Wall clock time and date at job start Tue Mar 31 2020 11:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.46779 * 2 1 4 4 C 1.50696 * 109.46922 * 119.99567 * 2 1 3 5 5 C 1.38243 * 119.98567 * 59.73305 * 4 2 1 6 6 C 1.38209 * 120.01112 * 179.72314 * 5 4 2 7 7 C 1.38355 * 119.98840 * 0.54117 * 6 5 4 8 8 Cl 1.73598 * 120.01653 * 179.70364 * 7 6 5 9 9 C 1.38353 * 119.97068 * 359.73137 * 7 6 5 10 10 C 1.38210 * 119.98866 * 359.97438 * 9 7 6 11 11 S 1.81400 * 109.47002 * 239.99957 * 2 1 3 12 12 O 1.42105 * 109.46788 * 171.38535 * 11 2 1 13 13 C 1.81395 * 103.00021 * 55.00066 * 11 2 1 14 14 C 1.53001 * 109.47015 * 179.97438 * 13 11 2 15 15 O 1.42906 * 109.47415 * 179.97438 * 14 13 11 16 16 C 1.42898 * 114.00232 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.46999 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00009 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99742 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99933 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99741 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47131 * 59.99900 * 21 19 17 23 23 H 1.48497 * 109.47158 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46975 * 299.99737 * 21 19 17 25 25 H 1.08996 * 109.46936 * 60.00152 * 1 2 3 26 26 H 1.09004 * 109.46779 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.46879 * 300.00135 * 1 2 3 28 28 H 1.07999 * 119.98994 * 359.97438 * 5 4 2 29 29 H 1.08005 * 120.00915 * 180.26746 * 6 5 4 30 30 H 1.08001 * 120.00743 * 179.97438 * 9 7 6 31 31 H 1.08001 * 119.99225 * 180.02562 * 10 9 7 32 32 H 1.08998 * 109.47216 * 299.99663 * 13 11 2 33 33 H 1.08993 * 109.47612 * 59.99824 * 13 11 2 34 34 H 1.08998 * 109.47121 * 299.99405 * 14 13 11 35 35 H 1.09004 * 109.47162 * 59.99946 * 14 13 11 36 36 H 1.08995 * 109.47355 * 300.00162 * 16 15 14 37 37 H 1.09000 * 109.46789 * 59.99821 * 16 15 14 38 38 H 0.97002 * 119.99906 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 1.6936 -2.0322 1.4519 6 6 2.1587 -2.6858 2.5773 7 6 2.9541 -2.0137 3.4882 8 17 3.5323 -2.8318 4.9060 9 6 3.2881 -0.6891 3.2689 10 6 2.8275 -0.0383 2.1400 11 16 2.1347 -0.8551 -1.4811 12 8 3.5415 -0.6838 -1.5858 13 6 1.3149 0.0374 -2.8309 14 6 1.7289 -0.5730 -4.1713 15 8 1.0827 0.1297 -5.2347 16 6 1.4037 -0.3636 -6.5369 17 6 0.6715 0.4466 -7.5754 18 1 0.0260 1.2574 -7.2715 19 6 0.8258 0.1528 -8.9137 20 7 1.6115 -0.8348 -9.2838 21 14 -0.0812 1.1575 -10.2011 22 1 0.3283 2.5811 -10.0968 23 1 0.2513 0.6441 -11.5543 24 1 -1.5447 1.0456 -9.9756 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.0688 -2.5553 0.7431 29 1 1.8976 -3.7199 2.7480 30 1 3.9087 -0.1638 3.9798 31 1 3.0885 0.9956 1.9686 32 1 0.2340 -0.0405 -2.7142 33 1 1.6086 1.0867 -2.8037 34 1 2.8098 -0.4947 -4.2879 35 1 1.4355 -1.6225 -4.1988 36 1 2.4777 -0.2803 -6.7024 37 1 1.1043 -1.4088 -6.6134 38 1 1.7203 -1.0413 -10.2253 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840864965.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:35 Heat of formation + Delta-G solvation = -103.072873 kcal Electronic energy + Delta-G solvation = -20601.222915 eV Core-core repulsion = 17173.913363 eV Total energy + Delta-G solvation = -3427.309552 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.069 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.46181 -38.70490 -37.56266 -37.00555 -35.07733 -34.99668 -32.53758 -32.07890 -30.16386 -29.12659 -25.13056 -24.68401 -24.03870 -23.79806 -22.09069 -18.76287 -18.52306 -18.12040 -17.64931 -17.16534 -16.83216 -16.76358 -16.38385 -15.72884 -15.59291 -15.19993 -15.00159 -14.82738 -14.50103 -14.42439 -14.14753 -13.90007 -13.52583 -13.07366 -12.94132 -12.87851 -12.74538 -12.63063 -12.50407 -12.41062 -12.23015 -12.06399 -11.96763 -11.76224 -11.40238 -11.14519 -10.90329 -10.30877 -10.04321 -9.70094 -9.22818 -8.33643 -6.47065 -0.10004 0.28177 0.52636 1.14399 1.39991 1.44853 1.52751 1.53754 2.33821 2.56141 2.71328 2.99886 3.26980 3.48262 3.72972 3.88438 3.93990 4.04173 4.07033 4.27496 4.35972 4.38603 4.47695 4.67186 4.69443 4.75075 4.88052 4.97381 4.98019 5.07086 5.13060 5.20499 5.23781 5.39721 5.49567 5.52394 5.78702 5.92074 6.46993 6.76056 7.24567 8.78393 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.044549 B = 0.002018 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.375404 B =13874.685780 C =14084.107124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.365 4.365 3 H 0.090 0.910 4 C -0.064 4.064 5 C -0.108 4.108 6 C -0.106 4.106 7 C -0.051 4.051 8 Cl -0.073 7.073 9 C -0.116 4.116 10 C -0.117 4.117 11 S 1.307 4.693 12 O -0.905 6.905 13 C -0.442 4.442 14 C 0.067 3.933 15 O -0.406 6.406 16 C 0.204 3.796 17 C -0.552 4.552 18 H 0.064 0.936 19 C 0.005 3.995 20 N -0.929 5.929 21 Si 0.986 3.014 22 H -0.269 1.269 23 H -0.275 1.275 24 H -0.260 1.260 25 H 0.075 0.925 26 H 0.105 0.895 27 H 0.070 0.930 28 H 0.180 0.820 29 H 0.161 0.839 30 H 0.141 0.859 31 H 0.129 0.871 32 H 0.161 0.839 33 H 0.076 0.924 34 H 0.018 0.982 35 H 0.079 0.921 36 H -0.022 1.022 37 H 0.000 1.000 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.141 -5.042 28.509 29.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.483 4.483 3 H 0.109 0.891 4 C -0.066 4.066 5 C -0.127 4.127 6 C -0.124 4.124 7 C -0.078 4.078 8 Cl -0.044 7.044 9 C -0.135 4.135 10 C -0.137 4.137 11 S 1.508 4.492 12 O -0.900 6.900 13 C -0.578 4.578 14 C -0.011 4.011 15 O -0.326 6.326 16 C 0.129 3.871 17 C -0.590 4.590 18 H 0.082 0.918 19 C -0.194 4.194 20 N -0.568 5.568 21 Si 0.809 3.191 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.185 1.185 25 H 0.094 0.906 26 H 0.124 0.876 27 H 0.089 0.911 28 H 0.197 0.803 29 H 0.178 0.822 30 H 0.159 0.841 31 H 0.147 0.853 32 H 0.179 0.821 33 H 0.095 0.905 34 H 0.036 0.964 35 H 0.097 0.903 36 H -0.004 1.004 37 H 0.018 0.982 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.489 -5.799 28.407 29.202 hybrid contribution 1.201 2.606 -0.628 2.938 sum -2.289 -3.192 27.778 28.055 Atomic orbital electron populations 1.21715 0.87255 1.05870 1.03931 1.26398 1.05991 1.07830 1.08091 0.89089 1.19389 0.97681 0.95005 0.94497 1.21518 0.99960 0.93139 0.98100 1.21402 0.96300 1.01611 0.93076 1.21176 1.01500 0.93837 0.91238 1.98373 1.87881 1.78946 1.39243 1.21182 1.00575 0.93300 0.98422 1.21226 0.97748 1.00705 0.94005 1.69943 0.86747 1.08110 0.84397 1.93022 1.29607 1.82714 1.84690 1.27864 1.13593 1.09512 1.06824 1.22066 0.95067 0.97046 0.86937 1.87826 1.69947 1.59402 1.15433 1.19919 0.93750 0.94134 0.79347 1.21357 1.28807 1.17487 0.91328 0.91785 1.26017 0.96145 0.96582 1.00654 1.70064 1.38422 1.30362 1.17989 0.85190 0.79037 0.78322 0.76595 1.19362 1.19976 1.18490 0.90614 0.87605 0.91052 0.80300 0.82166 0.84101 0.85265 0.82128 0.90468 0.96350 0.90329 1.00376 0.98241 0.91935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 8.75 71.98 0.63 -0.50 16 2 C -0.37 -5.53 3.07 29.85 0.09 -5.43 16 3 H 0.09 1.60 7.88 -2.39 -0.02 1.58 16 4 C -0.06 -1.01 4.78 -19.86 -0.09 -1.10 16 5 C -0.11 -1.24 8.78 22.26 0.20 -1.04 16 6 C -0.11 -1.31 9.83 22.29 0.22 -1.09 16 7 C -0.05 -0.79 6.32 22.32 0.14 -0.65 16 8 Cl -0.07 -1.10 28.96 -2.72 -0.08 -1.18 16 9 C -0.12 -1.92 9.83 22.29 0.22 -1.70 16 10 C -0.12 -2.07 9.67 22.26 0.22 -1.85 16 11 S 1.31 26.74 12.29 -56.49 -0.69 26.04 16 12 O -0.90 -31.94 18.14 -148.98 -2.70 -34.64 16 13 C -0.44 -11.45 5.69 71.98 0.41 -11.04 16 14 C 0.07 2.48 5.95 71.98 0.43 2.90 16 15 O -0.41 -19.94 10.33 -148.98 -1.54 -21.48 16 16 C 0.20 11.59 5.69 71.24 0.41 11.99 16 17 C -0.55 -33.00 9.43 25.60 0.24 -32.76 16 18 H 0.06 3.75 7.81 -2.91 -0.02 3.72 16 19 C 0.00 0.28 5.46 84.66 0.46 0.74 16 20 N -0.93 -55.96 13.29 21.45 0.28 -55.67 16 21 Si 0.99 44.08 29.54 68.60 2.03 46.11 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 24 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 25 H 0.07 0.64 6.51 -2.39 -0.02 0.63 16 26 H 0.11 0.29 7.37 -2.39 -0.02 0.27 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.18 0.60 7.56 -2.91 -0.02 0.58 16 29 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 30 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 31 H 0.13 2.13 7.95 -2.91 -0.02 2.11 16 32 H 0.16 2.97 6.90 -2.39 -0.02 2.96 16 33 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 36 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 37 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 38 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -82.62 352.36 1.91 -80.71 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: 1.05 Total: 1.66 kcal Atomic # 6 Polarization: -45.11 SS G_CDS: 3.56 Total: -41.54 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.28 Total: -55.67 kcal Atomic # 8 Polarization: -51.88 SS G_CDS: -4.24 Total: -56.12 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 26.74 SS G_CDS: -0.69 Total: 26.04 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -0.08 Total: -1.18 kcal Total: -82.62 1.91 -80.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840864965.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.364 kcal (2) G-P(sol) polarization free energy of solvation -82.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds