Wall clock time and date at job start Tue Mar 31 2020 11:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.52999 * 109.47317 * 59.99960 * 3 2 1 5 5 O 1.42905 * 109.47264 * 300.00236 * 3 2 1 6 6 C 1.50697 * 109.47466 * 180.02562 * 3 2 1 7 7 O 1.21288 * 120.00017 * 335.00339 * 6 3 2 8 8 N 1.34777 * 120.00270 * 154.99801 * 6 3 2 9 9 C 1.38887 * 120.00136 * 180.02562 * 8 6 3 10 10 N 1.29947 * 125.36507 * 180.02562 * 9 8 6 11 11 C 1.31598 * 117.13827 * 180.02562 * 10 9 8 12 12 C 1.50698 * 122.22992 * 179.97438 * 11 10 9 13 13 C 1.34655 * 115.53741 * 0.02562 * 11 10 9 14 14 S 1.76199 * 125.92911 * 179.97438 * 13 11 10 15 15 C 1.76201 * 100.00200 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99465 * 0.02562 * 15 14 13 17 17 C 1.38425 * 120.00310 * 179.97438 * 15 14 13 18 18 N 1.31813 * 119.99752 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00170 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47254 * 59.99863 * 19 17 15 21 21 H 1.48501 * 109.47225 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47083 * 299.99935 * 19 17 15 23 23 S 1.76137 * 125.36603 * 359.70035 * 9 8 6 24 24 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 29 29 H 1.09002 * 109.46716 * 60.00091 * 4 3 2 30 30 H 1.09000 * 109.47486 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.47362 * 300.00732 * 4 3 2 32 32 H 0.96696 * 114.00036 * 299.99911 * 5 3 2 33 33 H 0.97000 * 119.99668 * 0.02562 * 8 6 3 34 34 H 1.09003 * 109.46785 * 90.02179 * 12 11 10 35 35 H 1.09000 * 109.47311 * 210.02460 * 12 11 10 36 36 H 1.09001 * 109.47193 * 330.02729 * 12 11 10 37 37 H 0.97000 * 119.99821 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2492 5 8 1.5636 2.1162 -1.1668 6 6 3.5469 1.4426 -0.0006 7 8 4.1536 0.4906 0.4428 8 7 4.2206 2.5005 -0.4941 9 6 5.6095 2.5003 -0.4951 10 7 6.3613 3.4610 -0.9428 11 6 7.6638 3.2899 -0.8648 12 6 8.6414 4.3292 -1.3499 13 6 8.0648 2.1239 -0.3237 14 16 9.7347 1.6131 -0.0890 15 6 9.4711 0.0336 0.6462 16 1 8.4655 -0.3230 0.8134 17 6 10.5528 -0.7505 1.0084 18 7 11.7801 -0.3154 0.8038 19 14 10.2733 -2.4252 1.7872 20 1 9.5049 -3.2844 0.8510 21 1 11.5835 -3.0598 2.0802 22 1 9.5092 -2.2626 3.0501 23 16 6.6293 1.2014 0.1175 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 1.6499 2.1392 30 1 1.8929 3.1916 1.2490 31 1 0.4400 2.1637 1.2493 32 1 1.8489 1.7127 -1.9979 33 1 3.7354 3.2620 -0.8484 34 1 8.8786 5.0132 -0.5351 35 1 9.5537 3.8391 -1.6901 36 1 8.1990 4.8869 -2.1753 37 1 12.5381 -0.8647 1.0580 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931387387.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:52 Heat of formation + Delta-G solvation = -81.786391 kcal Electronic energy + Delta-G solvation = -21660.965744 eV Core-core repulsion = 18268.915701 eV Total energy + Delta-G solvation = -3392.050043 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.070 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.90718 -40.29770 -38.51214 -36.26543 -34.82891 -34.15586 -32.13599 -30.53237 -28.81129 -27.73518 -26.82646 -25.11424 -22.92075 -21.98224 -21.01486 -20.03609 -19.21528 -18.68832 -17.50979 -17.11549 -17.08431 -16.88445 -16.61303 -16.03209 -15.66208 -15.33861 -14.95565 -14.41202 -14.27656 -13.87494 -13.54613 -13.48536 -13.41609 -13.29594 -13.07703 -13.05111 -12.90993 -12.85377 -12.72048 -12.18396 -12.15038 -12.05218 -11.87787 -11.53256 -11.35323 -11.04833 -10.71126 -10.50402 -10.48644 -9.55810 -8.58658 -8.39052 -6.31450 -0.28339 0.18350 0.79656 1.05840 1.25254 1.35081 1.38370 1.45636 1.61343 1.97983 2.13574 2.80717 3.00120 3.08014 3.22183 3.63000 3.74396 3.81780 4.38465 4.41627 4.46603 4.63344 4.66507 4.76354 4.83547 4.85523 4.94866 5.00415 5.02981 5.11070 5.26052 5.27843 5.44543 5.45217 5.82116 6.00494 6.46733 6.70790 6.83836 6.85816 8.48929 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.015704 B = 0.004107 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.569664 B = 6815.822182 C = 8384.511775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.149 3.851 4 C -0.144 4.144 5 O -0.542 6.542 6 C 0.478 3.522 7 O -0.532 6.532 8 N -0.596 5.596 9 C 0.222 3.778 10 N -0.482 5.482 11 C 0.036 3.964 12 C -0.062 4.062 13 C -0.280 4.280 14 S 0.102 5.898 15 C -0.578 4.578 16 H 0.081 0.919 17 C 0.037 3.963 18 N -0.896 5.896 19 Si 0.985 3.015 20 H -0.265 1.265 21 H -0.264 1.264 22 H -0.265 1.265 23 S 0.159 5.841 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.396 0.604 33 H 0.436 0.564 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.134 4.120 -2.485 21.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.176 4.176 3 C 0.104 3.896 4 C -0.201 4.201 5 O -0.350 6.350 6 C 0.265 3.735 7 O -0.407 6.407 8 N -0.248 5.248 9 C -0.151 4.151 10 N -0.204 5.204 11 C -0.106 4.106 12 C -0.122 4.122 13 C -0.516 4.516 14 S 0.350 5.650 15 C -0.726 4.726 16 H 0.098 0.902 17 C -0.171 4.171 18 N -0.530 5.530 19 Si 0.806 3.194 20 H -0.189 1.189 21 H -0.188 1.188 22 H -0.189 1.189 23 S 0.403 5.597 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.123 0.877 32 H 0.247 0.753 33 H 0.278 0.722 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.080 3.737 -1.683 20.494 hybrid contribution -0.089 -0.965 -0.164 0.983 sum -20.169 2.772 -1.847 20.442 Atomic orbital electron populations 1.21738 0.92309 1.02599 1.03332 1.22042 0.98614 0.93096 1.03825 1.21303 0.82723 0.95569 0.90003 1.21919 1.04411 1.00682 0.93119 1.86575 1.75914 1.56628 1.15855 1.22903 0.93295 0.80687 0.76661 1.90717 1.69845 1.34857 1.45289 1.42645 1.00132 1.22367 1.59658 1.24184 0.90174 0.95786 1.04968 1.66036 1.04236 1.28068 1.22012 1.19718 0.89367 0.95890 1.05585 1.20249 0.95116 0.95176 1.01624 1.28601 1.06682 1.03603 1.12693 1.82892 0.93200 1.18401 1.70515 1.23422 0.96595 1.04351 1.48266 0.90154 1.25877 0.93756 1.02791 0.94662 1.70085 0.98838 1.39532 1.44544 0.85191 0.78567 0.76681 0.78994 1.18924 1.18763 1.18948 1.85963 0.93241 1.19345 1.61127 0.91303 0.91765 0.91343 0.90829 0.91385 0.90470 0.91049 0.87674 0.75304 0.72211 0.90315 0.91305 0.89486 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.41 71.98 0.68 -0.90 16 2 C -0.14 -2.19 4.71 30.59 0.14 -2.05 16 3 C 0.15 2.49 1.00 -11.54 -0.01 2.48 16 4 C -0.14 -2.05 8.47 71.98 0.61 -1.44 16 5 O -0.54 -6.96 11.62 -148.98 -1.73 -8.69 16 6 C 0.48 12.46 6.65 87.66 0.58 13.05 16 7 O -0.53 -18.43 13.61 -3.05 -0.04 -18.47 16 8 N -0.60 -16.17 5.31 -309.58 -1.64 -17.81 16 9 C 0.22 8.23 8.40 179.15 1.50 9.73 16 10 N -0.48 -18.60 10.55 -184.87 -1.95 -20.56 16 11 C 0.04 1.49 6.73 41.77 0.28 1.77 16 12 C -0.06 -2.11 10.02 71.24 0.71 -1.39 16 13 C -0.28 -13.20 6.67 67.00 0.45 -12.76 16 14 S 0.10 5.35 20.74 -56.49 -1.17 4.18 16 15 C -0.58 -32.70 9.26 67.86 0.63 -32.07 16 16 H 0.08 4.52 5.97 -2.91 -0.02 4.51 16 17 C 0.04 2.00 5.49 84.74 0.46 2.46 16 18 N -0.90 -50.73 13.22 21.59 0.29 -50.44 16 19 Si 0.98 43.00 29.55 68.60 2.03 45.02 16 20 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 21 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 22 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 23 S 0.16 7.07 18.35 -56.49 -1.04 6.03 16 24 H 0.07 0.69 7.68 -2.39 -0.02 0.68 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.07 0.65 6.43 -2.39 -0.02 0.63 16 27 H 0.07 1.40 7.87 -2.39 -0.02 1.38 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.10 1.07 6.43 -2.39 -0.02 1.06 16 32 H 0.40 3.14 9.04 -74.06 -0.67 2.47 16 33 H 0.44 9.13 8.26 -92.71 -0.77 8.36 16 34 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.07 2.39 7.37 -2.39 -0.02 2.37 16 36 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.28 14.75 8.32 -92.71 -0.77 13.98 16 Total: -1.00 -69.33 337.32 0.48 -68.86 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -0.30 Total: 13.00 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: 6.04 Total: -21.11 kcal Atomic # 7 Polarization: -85.50 SS G_CDS: -3.31 Total: -88.81 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -1.77 Total: -27.17 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Atomic # 16 Polarization: 12.42 SS G_CDS: -2.21 Total: 10.21 kcal Total: -69.33 0.48 -68.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931387387.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.931 kcal (2) G-P(sol) polarization free energy of solvation -69.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds