Wall clock time and date at job start Tue Mar 31 2020 11:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47528 * 2 1 4 4 C 1.50696 * 109.47417 * 120.00643 * 2 1 3 5 5 C 1.38247 * 119.98658 * 240.00106 * 4 2 1 6 6 C 1.38216 * 120.01497 * 179.97438 * 5 4 2 7 7 C 1.38357 * 119.98603 * 0.02562 * 6 5 4 8 8 Cl 1.73599 * 120.01134 * 180.02562 * 7 6 5 9 9 C 1.38347 * 119.97107 * 0.28224 * 7 6 5 10 10 C 1.38219 * 119.98930 * 359.40143 * 9 7 6 11 11 S 1.81400 * 109.46895 * 240.00164 * 2 1 3 12 12 O 1.42096 * 109.47372 * 298.61319 * 11 2 1 13 13 C 1.81407 * 102.99916 * 55.00443 * 11 2 1 14 14 C 1.52999 * 109.46896 * 180.02562 * 13 11 2 15 15 O 1.42905 * 109.46709 * 179.97438 * 14 13 11 16 16 C 1.42904 * 113.99885 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.46992 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00309 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99899 * 180.02562 * 17 16 15 20 20 N 1.31506 * 120.00112 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 119.99885 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47145 * 90.00238 * 21 19 17 23 23 H 1.48501 * 109.47396 * 210.00326 * 21 19 17 24 24 H 1.48499 * 109.47672 * 330.00476 * 21 19 17 25 25 H 1.08992 * 109.47107 * 59.99194 * 1 2 3 26 26 H 1.08992 * 109.46984 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46754 * 299.99719 * 1 2 3 28 28 H 1.08003 * 119.99321 * 359.97438 * 5 4 2 29 29 H 1.08002 * 120.00776 * 180.02562 * 6 5 4 30 30 H 1.08000 * 120.00661 * 179.71600 * 9 7 6 31 31 H 1.07997 * 119.99445 * 180.32231 * 10 9 7 32 32 H 1.09001 * 109.46528 * 299.99716 * 13 11 2 33 33 H 1.08990 * 109.47253 * 59.99470 * 13 11 2 34 34 H 1.09001 * 109.47255 * 299.99216 * 14 13 11 35 35 H 1.08999 * 109.47321 * 60.00174 * 14 13 11 36 36 H 1.08996 * 109.46803 * 300.00172 * 16 15 14 37 37 H 1.09001 * 109.46893 * 60.00277 * 16 15 14 38 38 H 0.97004 * 120.00434 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 6 2.8272 -0.0385 2.1402 6 6 3.2879 -0.6894 3.2691 7 6 2.9539 -2.0141 3.4882 8 17 3.5315 -2.8321 4.9062 9 6 2.1637 -2.6879 2.5741 10 6 1.6982 -2.0340 1.4488 11 16 2.1346 -0.8551 -1.4812 12 8 1.6876 -2.2038 -1.4651 13 6 1.3148 0.0376 -2.8309 14 6 1.7278 -0.5736 -4.1714 15 8 1.0815 0.1294 -5.2346 16 6 1.4016 -0.3645 -6.5368 17 6 0.6696 0.4459 -7.5753 18 1 0.0242 1.2567 -7.2713 19 6 0.8230 0.1516 -8.9135 20 7 0.1846 0.8591 -9.8198 21 14 1.9387 -1.2512 -9.4393 22 1 1.1532 -2.5096 -9.5077 23 1 2.5128 -0.9529 -10.7760 24 1 3.0374 -1.4067 -8.4524 25 1 -0.3633 0.5139 -0.8898 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 3.0882 0.9955 1.9689 29 1 3.9084 -0.1642 3.9801 30 1 1.9064 -3.7233 2.7422 31 1 1.0771 -2.5585 0.7378 32 1 0.2339 -0.0402 -2.7141 33 1 1.6085 1.0869 -2.8036 34 1 2.8087 -0.4961 -4.2884 35 1 1.4336 -1.6227 -4.1983 36 1 2.4757 -0.2820 -6.7028 37 1 1.1013 -1.4096 -6.6129 38 1 0.2928 0.6523 -10.7613 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840864966.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:38 Heat of formation + Delta-G solvation = -96.981222 kcal Electronic energy + Delta-G solvation = -20724.016618 eV Core-core repulsion = 17296.971220 eV Total energy + Delta-G solvation = -3427.045398 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.069 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.47590 -38.76749 -37.58763 -36.87814 -35.10416 -34.96058 -32.62100 -32.06121 -30.34412 -29.66292 -25.20233 -24.28413 -23.87837 -23.79208 -22.04766 -19.12131 -18.64912 -18.08121 -17.69718 -17.05817 -16.89928 -16.69626 -16.35013 -15.71945 -15.57463 -15.20492 -14.88293 -14.79606 -14.48960 -14.39941 -14.33618 -13.96739 -13.65334 -13.49512 -13.06205 -12.99030 -12.72232 -12.65002 -12.41616 -12.31458 -12.21360 -12.09713 -11.83378 -11.78957 -11.43201 -11.06729 -10.95029 -10.42965 -10.03363 -9.74876 -9.11418 -8.39549 -6.48118 -0.08490 0.29688 0.59815 1.13266 1.33188 1.35599 1.46764 1.59952 2.27896 2.62120 2.69474 2.92878 3.20142 3.52054 3.73478 3.93366 3.93949 4.01637 4.06913 4.26682 4.36535 4.38409 4.44203 4.52681 4.56688 4.71054 4.74181 4.82457 4.96261 4.99723 5.01919 5.10026 5.22273 5.25183 5.39870 5.49567 5.80226 5.89449 6.55292 6.67990 7.16197 8.77215 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.038058 B = 0.002147 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.551152 B =13040.091786 C =13412.057022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.367 4.367 3 H 0.182 0.818 4 C -0.066 4.066 5 C -0.084 4.084 6 C -0.110 4.110 7 C -0.045 4.045 8 Cl -0.074 7.074 9 C -0.121 4.121 10 C -0.122 4.122 11 S 1.311 4.689 12 O -0.889 6.889 13 C -0.447 4.447 14 C 0.063 3.937 15 O -0.404 6.404 16 C 0.174 3.826 17 C -0.548 4.548 18 H 0.031 0.969 19 C 0.013 3.987 20 N -0.940 5.940 21 Si 0.954 3.046 22 H -0.265 1.265 23 H -0.270 1.270 24 H -0.240 1.240 25 H 0.069 0.931 26 H 0.036 0.964 27 H 0.077 0.923 28 H 0.177 0.823 29 H 0.159 0.841 30 H 0.132 0.868 31 H 0.118 0.882 32 H 0.078 0.922 33 H 0.154 0.846 34 H 0.084 0.916 35 H 0.029 0.971 36 H 0.025 0.975 37 H 0.004 0.996 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.777 -1.826 30.523 32.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.484 4.484 3 H 0.199 0.801 4 C -0.068 4.068 5 C -0.103 4.103 6 C -0.128 4.128 7 C -0.072 4.072 8 Cl -0.045 7.045 9 C -0.139 4.139 10 C -0.141 4.141 11 S 1.510 4.490 12 O -0.885 6.885 13 C -0.583 4.583 14 C -0.015 4.015 15 O -0.324 6.324 16 C 0.098 3.902 17 C -0.586 4.586 18 H 0.049 0.951 19 C -0.186 4.186 20 N -0.579 5.579 21 Si 0.775 3.225 22 H -0.190 1.190 23 H -0.195 1.195 24 H -0.163 1.163 25 H 0.088 0.912 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.195 0.805 29 H 0.176 0.824 30 H 0.150 0.850 31 H 0.136 0.864 32 H 0.097 0.903 33 H 0.172 0.828 34 H 0.102 0.898 35 H 0.047 0.953 36 H 0.043 0.957 37 H 0.022 0.978 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.261 -2.494 30.394 32.869 hybrid contribution -2.466 -1.108 -0.460 2.743 sum 9.794 -3.603 29.934 31.701 Atomic orbital electron populations 1.21898 0.93025 1.01714 1.04154 1.26587 1.01960 1.11709 1.08125 0.80102 1.19377 0.98415 0.93136 0.95853 1.21454 0.95351 1.01660 0.91789 1.21410 1.00349 0.92077 0.99000 1.21145 1.01015 0.94606 0.90473 1.98373 1.87704 1.79374 1.39093 1.21100 0.98143 1.00821 0.93881 1.21277 1.00280 0.95395 0.97159 1.70281 1.11733 0.82587 0.84370 1.93012 1.81109 1.29750 1.84607 1.27901 1.09973 1.13329 1.07059 1.22172 0.98217 0.94418 0.86669 1.87889 1.70778 1.58654 1.15082 1.20399 0.95609 0.93564 0.80581 1.21145 1.28772 1.17393 0.91290 0.95056 1.25853 0.97313 0.99664 0.95731 1.70020 1.43935 1.42026 1.01899 0.85631 0.79645 0.78344 0.78905 1.19034 1.19455 1.16301 0.91182 0.94437 0.90352 0.80537 0.82356 0.85037 0.86426 0.90348 0.82804 0.89825 0.95262 0.95733 0.97842 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.75 71.98 0.63 -1.87 16 2 C -0.37 -4.50 3.07 29.85 0.09 -4.40 16 3 H 0.18 0.58 7.88 -2.39 -0.02 0.56 16 4 C -0.07 -0.95 4.78 -19.86 -0.09 -1.05 16 5 C -0.08 -0.78 9.67 22.27 0.22 -0.56 16 6 C -0.11 -1.23 9.83 22.29 0.22 -1.01 16 7 C -0.05 -0.71 6.32 22.32 0.14 -0.57 16 8 Cl -0.07 -1.13 28.96 -2.72 -0.08 -1.20 16 9 C -0.12 -2.23 9.83 22.29 0.22 -2.01 16 10 C -0.12 -2.43 8.44 22.27 0.19 -2.24 16 11 S 1.31 22.70 12.60 -56.49 -0.71 21.99 16 12 O -0.89 -26.68 16.16 -148.98 -2.41 -29.09 16 13 C -0.45 -10.44 5.69 71.98 0.41 -10.03 16 14 C 0.06 2.07 5.95 71.98 0.43 2.50 16 15 O -0.40 -18.67 10.33 -148.98 -1.54 -20.21 16 16 C 0.17 8.78 4.76 71.24 0.34 9.12 16 17 C -0.55 -33.49 9.99 25.60 0.26 -33.23 16 18 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 19 C 0.01 0.75 5.47 84.66 0.46 1.21 16 20 N -0.94 -58.98 13.96 21.45 0.30 -58.68 16 21 Si 0.95 43.19 27.47 68.60 1.88 45.07 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 24 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 25 H 0.07 1.16 6.51 -2.39 -0.02 1.15 16 26 H 0.04 0.81 7.39 -2.39 -0.02 0.79 16 27 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.18 0.26 7.95 -2.91 -0.02 0.24 16 29 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 30 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 31 H 0.12 2.92 6.22 -2.91 -0.02 2.90 16 32 H 0.08 2.12 6.90 -2.39 -0.02 2.10 16 33 H 0.15 2.63 8.14 -2.40 -0.02 2.61 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.02 1.15 7.20 -2.39 -0.02 1.14 16 37 H 0.00 0.19 7.57 -2.39 -0.02 0.17 16 38 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -83.02 345.43 1.95 -81.07 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 1.00 Total: 5.19 kcal Atomic # 6 Polarization: -47.65 SS G_CDS: 3.51 Total: -44.14 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.30 Total: -58.68 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -3.95 Total: -49.29 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.88 Total: 45.07 kcal Atomic # 16 Polarization: 22.70 SS G_CDS: -0.71 Total: 21.99 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -0.08 Total: -1.20 kcal Total: -83.02 1.95 -81.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840864966.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.913 kcal (2) G-P(sol) polarization free energy of solvation -83.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds