Wall clock time and date at job start Tue Mar 31 2020 11:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31268 * 1 3 3 Si 1.86798 * 119.99834 * 2 1 4 4 H 1.48504 * 109.47111 * 275.47286 * 3 2 1 5 5 H 1.48495 * 109.47430 * 35.47987 * 3 2 1 6 6 H 1.48504 * 109.46760 * 155.47736 * 3 2 1 7 7 C 1.39192 * 119.99644 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00438 * 349.51238 * 7 2 1 9 9 N 1.36661 * 119.99983 * 169.51902 * 7 2 1 10 10 C 1.34779 * 119.99591 * 312.00393 * 9 7 2 11 11 O 1.21611 * 119.99951 * 2.92151 * 10 9 7 12 12 C 1.47680 * 119.99785 * 182.92205 * 10 9 7 13 13 C 1.39076 * 121.11863 * 316.84330 * 12 10 9 14 14 C 1.39142 * 119.56711 * 180.02562 * 13 12 10 15 15 N 1.31059 * 121.90370 * 359.97438 * 14 13 12 16 16 C 1.33572 * 121.85256 * 0.02562 * 15 14 13 17 17 C 1.40662 * 120.96461 * 180.02562 * 16 15 14 18 18 C 1.36191 * 119.73637 * 179.97438 * 17 16 15 19 19 Cl 1.73607 * 119.49073 * 180.02562 * 18 17 16 20 20 C 1.39449 * 121.02368 * 0.02869 * 18 17 16 21 21 C 1.36257 * 120.81098 * 359.67413 * 20 18 17 22 22 C 1.40076 * 119.66025 * 0.59008 * 21 20 18 23 23 C 1.46494 * 119.99942 * 132.00180 * 9 7 2 24 24 C 1.52998 * 117.50342 * 4.09285 * 23 9 7 25 25 C 1.53006 * 117.49967 * 295.43067 * 23 9 7 26 26 H 0.97000 * 120.00355 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.21578 * 359.97287 * 13 12 10 28 28 H 1.08005 * 119.04915 * 179.97438 * 14 13 12 29 29 H 1.07994 * 120.12988 * 359.95847 * 17 16 15 30 30 H 1.08000 * 119.60139 * 179.97438 * 20 18 17 31 31 H 1.08006 * 120.16893 * 180.02562 * 21 20 18 32 32 H 1.09002 * 115.55048 * 149.76783 * 23 9 7 33 33 H 1.09003 * 117.49522 * 0.02562 * 24 23 9 34 34 H 1.08996 * 117.50073 * 145.01998 * 24 23 9 35 35 H 1.09006 * 117.49669 * 214.98091 * 25 23 9 36 36 H 1.08993 * 117.50045 * 0.02562 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3127 0.0000 0.0000 3 14 2.2466 1.6177 0.0000 4 1 2.3785 2.1132 -1.3937 5 1 1.5068 2.6165 0.8126 6 1 3.5973 1.4095 0.5811 7 6 2.0086 -1.2055 -0.0005 8 1 1.4821 -2.1331 0.1693 9 7 3.3581 -1.2153 -0.2158 10 6 3.8812 -0.5208 -1.2456 11 8 3.1590 0.1571 -1.9511 12 6 5.3315 -0.5831 -1.5173 13 6 6.2599 -0.5130 -0.4842 14 6 7.6188 -0.5743 -0.7770 15 7 8.0577 -0.6977 -2.0057 16 6 7.2251 -0.7711 -3.0476 17 6 7.7167 -0.9039 -4.3588 18 6 6.8452 -0.9771 -5.4028 19 17 7.4588 -1.1416 -7.0185 20 6 5.4675 -0.9218 -5.1941 21 6 4.9563 -0.7995 -3.9370 22 6 5.8245 -0.7159 -2.8409 23 6 4.2360 -1.9807 0.6727 24 6 3.5746 -2.8245 1.7643 25 6 4.3192 -1.5395 2.1354 26 1 -0.4851 0.8400 -0.0004 27 1 5.9283 -0.4107 0.5385 28 1 8.3325 -0.5186 0.0317 29 1 8.7809 -0.9475 -4.5370 30 1 4.7972 -0.9815 -6.0388 31 1 3.8875 -0.7581 -3.7873 32 1 5.1430 -2.3736 0.2132 33 1 2.4861 -2.8104 1.8210 34 1 4.0466 -3.7722 2.0232 35 1 5.2808 -1.6425 2.6383 36 1 3.7204 -0.6800 2.4367 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930616421.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:05 Heat of formation + Delta-G solvation = 62.782537 kcal Electronic energy + Delta-G solvation = -23908.433628 eV Core-core repulsion = 20385.164907 eV Total energy + Delta-G solvation = -3523.268722 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.98121 -39.16833 -37.47426 -36.71116 -36.06847 -33.50936 -33.00151 -31.68760 -30.42769 -29.97925 -25.98775 -24.28582 -23.61505 -22.70083 -21.99974 -21.44828 -19.71553 -18.49409 -17.59609 -17.17044 -16.60674 -15.81346 -15.62788 -15.12332 -14.49805 -14.40625 -14.27582 -14.04493 -13.77815 -13.44145 -13.24608 -13.17005 -12.85409 -12.64815 -11.98715 -11.76798 -11.57197 -11.31573 -11.14399 -11.06600 -10.89274 -10.47248 -10.34967 -10.23559 -10.20743 -9.79534 -9.64718 -8.92005 -8.69325 -8.67331 -8.18111 -7.72479 -6.43408 -4.27802 0.23943 0.75213 1.81018 1.97068 2.81670 3.12805 3.30877 3.50612 3.58721 3.94377 4.14219 4.27163 4.30747 4.46052 4.68046 4.80666 4.87471 4.94876 5.01672 5.07427 5.23658 5.29721 5.39317 5.53124 5.59815 5.66436 5.86168 5.93992 5.99942 6.02254 6.13111 6.16140 6.42557 6.49514 6.59145 6.71983 6.73451 7.55717 7.74238 7.88921 8.45383 8.57185 9.10412 9.46363 10.58695 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.016840 B = 0.004806 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.266713 B = 5824.887117 C = 6671.464261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.089 3.911 3 Si 0.923 3.077 4 H -0.256 1.256 5 H -0.309 1.309 6 H -0.281 1.281 7 C -0.339 4.339 8 H 0.103 0.897 9 N -0.411 5.411 10 C 0.480 3.520 11 O -0.534 6.534 12 C -0.030 4.030 13 C -0.167 4.167 14 C 0.138 3.862 15 N -0.479 5.479 16 C 0.138 3.862 17 C -0.095 4.095 18 C -0.009 4.009 19 Cl -0.071 7.071 20 C -0.126 4.126 21 C -0.057 4.057 22 C -0.076 4.076 23 C 0.051 3.949 24 C -0.168 4.168 25 C -0.196 4.196 26 H 0.277 0.723 27 H 0.149 0.851 28 H 0.163 0.837 29 H 0.144 0.856 30 H 0.138 0.862 31 H 0.158 0.842 32 H 0.115 0.885 33 H 0.113 0.887 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.965 -3.279 -2.820 14.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.122 4.122 3 Si 0.754 3.246 4 H -0.182 1.182 5 H -0.239 1.239 6 H -0.207 1.207 7 C -0.465 4.465 8 H 0.120 0.880 9 N -0.129 5.129 10 C 0.272 3.728 11 O -0.418 6.418 12 C -0.042 4.042 13 C -0.188 4.188 14 C -0.033 4.033 15 N -0.188 5.188 16 C 0.016 3.984 17 C -0.114 4.114 18 C -0.038 4.038 19 Cl -0.042 7.042 20 C -0.145 4.145 21 C -0.075 4.075 22 C -0.079 4.079 23 C -0.055 4.055 24 C -0.205 4.205 25 C -0.235 4.235 26 H 0.088 0.912 27 H 0.166 0.834 28 H 0.180 0.820 29 H 0.162 0.838 30 H 0.156 0.844 31 H 0.176 0.824 32 H 0.133 0.867 33 H 0.131 0.869 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 14.313 -2.944 -3.586 15.046 hybrid contribution -0.457 0.847 0.217 0.987 sum 13.856 -2.097 -3.369 14.413 Atomic orbital electron populations 1.69610 1.06845 1.28810 1.43517 1.25490 0.95106 0.99815 0.91768 0.86063 0.78628 0.81443 0.78426 1.18189 1.23875 1.20666 1.18870 0.79360 0.95497 1.52744 0.87964 1.42987 1.06682 1.42048 1.21185 1.18041 0.85918 0.86512 0.82375 1.90595 1.59940 1.42095 1.49203 1.20841 0.95724 0.95018 0.92575 1.22676 0.93814 1.01501 1.00800 1.22859 0.93713 0.93038 0.93702 1.67775 1.38463 1.13310 0.99221 1.18517 0.88396 0.98630 0.92824 1.20505 1.00203 1.01649 0.89082 1.20581 0.93747 1.03643 0.85809 1.98365 1.87819 1.96080 1.21969 1.20823 0.92846 1.02486 0.98308 1.21441 1.01807 0.93778 0.90513 1.18725 0.93892 1.01687 0.93626 1.22059 0.96316 1.00590 0.86491 1.23182 1.01888 0.93876 1.01597 1.23343 1.01902 0.99868 0.98386 0.91248 0.83371 0.81970 0.83834 0.84438 0.82441 0.86728 0.86878 0.89195 0.89044 0.88306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.44 13.95 55.51 0.77 -23.67 16 2 C 0.09 2.46 5.07 -17.44 -0.09 2.37 16 3 Si 0.92 23.58 24.45 -169.99 -4.16 19.42 16 4 H -0.26 -6.96 6.44 56.52 0.36 -6.59 16 5 H -0.31 -7.74 7.11 56.52 0.40 -7.34 16 6 H -0.28 -6.86 6.96 56.52 0.39 -6.47 16 7 C -0.34 -8.79 8.46 -15.05 -0.13 -8.92 16 8 H 0.10 2.78 7.30 -52.48 -0.38 2.39 16 9 N -0.41 -9.23 2.44 -108.86 -0.27 -9.50 16 10 C 0.48 10.96 5.04 -12.40 -0.06 10.90 16 11 O -0.53 -13.93 10.45 5.27 0.06 -13.87 16 12 C -0.03 -0.57 5.22 -104.34 -0.54 -1.11 16 13 C -0.17 -2.60 7.69 -38.94 -0.30 -2.89 16 14 C 0.14 1.85 11.13 -17.55 -0.20 1.65 16 15 N -0.48 -7.29 10.30 -11.03 -0.11 -7.40 16 16 C 0.14 2.24 6.61 -84.88 -0.56 1.68 16 17 C -0.09 -1.34 9.73 -39.40 -0.38 -1.72 16 18 C -0.01 -0.13 6.27 -39.87 -0.25 -0.38 16 19 Cl -0.07 -0.83 28.91 -51.86 -1.50 -2.33 16 20 C -0.13 -1.82 9.73 -39.84 -0.39 -2.21 16 21 C -0.06 -0.98 9.18 -39.61 -0.36 -1.34 16 22 C -0.08 -1.37 5.76 -106.50 -0.61 -1.98 16 23 C 0.05 0.88 4.43 -67.93 -0.30 0.58 16 24 C -0.17 -2.64 9.82 -26.69 -0.26 -2.90 16 25 C -0.20 -3.01 9.50 -26.69 -0.25 -3.26 16 26 H 0.28 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.15 2.15 5.83 -52.49 -0.31 1.85 16 28 H 0.16 1.50 8.06 -52.48 -0.42 1.08 16 29 H 0.14 1.76 8.06 -52.49 -0.42 1.33 16 30 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 31 H 0.16 3.03 6.09 -52.48 -0.32 2.71 16 32 H 0.12 1.77 6.20 -51.93 -0.32 1.45 16 33 H 0.11 2.05 6.64 -51.93 -0.35 1.70 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.10 1.74 8.14 -51.93 -0.42 1.31 16 LS Contribution 313.62 15.07 4.73 4.73 Total: -1.00 -30.37 313.62 -8.57 -38.94 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -3.39 Total: 3.22 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -4.69 Total: -9.54 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.39 Total: -40.57 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.06 Total: -13.87 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -4.16 Total: 19.42 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -1.50 Total: -2.33 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.37 -8.57 -38.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930616421.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.719 kcal (2) G-P(sol) polarization free energy of solvation -30.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds