.748 12 O -0.835 6.835 13 C -0.444 4.444 14 C 0.083 3.917 15 O -0.392 6.392 16 C 0.193 3.807 17 C -0.518 4.518 18 H 0.066 0.934 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.910 3.090 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.274 1.274 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.144 0.856 29 H 0.138 0.862 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.126 0.874 33 H 0.092 0.908 34 H 0.041 0.959 35 H 0.049 0.951 36 H 0.006 0.994 37 H 0.009 0.991 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.945 -4.686 27.964 28.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.496 4.496 3 H 0.118 0.882 4 C -0.048 4.048 5 C -0.129 4.129 6 C -0.121 4.121 7 C -0.066 4.066 8 Cl -0.044 7.044 9 C -0.124 4.124 10 C -0.119 4.119 11 S 1.450 4.550 12 O -0.830 6.830 13 C -0.581 4.581 14 C 0.004 3.996 15 O -0.312 6.312 16 C 0.118 3.882 17 C -0.556 4.556 18 H 0.084 0.916 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.737 3.263 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.161 0.839 29 H 0.156 0.844 30 H 0.151 0.849 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.111 0.889 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.024 0.976 37 H 0.027 0.973 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.305 -5.434 27.869 28.424 hybrid contribution 0.493 2.529 -0.663 2.661 sum -0.812 -2.905 27.206 27.372 Atomic orbital electron populations 1.21569 0.89779 1.03591 1.03419 1.26568 1.04081 1.08788 1.10145 0.88157 1.19243 0.97015 0.94016 0.94526 1.21082 1.00292 0.93802 0.97693 1.21062 0.97040 1.00565 0.93470 1.20962 1.01122 0.93690 0.90852 1.98375 1.87826 1.79048 1.39186 1.21042 1.00239 0.92903 0.98234 1.21059 0.97187 1.00283 0.93356 1.70786 0.89685 1.09282 0.85245 1.93138 1.25405 1.81116 1.83361 1.27787 1.11019 1.10548 1.08720 1.21679 0.96410 0.95121 0.86353 1.87880 1.69390 1.58291 1.15677 1.20262 0.95679 0.94731 0.77490 1.20999 1.27850 1.16750 0.90004 0.91586 1.24965 0.95584 0.95548 0.98427 1.69951 1.37532 1.29082 1.17040 0.86366 0.80002 0.80149 0.79778 1.20050 1.21096 1.19954 0.90975 0.90670 0.91668 0.83851 0.84383 0.84870 0.85269 0.85571 0.88948 0.94073 0.93270 0.97601 0.97312 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.76 8.75 37.16 0.33 -0.43 16 2 C -0.38 -3.22 3.07 -27.88 -0.09 -3.31 16 3 H 0.10 0.92 7.88 -51.92 -0.41 0.52 16 4 C -0.05 -0.41 4.78 -104.62 -0.50 -0.91 16 5 C -0.11 -0.78 8.78 -39.59 -0.35 -1.13 16 6 C -0.10 -0.76 9.83 -39.55 -0.39 -1.15 16 7 C -0.04 -0.33 6.32 -39.50 -0.25 -0.58 16 8 Cl -0.07 -0.59 28.96 -51.86 -1.50 -2.09 16 9 C -0.11 -0.90 9.83 -39.55 -0.39 -1.29 16 10 C -0.10 -0.90 9.67 -39.59 -0.38 -1.28 16 11 S 1.25 13.50 12.29 -107.50 -1.32 12.18 16 12 O -0.83 -14.47 18.14 -35.23 -0.64 -15.11 16 13 C -0.44 -5.95 5.69 37.16 0.21 -5.74 16 14 C 0.08 1.53 5.95 37.16 0.22 1.75 16 15 O -0.39 -9.48 10.33 -35.23 -0.36 -9.84 16 16 C 0.19 5.32 5.69 36.00 0.20 5.52 16 17 C -0.52 -15.26 9.43 -34.44 -0.32 -15.59 16 18 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 21 Si 0.91 21.74 29.54 -169.99 -5.02 16.72 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 H 0.07 0.43 6.51 -51.93 -0.34 0.09 16 26 H 0.07 0.28 7.37 -51.93 -0.38 -0.10 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.14 0.56 7.56 -52.49 -0.40 0.16 16 29 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 30 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 31 H 0.13 1.05 7.95 -52.49 -0.42 0.63 16 32 H 0.13 1.34 6.90 -51.93 -0.36 0.99 16 33 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 37 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 352.36 15.07 5.31 5.31 Total: -1.00 -37.10 352.36 -9.83 -46.93 By element: Atomic # 1 Polarization: -0.19 SS G_CDS: -5.23 Total: -5.42 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: -1.80 Total: -22.61 kcal Atomic # 7 Polarization: -26.80 SS G_CDS: 0.74 Total: -26.07 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -1.00 Total: -24.95 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 13.50 SS G_CDS: -1.32 Total: 12.18 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -37.10 -9.83 -46.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840864965.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.375 kcal (2) G-P(sol) polarization free energy of solvation -37.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds