Wall clock time and date at job start Tue Mar 31 2020 11:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31268 * 1 3 3 Si 1.86798 * 119.99834 * 2 1 4 4 H 1.48504 * 109.47111 * 275.47286 * 3 2 1 5 5 H 1.48495 * 109.47430 * 35.47987 * 3 2 1 6 6 H 1.48504 * 109.46760 * 155.47736 * 3 2 1 7 7 C 1.39192 * 119.99644 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00438 * 349.51238 * 7 2 1 9 9 N 1.36661 * 119.99983 * 169.51902 * 7 2 1 10 10 C 1.34779 * 119.99591 * 312.00393 * 9 7 2 11 11 O 1.21611 * 119.99951 * 2.92151 * 10 9 7 12 12 C 1.47680 * 119.99785 * 182.92205 * 10 9 7 13 13 C 1.39076 * 121.11863 * 316.84330 * 12 10 9 14 14 C 1.39142 * 119.56711 * 180.02562 * 13 12 10 15 15 N 1.31059 * 121.90370 * 359.97438 * 14 13 12 16 16 C 1.33572 * 121.85256 * 0.02562 * 15 14 13 17 17 C 1.40662 * 120.96461 * 180.02562 * 16 15 14 18 18 C 1.36191 * 119.73637 * 179.97438 * 17 16 15 19 19 Cl 1.73607 * 119.49073 * 180.02562 * 18 17 16 20 20 C 1.39449 * 121.02368 * 0.02869 * 18 17 16 21 21 C 1.36257 * 120.81098 * 359.67413 * 20 18 17 22 22 C 1.40076 * 119.66025 * 0.59008 * 21 20 18 23 23 C 1.46494 * 119.99942 * 132.00180 * 9 7 2 24 24 C 1.52998 * 117.50342 * 4.09285 * 23 9 7 25 25 C 1.53006 * 117.49967 * 295.43067 * 23 9 7 26 26 H 0.97000 * 120.00355 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.21578 * 359.97287 * 13 12 10 28 28 H 1.08005 * 119.04915 * 179.97438 * 14 13 12 29 29 H 1.07994 * 120.12988 * 359.95847 * 17 16 15 30 30 H 1.08000 * 119.60139 * 179.97438 * 20 18 17 31 31 H 1.08006 * 120.16893 * 180.02562 * 21 20 18 32 32 H 1.09002 * 115.55048 * 149.76783 * 23 9 7 33 33 H 1.09003 * 117.49522 * 0.02562 * 24 23 9 34 34 H 1.08996 * 117.50073 * 145.01998 * 24 23 9 35 35 H 1.09006 * 117.49669 * 214.98091 * 25 23 9 36 36 H 1.08993 * 117.50045 * 0.02562 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3127 0.0000 0.0000 3 14 2.2466 1.6177 0.0000 4 1 2.3785 2.1132 -1.3937 5 1 1.5068 2.6165 0.8126 6 1 3.5973 1.4095 0.5811 7 6 2.0086 -1.2055 -0.0005 8 1 1.4821 -2.1331 0.1693 9 7 3.3581 -1.2153 -0.2158 10 6 3.8812 -0.5208 -1.2456 11 8 3.1590 0.1571 -1.9511 12 6 5.3315 -0.5831 -1.5173 13 6 6.2599 -0.5130 -0.4842 14 6 7.6188 -0.5743 -0.7770 15 7 8.0577 -0.6977 -2.0057 16 6 7.2251 -0.7711 -3.0476 17 6 7.7167 -0.9039 -4.3588 18 6 6.8452 -0.9771 -5.4028 19 17 7.4588 -1.1416 -7.0185 20 6 5.4675 -0.9218 -5.1941 21 6 4.9563 -0.7995 -3.9370 22 6 5.8245 -0.7159 -2.8409 23 6 4.2360 -1.9807 0.6727 24 6 3.5746 -2.8245 1.7643 25 6 4.3192 -1.5395 2.1354 26 1 -0.4851 0.8400 -0.0004 27 1 5.9283 -0.4107 0.5385 28 1 8.3325 -0.5186 0.0317 29 1 8.7809 -0.9475 -4.5370 30 1 4.7972 -0.9815 -6.0388 31 1 3.8875 -0.7581 -3.7873 32 1 5.1430 -2.3736 0.2132 33 1 2.4861 -2.8104 1.8210 34 1 4.0466 -3.7722 2.0232 35 1 5.2808 -1.6425 2.6383 36 1 3.7204 -0.6800 2.4367 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930616421.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:35:04 Heat of formation + Delta-G solvation = 44.312503 kcal Electronic energy + Delta-G solvation = -23909.234549 eV Core-core repulsion = 20385.164907 eV Total energy + Delta-G solvation = -3524.069643 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.30151 -40.73204 -38.62451 -38.21884 -37.16350 -35.19515 -34.50286 -33.48408 -31.61276 -31.22638 -27.71892 -25.70911 -24.81257 -24.10835 -23.25495 -22.87375 -21.34936 -19.84137 -19.06180 -18.45285 -18.15395 -17.44841 -17.15919 -16.38110 -16.01375 -15.63894 -15.58215 -15.56017 -15.21544 -14.98935 -14.75151 -14.62549 -14.43425 -13.88410 -13.59132 -13.09988 -12.97424 -12.77045 -12.51068 -12.31056 -12.21601 -12.10907 -12.04501 -11.74764 -11.54269 -11.24874 -11.05672 -10.92304 -10.38458 -9.83410 -9.49802 -9.39769 -8.51642 -6.35565 -0.99997 -0.42737 0.52049 0.90774 1.15817 1.24440 1.42638 1.66292 1.82643 2.29441 2.39072 2.85248 2.89490 3.14819 3.20355 3.40973 3.57138 3.62791 3.78717 3.86131 3.98980 4.07286 4.13227 4.26431 4.37466 4.42970 4.68253 4.74596 4.84232 4.87840 4.92361 4.98104 5.20485 5.21319 5.34427 5.45322 5.54614 5.57953 5.79218 6.57114 6.70195 6.71191 7.13579 7.63015 8.54558 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.016840 B = 0.004806 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.266713 B = 5824.887117 C = 6671.464261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.049 3.951 3 Si 0.966 3.034 4 H -0.288 1.288 5 H -0.305 1.305 6 H -0.263 1.263 7 C -0.332 4.332 8 H 0.078 0.922 9 N -0.428 5.428 10 C 0.484 3.516 11 O -0.577 6.577 12 C -0.067 4.067 13 C -0.142 4.142 14 C 0.149 3.851 15 N -0.473 5.473 16 C 0.126 3.874 17 C -0.083 4.083 18 C -0.012 4.012 19 Cl -0.047 7.047 20 C -0.109 4.109 21 C -0.090 4.090 22 C -0.089 4.089 23 C 0.028 3.972 24 C -0.165 4.165 25 C -0.176 4.176 26 H 0.276 0.724 27 H 0.164 0.836 28 H 0.217 0.783 29 H 0.168 0.832 30 H 0.155 0.845 31 H 0.126 0.874 32 H 0.142 0.858 33 H 0.078 0.922 34 H 0.129 0.871 35 H 0.142 0.858 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.947 -3.953 -2.256 19.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.157 4.157 3 Si 0.797 3.203 4 H -0.216 1.216 5 H -0.235 1.235 6 H -0.187 1.187 7 C -0.459 4.459 8 H 0.095 0.905 9 N -0.146 5.146 10 C 0.276 3.724 11 O -0.464 6.464 12 C -0.078 4.078 13 C -0.163 4.163 14 C -0.022 4.022 15 N -0.182 5.182 16 C 0.005 3.995 17 C -0.103 4.103 18 C -0.041 4.041 19 Cl -0.018 7.018 20 C -0.127 4.127 21 C -0.109 4.109 22 C -0.092 4.092 23 C -0.075 4.075 24 C -0.202 4.202 25 C -0.214 4.214 26 H 0.086 0.914 27 H 0.181 0.819 28 H 0.233 0.767 29 H 0.186 0.814 30 H 0.172 0.828 31 H 0.143 0.857 32 H 0.159 0.841 33 H 0.097 0.903 34 H 0.147 0.853 35 H 0.160 0.840 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 19.323 -3.641 -2.999 19.890 hybrid contribution -1.781 0.948 -0.123 2.021 sum 17.542 -2.693 -3.122 18.020 Atomic orbital electron populations 1.69682 1.07832 1.29000 1.47358 1.25993 0.95473 1.01850 0.92385 0.85371 0.78858 0.79542 0.76487 1.21621 1.23517 1.18705 1.18643 0.81407 0.94092 1.51804 0.90488 1.43104 1.05974 1.42853 1.22623 1.18689 0.87731 0.84568 0.81425 1.90553 1.61732 1.43722 1.50365 1.20555 0.93577 0.99280 0.94410 1.22967 0.94296 0.98590 1.00443 1.23633 0.93416 0.90865 0.94293 1.67895 1.38017 1.12560 0.99678 1.18710 0.87492 0.99222 0.94101 1.20778 1.01369 0.99846 0.88264 1.20576 0.93204 1.03230 0.87080 1.98377 1.87401 1.95904 1.20130 1.20990 0.93916 1.00104 0.97695 1.21216 1.00456 0.97131 0.92083 1.18847 0.94986 1.02153 0.93188 1.22367 0.96711 1.01588 0.86862 1.23218 1.00320 0.96067 1.00631 1.23442 1.03536 0.98312 0.96132 0.91414 0.81895 0.76654 0.81439 0.82764 0.85652 0.84090 0.90328 0.85267 0.83971 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.90 13.95 21.70 0.30 -54.60 16 2 C 0.05 2.82 5.07 85.01 0.43 3.25 16 3 Si 0.97 50.68 24.45 68.60 1.68 52.36 16 4 H -0.29 -16.49 6.44 99.48 0.64 -15.85 16 5 H -0.31 -15.49 7.11 99.48 0.71 -14.79 16 6 H -0.26 -12.63 6.96 99.48 0.69 -11.94 16 7 C -0.33 -18.15 8.46 84.17 0.71 -17.44 16 8 H 0.08 4.50 7.30 -2.91 -0.02 4.48 16 9 N -0.43 -19.52 2.44 -616.58 -1.51 -21.03 16 10 C 0.48 22.58 5.04 86.74 0.44 23.02 16 11 O -0.58 -31.74 10.45 -4.07 -0.04 -31.78 16 12 C -0.07 -2.47 5.22 -19.68 -0.10 -2.57 16 13 C -0.14 -3.89 7.69 22.69 0.17 -3.71 16 14 C 0.15 3.19 11.13 85.03 0.95 4.14 16 15 N -0.47 -12.25 10.30 -188.81 -1.94 -14.19 16 16 C 0.13 3.72 6.61 40.32 0.27 3.99 16 17 C -0.08 -2.09 9.73 22.38 0.22 -1.87 16 18 C -0.01 -0.31 6.27 22.08 0.14 -0.17 16 19 Cl -0.05 -0.96 28.91 -2.72 -0.08 -1.04 16 20 C -0.11 -3.07 9.73 22.10 0.22 -2.85 16 21 C -0.09 -3.19 9.18 22.25 0.20 -2.99 16 22 C -0.09 -3.12 5.76 -21.08 -0.12 -3.24 16 23 C 0.03 0.94 4.43 44.99 0.20 1.14 16 24 C -0.16 -4.90 9.82 30.62 0.30 -4.60 16 25 C -0.18 -4.84 9.50 30.62 0.29 -4.55 16 26 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 27 H 0.16 3.96 5.83 -2.91 -0.02 3.95 16 28 H 0.22 2.32 8.06 -2.91 -0.02 2.29 16 29 H 0.17 3.36 8.06 -2.91 -0.02 3.34 16 30 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 31 H 0.13 5.24 6.09 -2.91 -0.02 5.22 16 32 H 0.14 3.87 6.20 -2.39 -0.01 3.86 16 33 H 0.08 2.92 6.64 -2.39 -0.02 2.90 16 34 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 35 H 0.14 2.49 8.14 -2.38 -0.02 2.47 16 36 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -72.59 313.62 3.77 -68.82 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: 1.05 Total: 9.91 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 4.31 Total: -8.45 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -3.15 Total: -89.82 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.04 Total: -31.78 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 1.68 Total: 52.36 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.08 Total: -1.04 kcal Total: -72.59 3.77 -68.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930616421.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.128 kcal (2) G-P(sol) polarization free energy of solvation -72.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds