Wall clock time and date at job start Tue Mar 31 2020 11:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47528 * 2 1 4 4 C 1.50696 * 109.47417 * 120.00643 * 2 1 3 5 5 C 1.38247 * 119.98658 * 240.00106 * 4 2 1 6 6 C 1.38216 * 120.01497 * 179.97438 * 5 4 2 7 7 C 1.38357 * 119.98603 * 0.02562 * 6 5 4 8 8 Cl 1.73599 * 120.01134 * 180.02562 * 7 6 5 9 9 C 1.38347 * 119.97107 * 0.28224 * 7 6 5 10 10 C 1.38219 * 119.98930 * 359.40143 * 9 7 6 11 11 S 1.81400 * 109.46895 * 240.00164 * 2 1 3 12 12 O 1.42096 * 109.47372 * 298.61319 * 11 2 1 13 13 C 1.81407 * 102.99916 * 55.00443 * 11 2 1 14 14 C 1.52999 * 109.46896 * 180.02562 * 13 11 2 15 15 O 1.42905 * 109.46709 * 179.97438 * 14 13 11 16 16 C 1.42904 * 113.99885 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.46992 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00309 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99899 * 180.02562 * 17 16 15 20 20 N 1.31506 * 120.00112 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 119.99885 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47145 * 90.00238 * 21 19 17 23 23 H 1.48501 * 109.47396 * 210.00326 * 21 19 17 24 24 H 1.48499 * 109.47672 * 330.00476 * 21 19 17 25 25 H 1.08992 * 109.47107 * 59.99194 * 1 2 3 26 26 H 1.08992 * 109.46984 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46754 * 299.99719 * 1 2 3 28 28 H 1.08003 * 119.99321 * 359.97438 * 5 4 2 29 29 H 1.08002 * 120.00776 * 180.02562 * 6 5 4 30 30 H 1.08000 * 120.00661 * 179.71600 * 9 7 6 31 31 H 1.07997 * 119.99445 * 180.32231 * 10 9 7 32 32 H 1.09001 * 109.46528 * 299.99716 * 13 11 2 33 33 H 1.08990 * 109.47253 * 59.99470 * 13 11 2 34 34 H 1.09001 * 109.47255 * 299.99216 * 14 13 11 35 35 H 1.08999 * 109.47321 * 60.00174 * 14 13 11 36 36 H 1.08996 * 109.46803 * 300.00172 * 16 15 14 37 37 H 1.09001 * 109.46893 * 60.00277 * 16 15 14 38 38 H 0.97004 * 120.00434 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 6 2.8272 -0.0385 2.1402 6 6 3.2879 -0.6894 3.2691 7 6 2.9539 -2.0141 3.4882 8 17 3.5315 -2.8321 4.9062 9 6 2.1637 -2.6879 2.5741 10 6 1.6982 -2.0340 1.4488 11 16 2.1346 -0.8551 -1.4812 12 8 1.6876 -2.2038 -1.4651 13 6 1.3148 0.0376 -2.8309 14 6 1.7278 -0.5736 -4.1714 15 8 1.0815 0.1294 -5.2346 16 6 1.4016 -0.3645 -6.5368 17 6 0.6696 0.4459 -7.5753 18 1 0.0242 1.2567 -7.2713 19 6 0.8230 0.1516 -8.9135 20 7 0.1846 0.8591 -9.8198 21 14 1.9387 -1.2512 -9.4393 22 1 1.1532 -2.5096 -9.5077 23 1 2.5128 -0.9529 -10.7760 24 1 3.0374 -1.4067 -8.4524 25 1 -0.3633 0.5139 -0.8898 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.0882 0.9955 1.9689 29 1 3.9084 -0.1642 3.9801 30 1 1.9064 -3.7233 2.7422 31 1 1.0771 -2.5585 0.7378 32 1 0.2339 -0.0402 -2.7141 33 1 1.6085 1.0869 -2.8036 34 1 2.8087 -0.4961 -4.2884 35 1 1.4336 -1.6227 -4.1983 36 1 2.4757 -0.2820 -6.7028 37 1 1.1013 -1.4096 -6.6129 38 1 0.2928 0.6523 -10.7613 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840864966.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:39 Heat of formation + Delta-G solvation = -72.434154 kcal Electronic energy + Delta-G solvation = -20722.952177 eV Core-core repulsion = 17296.971220 eV Total energy + Delta-G solvation = -3425.980957 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.069 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.85972 -37.08233 -36.95455 -35.86888 -34.43234 -32.82346 -31.46054 -31.26299 -29.56096 -27.73269 -24.52597 -23.22906 -22.90148 -21.90569 -21.36494 -17.86406 -17.42127 -16.98440 -16.44143 -16.04358 -15.72177 -15.66057 -14.98044 -14.61046 -14.47041 -14.37321 -13.87322 -13.71540 -13.58873 -13.25912 -13.06304 -12.79081 -12.55896 -12.42871 -12.09591 -11.98066 -11.64016 -11.48078 -11.28850 -11.18433 -11.08624 -10.84279 -10.73634 -10.20041 -9.89710 -9.42364 -9.25830 -9.02328 -8.93637 -8.54345 -8.30080 -6.15695 -4.15466 0.59334 0.90847 1.37122 1.75895 2.38948 3.22814 3.24619 3.29844 3.30788 3.53530 4.18317 4.32123 4.33399 4.51177 4.63389 4.67662 4.88248 4.97604 5.03728 5.05691 5.15610 5.22327 5.34889 5.36943 5.45589 5.60342 5.61889 5.75281 5.81902 5.88900 5.93226 6.05837 6.12146 6.40039 6.54169 6.93301 7.53615 7.92393 8.59534 8.94393 9.42936 10.97099 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.038058 B = 0.002147 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.551152 B =13040.091786 C =13412.057022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.378 4.378 3 H 0.134 0.866 4 C -0.058 4.058 5 C -0.097 4.097 6 C -0.111 4.111 7 C -0.037 4.037 8 Cl -0.074 7.074 9 C -0.106 4.106 10 C -0.102 4.102 11 S 1.255 4.745 12 O -0.832 6.832 13 C -0.444 4.444 14 C 0.079 3.921 15 O -0.377 6.377 16 C 0.167 3.833 17 C -0.521 4.521 18 H 0.082 0.918 19 C 0.072 3.928 20 N -0.894 5.894 21 Si 0.876 3.124 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.265 1.265 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.143 0.857 32 H 0.096 0.904 33 H 0.125 0.875 34 H 0.050 0.950 35 H 0.043 0.957 36 H 0.007 0.993 37 H 0.000 1.000 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.088 -2.375 28.963 30.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.493 4.493 3 H 0.152 0.848 4 C -0.059 4.059 5 C -0.116 4.116 6 C -0.130 4.130 7 C -0.064 4.064 8 Cl -0.045 7.045 9 C -0.125 4.125 10 C -0.121 4.121 11 S 1.453 4.547 12 O -0.827 6.827 13 C -0.581 4.581 14 C 0.001 3.999 15 O -0.297 6.297 16 C 0.091 3.909 17 C -0.559 4.559 18 H 0.100 0.900 19 C -0.130 4.130 20 N -0.532 5.532 21 Si 0.703 3.297 22 H -0.199 1.199 23 H -0.207 1.207 24 H -0.190 1.190 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.155 0.845 29 H 0.153 0.847 30 H 0.151 0.849 31 H 0.161 0.839 32 H 0.115 0.885 33 H 0.143 0.857 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.024 0.976 37 H 0.017 0.983 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.576 -3.040 28.837 30.537 hybrid contribution -1.552 -1.026 -0.155 1.867 sum 8.023 -4.066 28.682 30.059 Atomic orbital electron populations 1.21877 0.91880 1.03091 1.03526 1.26617 1.02926 1.09708 1.10025 0.84809 1.19279 0.97757 0.93764 0.95094 1.21056 0.97238 1.00192 0.93119 1.21046 1.00727 0.92752 0.98446 1.20992 1.00972 0.93817 0.90601 1.98374 1.87778 1.79167 1.39217 1.21062 0.97347 1.00551 0.93507 1.21352 0.99514 0.94193 0.97042 1.70939 1.13709 0.84880 0.85185 1.93104 1.80258 1.25863 1.83512 1.27773 1.10767 1.11259 1.08329 1.21757 0.96456 0.95179 0.86555 1.87943 1.69354 1.57545 1.14811 1.20659 0.95532 0.94479 0.80200 1.20865 1.28327 1.17608 0.89137 0.89974 1.24773 0.95651 0.96469 0.96089 1.69868 1.42264 1.39910 1.01165 0.86845 0.81529 0.82835 0.78533 1.19904 1.20666 1.18978 0.91173 0.91936 0.91619 0.84479 0.84727 0.84856 0.83931 0.88539 0.85668 0.93209 0.93887 0.97563 0.98271 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.75 37.16 0.33 -0.98 16 2 C -0.38 -2.85 3.07 -27.88 -0.09 -2.94 16 3 H 0.13 0.59 7.88 -51.92 -0.41 0.18 16 4 C -0.06 -0.48 4.78 -104.62 -0.50 -0.98 16 5 C -0.10 -0.65 9.67 -39.59 -0.38 -1.04 16 6 C -0.11 -0.80 9.83 -39.55 -0.39 -1.19 16 7 C -0.04 -0.32 6.32 -39.50 -0.25 -0.57 16 8 Cl -0.07 -0.61 28.96 -51.86 -1.50 -2.11 16 9 C -0.11 -0.98 9.83 -39.55 -0.39 -1.37 16 10 C -0.10 -1.02 8.44 -39.59 -0.33 -1.35 16 11 S 1.26 11.87 12.60 -107.50 -1.35 10.52 16 12 O -0.83 -12.32 16.16 -35.23 -0.57 -12.89 16 13 C -0.44 -5.49 5.69 37.16 0.21 -5.28 16 14 C 0.08 1.34 5.95 37.16 0.22 1.57 16 15 O -0.38 -8.69 10.33 -35.23 -0.36 -9.05 16 16 C 0.17 4.23 4.76 36.00 0.17 4.40 16 17 C -0.52 -15.48 9.99 -34.44 -0.34 -15.82 16 18 H 0.08 2.66 8.06 -52.49 -0.42 2.24 16 19 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 20 N -0.89 -27.43 13.96 55.43 0.77 -26.65 16 21 Si 0.88 21.27 27.47 -169.99 -4.67 16.61 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 25 H 0.07 0.62 6.51 -51.93 -0.34 0.28 16 26 H 0.06 0.65 7.39 -51.93 -0.38 0.27 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.14 0.55 7.95 -52.48 -0.42 0.13 16 29 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 30 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 31 H 0.14 1.64 6.22 -52.49 -0.33 1.31 16 32 H 0.10 1.31 6.90 -51.92 -0.36 0.95 16 33 H 0.13 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.01 0.16 7.20 -51.93 -0.37 -0.21 16 37 H 0.00 -0.01 7.57 -51.93 -0.39 -0.40 16 38 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 345.43 15.07 5.21 5.21 Total: -1.00 -36.09 345.43 -9.45 -45.54 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -5.13 Total: -3.63 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: -1.84 Total: -23.53 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.77 Total: -26.65 kcal Atomic # 8 Polarization: -21.01 SS G_CDS: -0.93 Total: -21.94 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.61 kcal Atomic # 16 Polarization: 11.87 SS G_CDS: -1.35 Total: 10.52 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.09 -9.45 -45.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840864966.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.899 kcal (2) G-P(sol) polarization free energy of solvation -36.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds