Wall clock time and date at job start Tue Mar 31 2020 10:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48496 * 109.47443 * 59.99520 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 O 1.42903 * 109.46878 * 179.97438 * 13 11 10 15 15 C 1.36007 * 116.99577 * 179.97438 * 14 13 11 16 16 C 1.38635 * 120.04057 * 359.72960 * 15 14 13 17 17 C 1.38188 * 119.99391 * 179.76782 * 16 15 14 18 18 N 1.48019 * 119.96252 * 180.27400 * 17 16 15 19 19 O 1.21795 * 120.00462 * 0.22899 * 18 17 16 20 20 O 1.21797 * 119.99441 * 180.23040 * 18 17 16 21 21 C 1.38458 * 120.06786 * 0.50387 * 17 16 15 22 22 F 1.35097 * 119.96068 * 179.72500 * 21 17 16 23 23 C 1.38434 * 120.07473 * 359.74659 * 21 17 16 24 24 C 1.38337 * 120.00744 * 359.97438 * 23 21 17 25 25 F 1.35100 * 120.03274 * 179.97438 * 24 23 21 26 26 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 28 28 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 29 29 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 30 30 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 31 31 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 32 32 H 1.08001 * 119.99977 * 359.97438 * 16 15 14 33 33 H 1.08001 * 119.99647 * 179.97438 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0287 0.0033 14 8 2.0187 -7.2663 0.0032 15 6 2.7595 -8.4069 0.0042 16 6 4.1440 -8.3353 -0.0003 17 6 4.8957 -9.4947 0.0056 18 7 6.3739 -9.4174 0.0068 19 8 6.9270 -8.3323 0.0068 20 8 7.0371 -10.4390 0.0078 21 6 4.2677 -10.7287 0.0055 22 9 5.0048 -11.8609 0.0056 23 6 2.8854 -10.8036 0.0048 24 6 2.1298 -9.6448 0.0047 25 9 0.7807 -9.7173 0.0036 26 1 -0.4850 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8903 29 1 3.1568 -3.4354 0.0021 30 1 3.3612 -5.9713 -0.8858 31 1 3.3585 -5.9707 0.8942 32 1 4.6349 -7.3733 -0.0051 33 1 2.3969 -11.7668 0.0043 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118479294.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:43 Heat of formation + Delta-G solvation = -153.428167 kcal Electronic energy + Delta-G solvation = -25091.278487 eV Core-core repulsion = 20563.695471 eV Total energy + Delta-G solvation = -4527.583016 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -50.52279 -50.42343 -43.37115 -41.72386 -40.40641 -38.69791 -37.78837 -36.21234 -34.42895 -33.21877 -31.81317 -30.50743 -28.62610 -27.53963 -25.14333 -24.24928 -23.83103 -21.70058 -21.03333 -20.17186 -19.66511 -19.15617 -18.88723 -18.84758 -18.54451 -17.91897 -17.53818 -17.15992 -17.07935 -16.73561 -16.69821 -16.05412 -15.89587 -15.76729 -15.73932 -14.84690 -14.18737 -14.12854 -14.01627 -13.87042 -13.51490 -13.38507 -12.90485 -12.83689 -12.76984 -12.42965 -12.41543 -12.38267 -12.21744 -11.46610 -10.94946 -10.89256 -10.83369 -9.95082 -9.83319 -8.29910 -6.46202 -1.65112 -0.65105 -0.11982 0.01445 1.20593 1.45419 1.45951 1.54372 1.58935 1.59275 2.13217 2.34477 2.46748 2.60999 2.86219 3.00163 3.06112 3.56894 3.65537 3.91519 3.93685 3.98884 4.01235 4.05015 4.21802 4.74901 5.04867 5.08817 5.21585 5.41490 5.56709 5.69593 5.82357 6.29772 6.63806 6.77186 7.21437 7.36960 8.82348 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.020064 B = 0.002634 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.200355 B =10627.949337 C =12002.702626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.983 3.017 4 H -0.250 1.250 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.553 4.553 8 H 0.089 0.911 9 C 0.266 3.734 10 N -0.696 5.696 11 C 0.497 3.503 12 O -0.588 6.588 13 C 0.040 3.960 14 O -0.294 6.294 15 C 0.093 3.907 16 C -0.088 4.088 17 C -0.064 4.064 18 N 0.031 4.969 19 O -0.147 6.147 20 O -0.172 6.172 21 C 0.167 3.833 22 F -0.099 7.099 23 C -0.130 4.130 24 C 0.158 3.842 25 F -0.110 7.110 26 H 0.268 0.732 27 H -0.009 1.009 28 H -0.009 1.009 29 H 0.415 0.585 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.199 0.801 33 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.671 -21.931 0.004 24.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.806 3.194 4 H -0.174 1.174 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.591 4.591 8 H 0.107 0.893 9 C 0.143 3.857 10 N -0.348 5.348 11 C 0.283 3.717 12 O -0.469 6.469 13 C -0.037 4.037 14 O -0.206 6.206 15 C 0.045 3.955 16 C -0.108 4.108 17 C -0.149 4.149 18 N 0.549 4.451 19 O -0.366 6.366 20 O -0.383 6.383 21 C 0.146 3.854 22 F -0.077 7.077 23 C -0.150 4.150 24 C 0.138 3.862 25 F -0.088 7.088 26 H 0.077 0.923 27 H 0.009 0.991 28 H 0.009 0.991 29 H 0.252 0.748 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.216 0.784 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 9.743 -22.045 0.003 24.102 hybrid contribution 0.532 0.978 0.000 1.114 sum 10.275 -21.067 0.003 23.439 Atomic orbital electron populations 1.70135 1.08294 1.28527 1.50058 1.26043 0.95722 1.03895 0.93941 0.85132 0.79275 0.77442 0.77508 1.17352 1.20709 1.20720 1.21650 0.94518 0.90281 1.52679 0.89307 1.18615 0.88630 0.83946 0.94511 1.46000 1.11785 1.04615 1.72354 1.20727 0.89316 0.84827 0.76869 1.90724 1.19333 1.85304 1.51546 1.22929 0.93377 0.79212 1.08154 1.86318 1.34102 1.12116 1.88062 1.18792 0.89354 0.86785 1.00593 1.20925 0.90971 1.00027 0.98846 1.20965 0.79909 0.95629 1.18374 1.43442 1.03210 1.00642 0.97809 1.94561 1.73237 1.16140 1.52649 1.94630 1.64539 1.24988 1.54155 1.16823 0.89088 0.80229 0.99276 1.91700 1.76165 1.47293 1.92557 1.21133 0.89810 1.00695 1.03329 1.17022 0.78096 0.90864 1.00267 1.91649 1.27603 1.96814 1.92702 0.92276 0.99100 0.99107 0.74805 0.84266 0.84275 0.78398 0.76927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.53 13.29 21.45 0.28 -54.24 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.98 40.64 29.54 68.60 2.03 42.67 16 4 H -0.25 -9.43 7.11 99.48 0.71 -8.73 16 5 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.55 -28.28 9.28 25.60 0.24 -28.04 16 8 H 0.09 4.02 7.60 -2.91 -0.02 4.00 16 9 C 0.27 13.63 5.43 85.63 0.46 14.09 16 10 N -0.70 -25.67 5.55 -466.78 -2.59 -28.26 16 11 C 0.50 17.46 7.91 87.66 0.69 18.15 16 12 O -0.59 -27.88 16.50 16.01 0.26 -27.62 16 13 C 0.04 0.80 5.22 71.24 0.37 1.17 16 14 O -0.29 -6.98 9.54 -74.59 -0.71 -7.69 16 15 C 0.09 1.55 6.69 22.52 0.15 1.70 16 16 C -0.09 -1.17 8.54 22.35 0.19 -0.98 16 17 C -0.06 -1.01 6.86 36.42 0.25 -0.76 16 18 N 0.03 0.64 4.45 -46.36 -0.21 0.44 16 19 O -0.15 -3.14 18.45 18.89 0.35 -2.79 16 20 O -0.17 -4.06 17.41 18.89 0.33 -3.73 16 21 C 0.17 2.24 7.25 22.37 0.16 2.41 16 22 F -0.10 -1.55 15.47 44.97 0.70 -0.85 16 23 C -0.13 -1.25 10.00 22.34 0.22 -1.03 16 24 C 0.16 2.37 7.31 22.45 0.16 2.53 16 25 F -0.11 -2.13 17.11 44.97 0.77 -1.36 16 26 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 27 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 28 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 29 H 0.42 11.59 8.32 -92.71 -0.77 10.82 16 30 H 0.14 1.67 7.65 -2.39 -0.02 1.65 16 31 H 0.14 1.68 7.68 -2.39 -0.02 1.66 16 32 H 0.20 1.77 5.85 -2.91 -0.02 1.75 16 33 H 0.21 0.61 8.06 -2.91 -0.02 0.59 16 Total: -1.00 -75.68 318.30 5.02 -70.66 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: 0.44 Total: 2.87 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 3.37 Total: 9.91 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -2.51 Total: -82.07 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: 0.23 Total: -41.84 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 1.47 Total: -2.21 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Total: -75.68 5.02 -70.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118479294.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.766 kcal (2) G-P(sol) polarization free energy of solvation -75.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds