Wall clock time and date at job start Tue Mar 31 2020 11:22:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09001 * 109.47528 * 2 1
4 4 C 1.50696 * 109.47417 * 120.00643 * 2 1 3
5 5 C 1.38247 * 119.98658 * 240.00106 * 4 2 1
6 6 C 1.38216 * 120.01497 * 179.97438 * 5 4 2
7 7 C 1.38357 * 119.98603 * 0.02562 * 6 5 4
8 8 Cl 1.73599 * 120.01134 * 180.02562 * 7 6 5
9 9 C 1.38347 * 119.97107 * 0.28224 * 7 6 5
10 10 C 1.38219 * 119.98930 * 359.40143 * 9 7 6
11 11 S 1.81400 * 109.46895 * 240.00164 * 2 1 3
12 12 O 1.42096 * 109.47372 * 298.61319 * 11 2 1
13 13 C 1.81407 * 102.99916 * 55.00443 * 11 2 1
14 14 C 1.52999 * 109.46896 * 180.02562 * 13 11 2
15 15 O 1.42905 * 109.46709 * 179.97438 * 14 13 11
16 16 C 1.42904 * 113.99885 * 179.97438 * 15 14 13
17 17 C 1.50698 * 109.46992 * 180.02562 * 16 15 14
18 18 H 1.07995 * 120.00309 * 359.97438 * 17 16 15
19 19 C 1.37881 * 119.99899 * 180.02562 * 17 16 15
20 20 N 1.31506 * 120.00112 * 180.02562 * 19 17 16
21 21 Si 1.86796 * 119.99885 * 359.97438 * 19 17 16
22 22 H 1.48501 * 109.47145 * 90.00238 * 21 19 17
23 23 H 1.48501 * 109.47396 * 210.00326 * 21 19 17
24 24 H 1.48499 * 109.47672 * 330.00476 * 21 19 17
25 25 H 1.08992 * 109.47107 * 59.99194 * 1 2 3
26 26 H 1.08992 * 109.46984 * 179.97438 * 1 2 3
27 27 H 1.09000 * 109.46754 * 299.99719 * 1 2 3
28 28 H 1.08003 * 119.99321 * 359.97438 * 5 4 2
29 29 H 1.08002 * 120.00776 * 180.02562 * 6 5 4
30 30 H 1.08000 * 120.00661 * 179.71600 * 9 7 6
31 31 H 1.07997 * 119.99445 * 180.32231 * 10 9 7
32 32 H 1.09001 * 109.46528 * 299.99716 * 13 11 2
33 33 H 1.08990 * 109.47253 * 59.99470 * 13 11 2
34 34 H 1.09001 * 109.47255 * 299.99216 * 14 13 11
35 35 H 1.08999 * 109.47321 * 60.00174 * 14 13 11
36 36 H 1.08996 * 109.46803 * 300.00172 * 16 15 14
37 37 H 1.09001 * 109.46893 * 60.00277 * 16 15 14
38 38 H 0.97004 * 120.00434 * 179.97438 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0324 -0.7105 1.2303
5 6 2.8272 -0.0385 2.1402
6 6 3.2879 -0.6894 3.2691
7 6 2.9539 -2.0141 3.4882
8 17 3.5315 -2.8321 4.9062
9 6 2.1637 -2.6879 2.5741
10 6 1.6982 -2.0340 1.4488
11 16 2.1346 -0.8551 -1.4812
12 8 1.6876 -2.2038 -1.4651
13 6 1.3148 0.0376 -2.8309
14 6 1.7278 -0.5736 -4.1714
15 8 1.0815 0.1294 -5.2346
16 6 1.4016 -0.3645 -6.5368
17 6 0.6696 0.4459 -7.5753
18 1 0.0242 1.2567 -7.2713
19 6 0.8230 0.1516 -8.9135
20 7 0.1846 0.8591 -9.8198
21 14 1.9387 -1.2512 -9.4393
22 1 1.1532 -2.5096 -9.5077
23 1 2.5128 -0.9529 -10.7760
24 1 3.0374 -1.4067 -8.4524
25 1 -0.3633 0.5139 -0.8898
26 1 -0.3633 -1.0276 -0.0005
27 1 -0.3633 0.5138 0.8900
28 1 3.0882 0.9955 1.9689
29 1 3.9084 -0.1642 3.9801
30 1 1.9064 -3.7233 2.7422
31 1 1.0771 -2.5585 0.7378
32 1 0.2339 -0.0402 -2.7141
33 1 1.6085 1.0869 -2.8036
34 1 2.8087 -0.4961 -4.2884
35 1 1.4336 -1.6227 -4.1983
36 1 2.4757 -0.2820 -6.7028
37 1 1.1013 -1.4096 -6.6129
38 1 0.2928 0.6523 -10.7613
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000840864966.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:22:39
Heat of formation + Delta-G solvation = -72.434154 kcal
Electronic energy + Delta-G solvation = -20722.952177 eV
Core-core repulsion = 17296.971220 eV
Total energy + Delta-G solvation = -3425.980957 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 316.069 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-39.85972 -37.08233 -36.95455 -35.86888 -34.43234 -32.82346 -31.46054 -31.26299
-29.56096 -27.73269 -24.52597 -23.22906 -22.90148 -21.90569 -21.36494 -17.86406
-17.42127 -16.98440 -16.44143 -16.04358 -15.72177 -15.66057 -14.98044 -14.61046
-14.47041 -14.37321 -13.87322 -13.71540 -13.58873 -13.25912 -13.06304 -12.79081
-12.55896 -12.42871 -12.09591 -11.98066 -11.64016 -11.48078 -11.28850 -11.18433
-11.08624 -10.84279 -10.73634 -10.20041 -9.89710 -9.42364 -9.25830 -9.02328
-8.93637 -8.54345 -8.30080 -6.15695 -4.15466 0.59334 0.90847 1.37122
1.75895 2.38948 3.22814 3.24619 3.29844 3.30788 3.53530 4.18317
4.32123 4.33399 4.51177 4.63389 4.67662 4.88248 4.97604 5.03728
5.05691 5.15610 5.22327 5.34889 5.36943 5.45589 5.60342 5.61889
5.75281 5.81902 5.88900 5.93226 6.05837 6.12146 6.40039 6.54169
6.93301 7.53615 7.92393 8.59534 8.94393 9.42936 10.97099
Molecular weight = 316.07amu
Principal moments of inertia in cm(-1)
A = 0.038058 B = 0.002147 C = 0.002087
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 735.551152 B =13040.091786 C =13412.057022
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.378 4.378
3 H 0.134 0.866
4 C -0.058 4.058
5 C -0.097 4.097
6 C -0.111 4.111
7 C -0.037 4.037
8 Cl -0.074 7.074
9 C -0.106 4.106
10 C -0.102 4.102
11 S 1.255 4.745
12 O -0.832 6.832
13 C -0.444 4.444
14 C 0.079 3.921
15 O -0.377 6.377
16 C 0.167 3.833
17 C -0.521 4.521
18 H 0.082 0.918
19 C 0.072 3.928
20 N -0.894 5.894
21 Si 0.876 3.124
22 H -0.273 1.273
23 H -0.281 1.281
24 H -0.265 1.265
25 H 0.069 0.931
26 H 0.062 0.938
27 H 0.065 0.935
28 H 0.137 0.863
29 H 0.135 0.865
30 H 0.134 0.866
31 H 0.143 0.857
32 H 0.096 0.904
33 H 0.125 0.875
34 H 0.050 0.950
35 H 0.043 0.957
36 H 0.007 0.993
37 H 0.000 1.000
38 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.088 -2.375 28.963 30.448
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.493 4.493
3 H 0.152 0.848
4 C -0.059 4.059
5 C -0.116 4.116
6 C -0.130 4.130
7 C -0.064 4.064
8 Cl -0.045 7.045
9 C -0.125 4.125
10 C -0.121 4.121
11 S 1.453 4.547
12 O -0.827 6.827
13 C -0.581 4.581
14 C 0.001 3.999
15 O -0.297 6.297
16 C 0.091 3.909
17 C -0.559 4.559
18 H 0.100 0.900
19 C -0.130 4.130
20 N -0.532 5.532
21 Si 0.703 3.297
22 H -0.199 1.199
23 H -0.207 1.207
24 H -0.190 1.190
25 H 0.088 0.912
26 H 0.081 0.919
27 H 0.084 0.916
28 H 0.155 0.845
29 H 0.153 0.847
30 H 0.151 0.849
31 H 0.161 0.839
32 H 0.115 0.885
33 H 0.143 0.857
34 H 0.068 0.932
35 H 0.061 0.939
36 H 0.024 0.976
37 H 0.017 0.983
38 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 9.576 -3.040 28.837 30.537
hybrid contribution -1.552 -1.026 -0.155 1.867
sum 8.023 -4.066 28.682 30.059
Atomic orbital electron populations
1.21877 0.91880 1.03091 1.03526 1.26617 1.02926 1.09708 1.10025
0.84809 1.19279 0.97757 0.93764 0.95094 1.21056 0.97238 1.00192
0.93119 1.21046 1.00727 0.92752 0.98446 1.20992 1.00972 0.93817
0.90601 1.98374 1.87778 1.79167 1.39217 1.21062 0.97347 1.00551
0.93507 1.21352 0.99514 0.94193 0.97042 1.70939 1.13709 0.84880
0.85185 1.93104 1.80258 1.25863 1.83512 1.27773 1.10767 1.11259
1.08329 1.21757 0.96456 0.95179 0.86555 1.87943 1.69354 1.57545
1.14811 1.20659 0.95532 0.94479 0.80200 1.20865 1.28327 1.17608
0.89137 0.89974 1.24773 0.95651 0.96469 0.96089 1.69868 1.42264
1.39910 1.01165 0.86845 0.81529 0.82835 0.78533 1.19904 1.20666
1.18978 0.91173 0.91936 0.91619 0.84479 0.84727 0.84856 0.83931
0.88539 0.85668 0.93209 0.93887 0.97563 0.98271 0.92290
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.31 8.75 37.16 0.33 -0.98 16
2 C -0.38 -2.85 3.07 -27.88 -0.09 -2.94 16
3 H 0.13 0.59 7.88 -51.92 -0.41 0.18 16
4 C -0.06 -0.48 4.78 -104.62 -0.50 -0.98 16
5 C -0.10 -0.65 9.67 -39.59 -0.38 -1.04 16
6 C -0.11 -0.80 9.83 -39.55 -0.39 -1.19 16
7 C -0.04 -0.32 6.32 -39.50 -0.25 -0.57 16
8 Cl -0.07 -0.61 28.96 -51.86 -1.50 -2.11 16
9 C -0.11 -0.98 9.83 -39.55 -0.39 -1.37 16
10 C -0.10 -1.02 8.44 -39.59 -0.33 -1.35 16
11 S 1.26 11.87 12.60 -107.50 -1.35 10.52 16
12 O -0.83 -12.32 16.16 -35.23 -0.57 -12.89 16
13 C -0.44 -5.49 5.69 37.16 0.21 -5.28 16
14 C 0.08 1.34 5.95 37.16 0.22 1.57 16
15 O -0.38 -8.69 10.33 -35.23 -0.36 -9.05 16
16 C 0.17 4.23 4.76 36.00 0.17 4.40 16
17 C -0.52 -15.48 9.99 -34.44 -0.34 -15.82 16
18 H 0.08 2.66 8.06 -52.49 -0.42 2.24 16
19 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16
20 N -0.89 -27.43 13.96 55.43 0.77 -26.65 16
21 Si 0.88 21.27 27.47 -169.99 -4.67 16.61 16
22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16
23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
24 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16
25 H 0.07 0.62 6.51 -51.93 -0.34 0.28 16
26 H 0.06 0.65 7.39 -51.93 -0.38 0.27 16
27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
28 H 0.14 0.55 7.95 -52.48 -0.42 0.13 16
29 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16
30 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16
31 H 0.14 1.64 6.22 -52.49 -0.33 1.31 16
32 H 0.10 1.31 6.90 -51.92 -0.36 0.95 16
33 H 0.13 1.25 8.14 -51.93 -0.42 0.83 16
34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
35 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16
36 H 0.01 0.16 7.20 -51.93 -0.37 -0.21 16
37 H 0.00 -0.01 7.57 -51.93 -0.39 -0.40 16
38 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16
LS Contribution 345.43 15.07 5.21 5.21
Total: -1.00 -36.09 345.43 -9.45 -45.54
By element:
Atomic # 1 Polarization: 1.49 SS G_CDS: -5.13 Total: -3.63 kcal
Atomic # 6 Polarization: -21.69 SS G_CDS: -1.84 Total: -23.53 kcal
Atomic # 7 Polarization: -27.43 SS G_CDS: 0.77 Total: -26.65 kcal
Atomic # 8 Polarization: -21.01 SS G_CDS: -0.93 Total: -21.94 kcal
Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.61 kcal
Atomic # 16 Polarization: 11.87 SS G_CDS: -1.35 Total: 10.52 kcal
Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal
Total LS contribution 5.21 Total: 5.21 kcal
Total: -36.09 -9.45 -45.54 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000840864966.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.899 kcal
(2) G-P(sol) polarization free energy of solvation -36.089 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.988 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.535 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.434 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds