Wall clock time and date at job start Tue Mar 31 2020 11:11:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52992 * 109.47482 * 2 1
4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1
5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1
6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2
7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2
8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3
9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3
10 10 H 1.48496 * 109.47138 * 359.97438 * 9 7 5
11 11 H 1.48500 * 109.47111 * 119.99988 * 9 7 5
12 12 H 1.48503 * 109.46778 * 239.99962 * 9 7 5
13 13 O 1.45208 * 109.47166 * 65.00081 * 3 2 1
14 14 C 1.34727 * 116.99850 * 270.00271 * 13 3 2
15 15 O 1.21493 * 120.00200 * 359.97438 * 14 13 3
16 16 C 1.47580 * 119.99888 * 179.97438 * 14 13 3
17 17 C 1.39699 * 120.13978 * 359.72552 * 16 14 13
18 18 C 1.38319 * 119.83517 * 179.71882 * 17 16 14
19 19 O 1.35952 * 119.93562 * 180.27844 * 18 17 16
20 20 C 1.42905 * 116.99672 * 180.28376 * 19 18 17
21 21 C 1.38893 * 120.12294 * 0.55611 * 18 17 16
22 22 C 1.38251 * 120.28700 * 359.72077 * 21 18 17
23 23 Cl 1.73599 * 119.91963 * 180.02562 * 22 21 18
24 24 C 1.38423 * 120.16009 * 0.02562 * 22 21 18
25 25 F 1.35097 * 120.06560 * 179.97438 * 24 22 21
26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3
27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3
28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3
29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3
30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3
31 31 H 0.96993 * 119.99651 * 179.97438 * 8 7 5
32 32 H 1.07995 * 120.08031 * 359.97438 * 17 16 14
33 33 H 1.09001 * 109.46866 * 179.97438 * 20 19 18
34 34 H 1.09002 * 109.46594 * 299.99468 * 20 19 18
35 35 H 1.08993 * 109.47849 * 59.99483 * 20 19 18
36 36 H 1.08002 * 119.85981 * 179.74395 * 21 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.6054 1.9815 -0.8418
5 6 3.5419 1.4443 -0.1238
6 1 4.1473 1.8887 0.6523
7 6 4.1433 0.8784 -1.2280
8 7 3.4062 0.3374 -2.1734
9 14 6.0050 0.8801 -1.3812
10 1 6.5988 1.5453 -0.1938
11 1 6.4963 -0.5190 -1.4627
12 1 6.3999 1.6157 -2.6093
13 8 1.6560 2.0916 1.2408
14 6 0.4684 2.7278 1.2561
15 8 -0.2270 2.7401 0.2600
16 6 0.0123 3.4095 2.4829
17 6 0.8070 3.3923 3.6317
18 6 0.3761 4.0383 4.7764
19 8 1.1504 4.0276 5.8938
20 6 0.6416 4.7092 7.0421
21 6 -0.8488 4.6930 4.7880
22 6 -1.6420 4.7084 3.6558
23 17 -3.1710 5.5301 3.6807
24 6 -1.2199 4.0702 2.5022
25 9 -1.9967 4.0860 1.3970
26 1 -0.3633 0.5139 -0.8900
27 1 -0.3633 0.5138 0.8900
28 1 -0.3634 -1.0277 -0.0005
29 1 1.8933 -0.5139 0.8900
30 1 1.8934 -0.5138 -0.8899
31 1 3.8292 -0.0604 -2.9503
32 1 1.7573 2.8793 3.6249
33 1 1.3554 4.6233 7.8614
34 1 0.4886 5.7614 6.8019
35 1 -0.3073 4.2627 7.3390
36 1 -1.1830 5.1925 5.6854
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000842341913.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:11:13
Heat of formation + Delta-G solvation = -150.694359 kcal
Electronic energy + Delta-G solvation = -24203.947131 eV
Core-core repulsion = 20208.359380 eV
Total energy + Delta-G solvation = -3995.587751 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 316.071 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-48.85757 -40.53761 -39.52131 -37.68833 -36.62853 -35.74839 -33.56245 -31.75135
-31.20085 -30.16860 -27.67213 -27.26280 -24.55896 -23.30407 -22.73465 -21.07148
-19.70763 -18.56165 -17.55459 -17.38587 -16.86774 -16.46028 -16.25513 -15.71899
-15.50131 -15.23152 -15.07277 -14.64439 -14.40459 -13.67527 -13.28281 -13.17061
-12.94403 -12.86750 -12.50884 -12.30956 -12.11011 -11.53511 -11.50359 -11.39939
-11.31428 -11.21167 -10.99394 -10.87859 -10.66888 -10.29414 -9.88097 -9.73022
-9.41698 -9.32968 -8.83598 -8.47934 -8.41017 -6.20285 -4.27585 0.35137
0.76776 1.63113 2.68193 2.83665 3.23044 3.27638 3.32375 3.41708
3.55113 3.90442 4.29471 4.40447 4.54288 4.68715 4.81184 4.82440
5.08003 5.11949 5.19848 5.32334 5.64490 5.74718 5.92497 6.14156
6.22789 6.29742 6.44527 6.83892 6.92708 6.93645 7.14572 7.18156
7.58671 7.70558 7.88094 8.11744 8.51584 8.83217 9.37584 10.86579
Molecular weight = 316.07amu
Principal moments of inertia in cm(-1)
A = 0.016804 B = 0.003828 C = 0.003318
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1665.889754 B = 7312.915331 C = 8435.537484
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.136 4.136
3 C 0.222 3.778
4 H 0.050 0.950
5 C -0.522 4.522
6 H 0.070 0.930
7 C 0.063 3.937
8 N -0.887 5.887
9 Si 0.911 3.089
10 H -0.270 1.270
11 H -0.281 1.281
12 H -0.282 1.282
13 O -0.345 6.345
14 C 0.496 3.504
15 O -0.490 6.490
16 C -0.098 4.098
17 C -0.060 4.060
18 C 0.117 3.883
19 O -0.303 6.303
20 C 0.022 3.978
21 C -0.151 4.151
22 C -0.051 4.051
23 Cl -0.042 7.042
24 C 0.133 3.867
25 F -0.101 7.101
26 H 0.054 0.946
27 H 0.030 0.970
28 H 0.034 0.966
29 H 0.043 0.957
30 H 0.110 0.890
31 H 0.266 0.734
32 H 0.167 0.833
33 H 0.105 0.895
34 H 0.058 0.942
35 H 0.058 0.942
36 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.408 8.495 17.202 20.946
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.174 4.174
3 C 0.170 3.830
4 H 0.068 0.932
5 C -0.560 4.560
6 H 0.089 0.911
7 C -0.139 4.139
8 N -0.524 5.524
9 Si 0.738 3.262
10 H -0.194 1.194
11 H -0.207 1.207
12 H -0.208 1.208
13 O -0.261 6.261
14 C 0.339 3.661
15 O -0.379 6.379
16 C -0.100 4.100
17 C -0.079 4.079
18 C 0.072 3.928
19 O -0.217 6.217
20 C -0.072 4.072
21 C -0.171 4.171
22 C -0.079 4.079
23 Cl -0.013 7.013
24 C 0.112 3.888
25 F -0.079 7.079
26 H 0.073 0.927
27 H 0.049 0.951
28 H 0.053 0.947
29 H 0.062 0.938
30 H 0.128 0.872
31 H 0.076 0.924
32 H 0.185 0.815
33 H 0.123 0.877
34 H 0.077 0.923
35 H 0.077 0.923
36 H 0.169 0.831
Dipole moment (debyes) X Y Z Total
from point charges -8.536 8.355 16.681 20.516
hybrid contribution 0.309 0.178 -0.278 0.452
sum -8.226 8.533 16.403 20.237
Atomic orbital electron populations
1.21872 0.98322 0.99157 1.00787 1.22033 0.92663 0.99179 1.03521
1.20794 0.95189 0.88806 0.78226 0.93240 1.21061 0.89438 1.39080
1.06371 0.91135 1.24883 0.99273 0.94708 0.95023 1.69900 1.35337
1.37771 1.09438 0.86224 0.83815 0.77892 0.78251 1.19439 1.20701
1.20757 1.86530 1.32836 1.62213 1.44559 1.20352 0.81821 0.77586
0.86389 1.90870 1.55147 1.57604 1.34328 1.19243 0.93965 1.02035
0.94773 1.20837 1.01150 0.97567 0.88296 1.18644 0.89817 0.96530
0.87848 1.86183 1.44275 1.72149 1.19061 1.23167 1.01036 0.96577
0.86465 1.21118 0.94168 1.03278 0.98522 1.20427 0.91176 1.02039
0.94284 1.98392 1.27422 1.76806 1.98631 1.17212 0.89413 0.98992
0.83230 1.91638 1.72601 1.94030 1.49670 0.92703 0.95050 0.94675
0.93816 0.87178 0.92385 0.81532 0.87697 0.92322 0.92343 0.83109
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.18 8.56 37.16 0.32 -2.86 16
2 C -0.14 -3.34 5.49 -26.74 -0.15 -3.49 16
3 C 0.22 5.81 2.25 -27.89 -0.06 5.75 16
4 H 0.05 1.44 7.16 -51.93 -0.37 1.07 16
5 C -0.52 -14.30 8.90 -34.44 -0.31 -14.61 16
6 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16
7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16
8 N -0.89 -24.74 11.30 55.43 0.63 -24.11 16
9 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 16
10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16
11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16
12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16
13 O -0.35 -8.00 9.05 -40.57 -0.37 -8.37 16
14 C 0.50 10.57 6.34 34.54 0.22 10.79 16
15 O -0.49 -11.62 12.52 -19.26 -0.24 -11.87 16
16 C -0.10 -1.65 5.88 -104.95 -0.62 -2.26 16
17 C -0.06 -0.85 9.55 -39.01 -0.37 -1.22 16
18 C 0.12 1.36 6.68 -39.31 -0.26 1.10 16
19 O -0.30 -3.12 10.49 -19.59 -0.21 -3.32 16
20 C 0.02 0.13 9.81 101.05 0.99 1.12 16
21 C -0.15 -1.55 8.81 -39.33 -0.35 -1.90 16
22 C -0.05 -0.64 6.32 -39.51 -0.25 -0.89 16
23 Cl -0.04 -0.47 28.60 -51.86 -1.48 -1.95 16
24 C 0.13 2.09 7.26 -38.92 -0.28 1.81 16
25 F -0.10 -1.81 15.10 2.25 0.03 -1.78 16
26 H 0.05 1.27 7.79 -51.93 -0.40 0.87 16
27 H 0.03 0.67 6.06 -51.93 -0.31 0.35 16
28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16
29 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16
30 H 0.11 2.93 5.95 -51.93 -0.31 2.62 16
31 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16
32 H 0.17 2.36 7.61 -52.49 -0.40 1.96 16
33 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16
34 H 0.06 0.27 7.65 -51.93 -0.40 -0.13 16
35 H 0.06 0.27 7.65 -51.93 -0.40 -0.13 16
36 H 0.15 1.06 6.27 -52.49 -0.33 0.73 16
LS Contribution 325.76 15.07 4.91 4.91
Total: -1.00 -30.29 325.76 -6.70 -36.99
By element:
Atomic # 1 Polarization: 2.56 SS G_CDS: -3.74 Total: -1.17 kcal
Atomic # 6 Polarization: -3.84 SS G_CDS: -1.21 Total: -5.05 kcal
Atomic # 7 Polarization: -24.74 SS G_CDS: 0.63 Total: -24.11 kcal
Atomic # 8 Polarization: -22.75 SS G_CDS: -0.81 Total: -23.56 kcal
Atomic # 9 Polarization: -1.81 SS G_CDS: 0.03 Total: -1.78 kcal
Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal
Atomic # 17 Polarization: -0.47 SS G_CDS: -1.48 Total: -1.95 kcal
Total LS contribution 4.91 Total: 4.91 kcal
Total: -30.29 -6.70 -36.99 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000842341913.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -113.707 kcal
(2) G-P(sol) polarization free energy of solvation -30.290 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.997 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.697 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.988 kcal
(6) G-S(sol) free energy of system = (1) + (5) -150.694 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds