Wall clock time and date at job start Tue Mar 31 2020 11:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52999 * 109.47317 * 59.99960 * 3 2 1 5 5 O 1.42905 * 109.47264 * 300.00236 * 3 2 1 6 6 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 7 7 O 1.21288 * 120.00017 * 335.00339 * 6 3 2 8 8 N 1.34777 * 120.00270 * 154.99801 * 6 3 2 9 9 C 1.38887 * 120.00136 * 180.02562 * 8 6 3 10 10 N 1.29947 * 125.36507 * 180.02562 * 9 8 6 11 11 C 1.31598 * 117.13827 * 180.02562 * 10 9 8 12 12 C 1.50698 * 122.22992 * 179.97438 * 11 10 9 13 13 C 1.34655 * 115.53741 * 0.02562 * 11 10 9 14 14 S 1.76199 * 125.92911 * 179.97438 * 13 11 10 15 15 C 1.76201 * 100.00200 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99465 * 0.02562 * 15 14 13 17 17 C 1.38425 * 120.00310 * 179.97438 * 15 14 13 18 18 N 1.31813 * 119.99752 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00170 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47254 * 59.99863 * 19 17 15 21 21 H 1.48501 * 109.47225 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47083 * 299.99935 * 19 17 15 23 23 S 1.76137 * 125.36603 * 359.70035 * 9 8 6 24 24 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 29 29 H 1.09002 * 109.46716 * 60.00091 * 4 3 2 30 30 H 1.09000 * 109.47486 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.47362 * 300.00732 * 4 3 2 32 32 H 0.96696 * 114.00036 * 299.99911 * 5 3 2 33 33 H 0.97000 * 119.99668 * 0.02562 * 8 6 3 34 34 H 1.09003 * 109.46785 * 90.02179 * 12 11 10 35 35 H 1.09000 * 109.47311 * 210.02460 * 12 11 10 36 36 H 1.09001 * 109.47193 * 330.02729 * 12 11 10 37 37 H 0.97000 * 119.99821 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2492 5 8 1.5636 2.1162 -1.1668 6 6 3.5469 1.4426 -0.0006 7 8 4.1536 0.4906 0.4428 8 7 4.2206 2.5005 -0.4941 9 6 5.6095 2.5003 -0.4951 10 7 6.3613 3.4610 -0.9428 11 6 7.6638 3.2899 -0.8648 12 6 8.6414 4.3292 -1.3499 13 6 8.0648 2.1239 -0.3237 14 16 9.7347 1.6131 -0.0890 15 6 9.4711 0.0336 0.6462 16 1 8.4655 -0.3230 0.8134 17 6 10.5528 -0.7505 1.0084 18 7 11.7801 -0.3154 0.8038 19 14 10.2733 -2.4252 1.7872 20 1 9.5049 -3.2844 0.8510 21 1 11.5835 -3.0598 2.0802 22 1 9.5092 -2.2626 3.0501 23 16 6.6293 1.2014 0.1175 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 1.6499 2.1392 30 1 1.8929 3.1916 1.2490 31 1 0.4400 2.1637 1.2493 32 1 1.8489 1.7127 -1.9979 33 1 3.7354 3.2620 -0.8484 34 1 8.8786 5.0132 -0.5351 35 1 9.5537 3.8391 -1.6901 36 1 8.1990 4.8869 -2.1753 37 1 12.5381 -0.8647 1.0580 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931387387.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:52 Heat of formation + Delta-G solvation = -59.330318 kcal Electronic energy + Delta-G solvation = -21659.991976 eV Core-core repulsion = 18268.915701 eV Total energy + Delta-G solvation = -3391.076275 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.070 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.72993 -38.70530 -37.55028 -34.90029 -33.42329 -32.83720 -30.67958 -29.73946 -27.13262 -25.90883 -25.75472 -23.91138 -21.69636 -20.68574 -19.81241 -18.47555 -17.74952 -17.19640 -16.16762 -15.99927 -15.74624 -15.35151 -15.11732 -14.92910 -14.08716 -14.05418 -13.45518 -13.21773 -13.00584 -12.80059 -12.69424 -12.43817 -12.19153 -12.08375 -11.94533 -11.82530 -11.41506 -11.26255 -11.25068 -11.06899 -10.86354 -10.60181 -10.56655 -10.29269 -9.69359 -9.53636 -9.07853 -8.76341 -8.67667 -7.82738 -6.61421 -6.51935 -4.29346 1.33364 1.86594 2.34422 2.50753 2.79849 3.06439 3.11162 3.14124 3.33107 3.60260 3.72061 3.96660 4.26706 4.43866 4.57110 4.81195 5.02002 5.03473 5.12239 5.22101 5.27859 5.41153 5.50189 5.63560 5.72200 5.89886 5.97023 6.01495 6.13109 6.22592 6.43418 6.47942 6.91282 6.99840 7.23677 7.31355 7.91110 8.02352 8.50639 8.86895 10.44325 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.015704 B = 0.004107 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.569664 B = 6815.822182 C = 8384.511775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C 0.132 3.868 4 C -0.142 4.142 5 O -0.548 6.548 6 C 0.478 3.522 7 O -0.500 6.500 8 N -0.606 5.606 9 C 0.183 3.817 10 N -0.473 5.473 11 C 0.019 3.981 12 C -0.061 4.061 13 C -0.250 4.250 14 S 0.151 5.849 15 C -0.558 4.558 16 H 0.088 0.912 17 C 0.083 3.917 18 N -0.863 5.863 19 Si 0.925 3.075 20 H -0.267 1.267 21 H -0.278 1.278 22 H -0.267 1.267 23 S 0.197 5.803 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.384 0.616 33 H 0.419 0.581 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.137 3.504 -2.166 18.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.176 4.176 3 C 0.088 3.912 4 C -0.199 4.199 5 O -0.354 6.354 6 C 0.261 3.739 7 O -0.374 6.374 8 N -0.255 5.255 9 C -0.187 4.187 10 N -0.194 5.194 11 C -0.124 4.124 12 C -0.121 4.121 13 C -0.487 4.487 14 S 0.402 5.598 15 C -0.706 4.706 16 H 0.106 0.894 17 C -0.128 4.128 18 N -0.496 5.496 19 Si 0.749 3.251 20 H -0.192 1.192 21 H -0.203 1.203 22 H -0.192 1.192 23 S 0.441 5.559 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.232 0.768 33 H 0.257 0.743 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.021 3.092 -1.338 17.352 hybrid contribution -0.679 -0.920 -0.174 1.157 sum -17.700 2.172 -1.513 17.897 Atomic orbital electron populations 1.21761 0.94300 1.01884 1.02613 1.22026 0.97025 0.93949 1.04599 1.21368 0.86500 0.94625 0.88692 1.21840 1.02996 1.00942 0.94096 1.86568 1.76492 1.56696 1.15643 1.21771 0.91487 0.81994 0.78598 1.90718 1.68807 1.33596 1.44250 1.42424 1.02230 1.21192 1.59696 1.23817 0.88273 0.97739 1.08913 1.65822 1.04682 1.28254 1.20652 1.19050 0.88421 0.96278 1.08655 1.20119 0.95929 0.95706 1.00324 1.28774 1.07716 1.02368 1.09838 1.83069 0.90899 1.18078 1.67763 1.23225 0.96626 1.03301 1.47479 0.89403 1.25022 0.94103 0.99410 0.94299 1.70006 0.98151 1.38126 1.43311 0.86081 0.78083 0.80925 0.79972 1.19216 1.20333 1.19207 1.85799 0.92218 1.17689 1.60204 0.91952 0.92366 0.92208 0.89427 0.91041 0.90111 0.91203 0.89896 0.76799 0.74262 0.91856 0.91036 0.91908 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.41 37.16 0.35 -0.70 16 2 C -0.14 -1.25 4.71 -26.73 -0.13 -1.37 16 3 C 0.13 1.29 1.00 -91.78 -0.09 1.19 16 4 C -0.14 -1.22 8.47 37.16 0.31 -0.90 16 5 O -0.55 -4.51 11.62 -35.23 -0.41 -4.92 16 6 C 0.48 6.66 6.65 -10.99 -0.07 6.59 16 7 O -0.50 -8.83 13.61 5.55 0.08 -8.76 16 8 N -0.61 -8.91 5.31 -11.78 -0.06 -8.98 16 9 C 0.18 3.53 8.40 -87.20 -0.73 2.80 16 10 N -0.47 -9.55 10.55 -9.79 -0.10 -9.65 16 11 C 0.02 0.39 6.73 -83.96 -0.57 -0.17 16 12 C -0.06 -1.08 10.02 36.00 0.36 -0.72 16 13 C -0.25 -5.79 6.67 29.46 0.20 -5.59 16 14 S 0.15 3.80 20.74 -107.50 -2.23 1.58 16 15 C -0.56 -15.20 9.26 30.80 0.29 -14.91 16 16 H 0.09 2.37 5.97 -52.49 -0.31 2.06 16 17 C 0.08 2.21 5.49 -17.49 -0.10 2.11 16 18 N -0.86 -23.76 13.22 55.47 0.73 -23.03 16 19 Si 0.92 20.65 29.55 -169.99 -5.02 15.63 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 23 S 0.20 4.34 18.35 -107.50 -1.97 2.37 16 24 H 0.06 0.43 7.68 -51.93 -0.40 0.03 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.39 6.43 -51.93 -0.33 0.05 16 27 H 0.09 0.89 7.87 -51.93 -0.41 0.48 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.58 6.43 -51.93 -0.33 0.25 16 32 H 0.38 2.21 9.04 45.56 0.41 2.62 16 33 H 0.42 5.07 8.26 -40.82 -0.34 4.73 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.25 7.37 -51.93 -0.38 0.87 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.28 7.11 8.32 -40.82 -0.34 6.77 16 LS Contribution 337.32 15.07 5.08 5.08 Total: -1.00 -31.40 337.32 -7.85 -39.25 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -3.77 Total: 3.10 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -0.18 Total: -11.67 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.57 Total: -41.65 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.33 Total: -13.68 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 8.14 SS G_CDS: -4.20 Total: 3.94 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.40 -7.85 -39.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931387387.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.079 kcal (2) G-P(sol) polarization free energy of solvation -31.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds