Wall clock time and date at job start Tue Mar 31 2020 10:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38459 * 119.83757 * 2 1 4 4 C 1.37829 * 120.25244 * 179.97438 * 3 2 1 5 5 C 1.39738 * 119.91333 * 0.30942 * 4 3 2 6 6 C 1.47571 * 120.15695 * 179.71863 * 5 4 3 7 7 O 1.21492 * 120.00025 * 179.97438 * 6 5 4 8 8 O 1.34729 * 120.00243 * 359.97438 * 6 5 4 9 9 C 1.45197 * 117.00287 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47237 * 179.97438 * 9 8 6 11 11 C 1.53002 * 109.47092 * 179.97438 * 10 9 8 12 12 S 1.81001 * 109.47012 * 180.02562 * 11 10 9 13 13 C 1.76196 * 100.00022 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99731 * 0.02562 * 13 12 11 15 15 C 1.38802 * 120.00091 * 179.97438 * 13 12 11 16 16 N 1.31629 * 120.00132 * 179.97438 * 15 13 12 17 17 Si 1.86793 * 120.00031 * 0.02562 * 15 13 12 18 18 H 1.48502 * 109.47177 * 89.99850 * 17 15 13 19 19 H 1.48505 * 109.47262 * 209.99927 * 17 15 13 20 20 H 1.48503 * 109.47469 * 330.00166 * 17 15 13 21 21 C 1.39819 * 119.68113 * 359.47789 * 5 4 3 22 22 F 1.35103 * 120.12449 * 180.23256 * 21 5 4 23 23 C 1.38389 * 119.84226 * 180.02562 * 2 1 3 24 24 F 1.35103 * 119.95657 * 0.02562 * 23 2 1 25 25 H 1.09004 * 109.47431 * 89.99682 * 1 2 3 26 26 H 1.08998 * 109.47346 * 209.99708 * 1 2 3 27 27 H 1.08997 * 109.47611 * 329.99655 * 1 2 3 28 28 H 1.08007 * 119.87264 * 0.02562 * 3 2 1 29 29 H 1.08002 * 120.03967 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.47206 * 299.99442 * 9 8 6 31 31 H 1.08995 * 109.47099 * 59.99783 * 9 8 6 32 32 H 1.08994 * 109.47335 * 300.00114 * 10 9 8 33 33 H 1.09003 * 109.46983 * 60.00229 * 10 9 8 34 34 H 1.08994 * 109.47353 * 300.00384 * 11 10 9 35 35 H 1.09003 * 109.46791 * 60.00392 * 11 10 9 36 36 H 0.96995 * 120.00567 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.2010 0.0000 4 6 3.5740 1.2110 0.0005 5 6 4.2797 0.0049 -0.0055 6 6 5.7553 0.0093 -0.0112 7 8 6.3660 -1.0410 -0.0159 8 8 6.4255 1.1781 -0.0112 9 6 7.8757 1.1065 -0.0175 10 6 8.4563 2.5221 -0.0172 11 6 9.9844 2.4466 -0.0233 12 16 10.6712 4.1212 -0.0220 13 6 12.3928 3.7459 -0.0303 14 1 12.7211 2.7170 -0.0347 15 6 13.3269 4.7725 -0.0323 16 7 14.6130 4.4922 -0.0380 17 14 12.7590 6.5520 -0.0255 18 1 12.6151 7.0203 1.3764 19 1 13.7603 7.3939 -0.7283 20 1 11.4501 6.6567 -0.7191 21 6 3.5808 -1.2061 -0.0009 22 9 4.2540 -2.3775 -0.0019 23 6 2.1955 -1.2004 -0.0005 24 9 1.5159 -2.3680 -0.0016 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 1.6510 2.1337 0.0004 29 1 4.1079 2.1499 0.0009 30 1 8.2171 0.5733 0.8697 31 1 8.2094 0.5776 -0.9102 32 1 8.1150 3.0550 -0.9045 33 1 8.1226 3.0514 0.8754 34 1 10.3255 1.9137 0.8643 35 1 10.3185 1.9171 -0.9156 36 1 15.2658 5.2095 -0.0398 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869681294.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:20 Heat of formation + Delta-G solvation = -184.913298 kcal Electronic energy + Delta-G solvation = -22415.870842 eV Core-core repulsion = 18433.215743 eV Total energy + Delta-G solvation = -3982.655099 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.073 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.69442 -49.77266 -41.72537 -39.94228 -37.91484 -35.02354 -34.68392 -34.03249 -31.58025 -29.33651 -28.10414 -27.47952 -24.43688 -23.93483 -22.81671 -22.29745 -19.80331 -19.45827 -18.60139 -18.51494 -17.99150 -17.76363 -17.46646 -17.12187 -17.06131 -16.25202 -16.11090 -15.97772 -15.64645 -15.38260 -14.95177 -14.58407 -14.39502 -14.24726 -14.20387 -14.03555 -13.45077 -13.30514 -13.04795 -12.87767 -12.80596 -12.74155 -12.61626 -12.44574 -12.28113 -11.84967 -11.65371 -11.57378 -11.16161 -10.60819 -10.10386 -9.97114 -8.99999 -8.51690 -6.23967 -0.80335 -0.25011 1.01194 1.18333 1.29410 1.34099 1.49483 1.77389 2.24747 2.25309 2.52504 2.65722 2.86273 3.12493 3.21227 3.49930 3.57593 3.82262 3.83742 3.92285 4.07608 4.24011 4.26970 4.32187 4.50955 4.64884 4.74357 4.77128 4.83752 4.92173 4.99103 5.03127 5.12931 5.17307 5.27576 5.55013 5.69359 6.10555 6.44765 6.91534 8.61387 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.034438 B = 0.002089 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.864382 B =13397.183288 C =14178.989506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.042 4.042 3 C -0.098 4.098 4 C -0.024 4.024 5 C -0.161 4.161 6 C 0.507 3.493 7 O -0.531 6.531 8 O -0.337 6.337 9 C 0.078 3.922 10 C -0.085 4.085 11 C -0.077 4.077 12 S -0.200 6.200 13 C -0.527 4.527 14 H 0.049 0.951 15 C 0.035 3.965 16 N -0.923 5.923 17 Si 0.928 3.072 18 H -0.260 1.260 19 H -0.265 1.265 20 H -0.224 1.224 21 C 0.105 3.895 22 F -0.129 7.129 23 C 0.035 3.965 24 F -0.131 7.131 25 H 0.099 0.901 26 H 0.071 0.929 27 H 0.111 0.889 28 H 0.197 0.803 29 H 0.180 0.820 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.443 -4.282 -0.040 34.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.043 4.043 3 C -0.115 4.115 4 C -0.042 4.042 5 C -0.163 4.163 6 C 0.353 3.647 7 O -0.422 6.422 8 O -0.254 6.254 9 C 0.003 3.997 10 C -0.123 4.123 11 C -0.225 4.225 12 S 0.028 5.972 13 C -0.675 4.675 14 H 0.068 0.932 15 C -0.170 4.170 16 N -0.561 5.561 17 Si 0.749 3.251 18 H -0.185 1.185 19 H -0.189 1.189 20 H -0.147 1.147 21 C 0.085 3.915 22 F -0.108 7.108 23 C 0.015 3.985 24 F -0.110 7.110 25 H 0.117 0.883 26 H 0.089 0.911 27 H 0.129 0.871 28 H 0.214 0.786 29 H 0.197 0.803 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -34.535 -3.604 -0.039 34.722 hybrid contribution 1.983 -1.969 0.036 2.794 sum -32.552 -5.573 -0.003 33.026 Atomic orbital electron populations 1.21031 0.86494 1.05471 1.04919 1.20614 0.99418 0.90023 0.94241 1.21549 0.92820 0.98866 0.98292 1.21860 0.95051 0.96651 0.90609 1.19020 0.89233 0.94071 1.13979 1.21130 0.88983 0.81887 0.72693 1.90912 1.70670 1.33939 1.46648 1.86449 1.22793 1.32491 1.83621 1.23117 0.74697 0.98763 1.03157 1.21146 0.90859 0.94780 1.05560 1.22986 0.97758 0.97611 1.04168 1.83726 1.04151 1.11750 1.97585 1.22369 0.90569 0.95990 1.58562 0.93248 1.25846 0.94144 1.04335 0.92675 1.70045 1.01632 1.35340 1.49057 0.85676 0.80940 0.78202 0.80294 1.18489 1.18909 1.14725 1.18010 0.89218 0.81339 1.02960 1.91566 1.80423 1.45545 1.93237 1.17505 0.86810 0.83608 1.10574 1.91514 1.79078 1.46038 1.94357 0.88295 0.91054 0.87055 0.78617 0.80303 0.90870 0.90869 0.89047 0.89047 0.91210 0.91169 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.37 9.82 71.23 0.70 0.33 16 2 C -0.04 -0.37 5.89 -19.78 -0.12 -0.49 16 3 C -0.10 -0.52 9.67 22.23 0.21 -0.30 16 4 C -0.02 -0.25 9.61 22.54 0.22 -0.03 16 5 C -0.16 -3.21 5.88 -20.07 -0.12 -3.33 16 6 C 0.51 13.31 7.89 70.28 0.55 13.87 16 7 O -0.53 -17.99 15.13 19.86 0.30 -17.69 16 8 O -0.34 -7.95 9.47 -56.39 -0.53 -8.48 16 9 C 0.08 1.99 5.48 71.98 0.39 2.38 16 10 C -0.09 -2.28 5.60 30.60 0.17 -2.11 16 11 C -0.08 -2.79 5.67 71.98 0.41 -2.38 16 12 S -0.20 -9.24 19.41 -56.49 -1.10 -10.34 16 13 C -0.53 -30.75 10.04 67.95 0.68 -30.06 16 14 H 0.05 3.15 8.03 -2.91 -0.02 3.13 16 15 C 0.03 2.02 5.50 84.86 0.47 2.48 16 16 N -0.92 -56.65 13.97 21.65 0.30 -56.35 16 17 Si 0.93 43.10 27.74 68.60 1.90 45.00 16 18 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.22 -9.84 6.74 99.48 0.67 -9.17 16 21 C 0.11 2.37 7.29 22.72 0.17 2.53 16 22 F -0.13 -3.80 15.46 44.97 0.70 -3.11 16 23 C 0.04 0.60 7.24 22.37 0.16 0.76 16 24 F -0.13 -2.54 16.37 44.97 0.74 -1.80 16 25 H 0.10 0.12 8.14 -2.38 -0.02 0.10 16 26 H 0.07 0.35 7.62 -2.39 -0.02 0.34 16 27 H 0.11 -0.23 8.08 -2.39 -0.02 -0.25 16 28 H 0.20 -0.63 8.06 -2.91 -0.02 -0.65 16 29 H 0.18 1.19 7.61 -2.91 -0.02 1.16 16 30 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.09 2.30 8.14 -2.39 -0.02 2.29 16 33 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.07 2.58 8.14 -2.40 -0.02 2.56 16 35 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -75.38 338.79 7.28 -68.10 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: 1.07 Total: 1.02 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: 3.90 Total: -16.34 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: 0.30 Total: -56.35 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.23 Total: -26.18 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 1.43 Total: -4.91 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.90 Total: 45.00 kcal Atomic # 16 Polarization: -9.24 SS G_CDS: -1.10 Total: -10.34 kcal Total: -75.38 7.28 -68.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869681294.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.817 kcal (2) G-P(sol) polarization free energy of solvation -75.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds