Wall clock time and date at job start Tue Mar 31 2020 10:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38459 * 119.83757 * 2 1 4 4 C 1.37829 * 120.25244 * 179.97438 * 3 2 1 5 5 C 1.39738 * 119.91333 * 0.30942 * 4 3 2 6 6 C 1.47571 * 120.15695 * 179.71863 * 5 4 3 7 7 O 1.21492 * 120.00025 * 179.97438 * 6 5 4 8 8 O 1.34729 * 120.00243 * 359.97438 * 6 5 4 9 9 C 1.45197 * 117.00287 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47237 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.47092 * 179.97438 * 10 9 8 12 12 S 1.81001 * 109.47012 * 180.02562 * 11 10 9 13 13 C 1.76196 * 100.00022 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99731 * 0.02562 * 13 12 11 15 15 C 1.38802 * 120.00091 * 179.97438 * 13 12 11 16 16 N 1.31629 * 120.00132 * 179.97438 * 15 13 12 17 17 Si 1.86793 * 120.00031 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47177 * 89.99850 * 17 15 13 19 19 H 1.48505 * 109.47262 * 209.99927 * 17 15 13 20 20 H 1.48503 * 109.47469 * 330.00166 * 17 15 13 21 21 C 1.39819 * 119.68113 * 359.47789 * 5 4 3 22 22 F 1.35103 * 120.12449 * 180.23256 * 21 5 4 23 23 C 1.38389 * 119.84226 * 180.02562 * 2 1 3 24 24 F 1.35103 * 119.95657 * 0.02562 * 23 2 1 25 25 H 1.09004 * 109.47431 * 89.99682 * 1 2 3 26 26 H 1.08998 * 109.47346 * 209.99708 * 1 2 3 27 27 H 1.08997 * 109.47611 * 329.99655 * 1 2 3 28 28 H 1.08007 * 119.87264 * 0.02562 * 3 2 1 29 29 H 1.08002 * 120.03967 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47206 * 299.99442 * 9 8 6 31 31 H 1.08995 * 109.47099 * 59.99783 * 9 8 6 32 32 H 1.08994 * 109.47335 * 300.00114 * 10 9 8 33 33 H 1.09003 * 109.46983 * 60.00229 * 10 9 8 34 34 H 1.08994 * 109.47353 * 300.00384 * 11 10 9 35 35 H 1.09003 * 109.46791 * 60.00392 * 11 10 9 36 36 H 0.96995 * 120.00567 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.2010 0.0000 4 6 3.5740 1.2110 0.0005 5 6 4.2797 0.0049 -0.0055 6 6 5.7553 0.0093 -0.0112 7 8 6.3660 -1.0410 -0.0159 8 8 6.4255 1.1781 -0.0112 9 6 7.8757 1.1065 -0.0175 10 6 8.4563 2.5221 -0.0172 11 6 9.9844 2.4466 -0.0233 12 16 10.6712 4.1212 -0.0220 13 6 12.3928 3.7459 -0.0303 14 1 12.7211 2.7170 -0.0347 15 6 13.3269 4.7725 -0.0323 16 7 14.6130 4.4922 -0.0380 17 14 12.7590 6.5520 -0.0255 18 1 12.6151 7.0203 1.3764 19 1 13.7603 7.3939 -0.7283 20 1 11.4501 6.6567 -0.7191 21 6 3.5808 -1.2061 -0.0009 22 9 4.2540 -2.3775 -0.0019 23 6 2.1955 -1.2004 -0.0005 24 9 1.5159 -2.3680 -0.0016 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6510 2.1337 0.0004 29 1 4.1079 2.1499 0.0009 30 1 8.2171 0.5733 0.8697 31 1 8.2094 0.5776 -0.9102 32 1 8.1150 3.0550 -0.9045 33 1 8.1226 3.0514 0.8754 34 1 10.3255 1.9137 0.8643 35 1 10.3185 1.9171 -0.9156 36 1 15.2658 5.2095 -0.0398 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869681294.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:21 Heat of formation + Delta-G solvation = -166.561766 kcal Electronic energy + Delta-G solvation = -22415.075060 eV Core-core repulsion = 18433.215743 eV Total energy + Delta-G solvation = -3981.859317 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.073 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.92464 -48.98830 -40.75977 -39.28718 -36.83056 -33.88616 -33.34469 -32.47831 -30.97996 -28.68650 -26.61263 -25.63562 -23.66683 -23.36047 -21.63944 -21.39272 -18.84130 -17.87935 -17.64981 -17.47483 -17.06330 -16.91716 -16.56990 -16.24502 -15.40867 -15.09008 -15.03060 -14.82252 -14.76201 -14.41639 -14.02231 -13.69049 -13.42478 -13.02028 -12.93715 -12.85378 -12.53678 -12.36763 -12.22720 -12.18405 -11.59309 -11.28580 -11.13693 -11.02243 -10.84990 -10.43854 -10.30621 -9.85382 -9.52402 -9.33713 -9.04792 -8.64872 -7.01138 -6.31995 -4.05747 -0.13047 0.34973 2.01439 2.17229 2.90671 2.94911 3.18242 3.26988 3.41367 3.51676 3.77200 3.91161 4.02514 4.25444 4.27884 4.32696 4.71452 4.75689 4.92038 4.94856 4.97947 5.06715 5.07545 5.14001 5.31796 5.33134 5.38127 5.44490 5.56192 5.62776 5.69115 5.96594 6.06789 6.23485 6.28213 6.50618 7.45711 7.91518 8.41040 9.13116 10.77381 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.034438 B = 0.002089 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.864382 B =13397.183288 C =14178.989506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.057 4.057 3 C -0.118 4.118 4 C -0.035 4.035 5 C -0.141 4.141 6 C 0.507 3.493 7 O -0.489 6.489 8 O -0.348 6.348 9 C 0.074 3.926 10 C -0.101 4.101 11 C -0.085 4.085 12 S -0.206 6.206 13 C -0.505 4.505 14 H 0.089 0.911 15 C 0.092 3.908 16 N -0.880 5.880 17 Si 0.862 3.138 18 H -0.268 1.268 19 H -0.275 1.275 20 H -0.237 1.237 21 C 0.137 3.863 22 F -0.102 7.102 23 C 0.049 3.951 24 F -0.122 7.122 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.151 0.849 29 H 0.160 0.840 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.845 -7.057 -0.014 31.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.058 4.058 3 C -0.136 4.136 4 C -0.053 4.053 5 C -0.143 4.143 6 C 0.350 3.650 7 O -0.377 6.377 8 O -0.264 6.264 9 C -0.001 4.001 10 C -0.139 4.139 11 C -0.233 4.233 12 S 0.022 5.978 13 C -0.653 4.653 14 H 0.107 0.893 15 C -0.117 4.117 16 N -0.516 5.516 17 Si 0.687 3.313 18 H -0.193 1.193 19 H -0.200 1.200 20 H -0.161 1.161 21 C 0.116 3.884 22 F -0.080 7.080 23 C 0.029 3.971 24 F -0.100 7.100 25 H 0.104 0.896 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.169 0.831 29 H 0.177 0.823 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -30.918 -6.379 -0.012 31.570 hybrid contribution 0.973 -1.013 0.025 1.405 sum -29.946 -7.392 0.012 30.845 Atomic orbital electron populations 1.20881 0.88770 1.04345 1.03800 1.20173 0.97897 0.90950 0.96752 1.21050 0.93693 0.97703 1.01142 1.21549 0.94067 0.97508 0.92227 1.19061 0.90974 0.92889 1.11358 1.20581 0.87825 0.82553 0.74042 1.90932 1.69661 1.32661 1.44422 1.86472 1.23538 1.32717 1.83718 1.23317 0.73939 0.99693 1.03179 1.21337 0.94174 0.93908 1.04477 1.22949 0.95019 1.01037 1.04330 1.84143 1.08146 1.07937 1.97563 1.22117 0.86948 0.97495 1.58697 0.89283 1.24800 0.94132 0.99450 0.93309 1.69933 1.00179 1.33523 1.47991 0.86666 0.80684 0.84239 0.79719 1.19323 1.20042 1.16147 1.17616 0.88216 0.81854 1.00755 1.91648 1.79689 1.44004 1.92659 1.17239 0.87495 0.82776 1.09574 1.91544 1.79116 1.45182 1.94154 0.89630 0.90446 0.89850 0.83107 0.82266 0.90689 0.90693 0.90143 0.90160 0.90949 0.90907 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.42 9.82 36.00 0.35 -0.06 16 2 C -0.06 -0.34 5.89 -104.49 -0.62 -0.96 16 3 C -0.12 -0.58 9.67 -39.65 -0.38 -0.96 16 4 C -0.04 -0.24 9.61 -39.17 -0.38 -0.62 16 5 C -0.14 -1.45 5.88 -104.94 -0.62 -2.07 16 6 C 0.51 6.64 7.89 34.54 0.27 6.91 16 7 O -0.49 -7.93 15.13 -19.26 -0.29 -8.22 16 8 O -0.35 -4.34 9.47 -40.57 -0.38 -4.72 16 9 C 0.07 0.97 5.48 37.16 0.20 1.18 16 10 C -0.10 -1.45 5.60 -26.73 -0.15 -1.60 16 11 C -0.08 -1.57 5.67 37.16 0.21 -1.36 16 12 S -0.21 -4.86 19.41 -107.50 -2.09 -6.95 16 13 C -0.51 -14.44 10.04 30.94 0.31 -14.13 16 14 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 15 C 0.09 2.65 5.50 -17.43 -0.10 2.55 16 16 N -0.88 -26.46 13.97 55.49 0.78 -25.68 16 17 Si 0.86 21.14 27.74 -169.99 -4.71 16.43 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 20 H -0.24 -5.66 6.74 56.52 0.38 -5.28 16 21 C 0.14 1.49 7.29 -38.88 -0.28 1.21 16 22 F -0.10 -1.38 15.46 2.25 0.03 -1.35 16 23 C 0.05 0.44 7.24 -39.42 -0.29 0.15 16 24 F -0.12 -1.16 16.37 2.25 0.04 -1.13 16 25 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.08 0.29 7.62 -51.93 -0.40 -0.10 16 27 H 0.08 0.14 8.08 -51.93 -0.42 -0.28 16 28 H 0.15 0.29 8.06 -52.48 -0.42 -0.14 16 29 H 0.16 0.87 7.61 -52.49 -0.40 0.47 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.07 1.34 8.14 -51.92 -0.42 0.92 16 35 H 0.07 1.35 8.14 -51.92 -0.42 0.92 16 36 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 338.79 15.07 5.11 5.11 Total: -1.00 -32.99 338.79 -7.15 -40.15 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: -4.17 Total: -3.88 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -1.46 Total: -9.76 kcal Atomic # 7 Polarization: -26.46 SS G_CDS: 0.78 Total: -25.68 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.68 Total: -12.95 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.07 Total: -2.47 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.71 Total: 16.43 kcal Atomic # 16 Polarization: -4.86 SS G_CDS: -2.09 Total: -6.95 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.99 -7.15 -40.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869681294.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.414 kcal (2) G-P(sol) polarization free energy of solvation -32.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds