Wall clock time and date at job start Tue Mar 31 2020 10:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00188 * 2 1 4 4 H 1.48504 * 109.46857 * 269.99972 * 3 2 1 5 5 H 1.48502 * 109.46860 * 29.99588 * 3 2 1 6 6 H 1.48492 * 109.47183 * 149.99648 * 3 2 1 7 7 C 1.37880 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99349 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00267 * 179.97438 * 7 2 1 10 10 N 1.46906 * 109.47312 * 179.97438 * 9 7 2 11 11 C 1.46948 * 111.00157 * 293.80502 * 10 9 7 12 12 C 1.53047 * 109.36735 * 176.80674 * 11 10 9 13 13 N 1.46960 * 109.36306 * 58.40075 * 12 11 10 14 14 C 1.39055 * 111.00391 * 176.81187 * 13 12 11 15 15 N 1.32647 * 120.08765 * 59.94936 * 14 13 12 16 16 C 1.32343 * 119.91141 * 179.76893 * 15 14 13 17 17 Cl 1.73605 * 119.95037 * 180.27464 * 16 15 14 18 18 C 1.38311 * 120.09933 * 0.51625 * 16 15 14 19 19 N 1.32256 * 120.18867 * 359.73892 * 18 16 15 20 20 C 1.32038 * 120.07972 * 0.02562 * 19 18 16 21 21 Cl 1.73600 * 120.04667 * 179.97438 * 20 19 18 22 22 C 1.46961 * 110.88057 * 300.67974 * 13 12 11 23 23 C 1.46954 * 110.99975 * 169.99873 * 10 9 7 24 24 H 0.97002 * 119.99936 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47132 * 60.00456 * 9 7 2 26 26 H 1.09003 * 109.47519 * 300.00279 * 9 7 2 27 27 H 1.09005 * 109.49218 * 296.77646 * 11 10 9 28 28 H 1.09004 * 109.49203 * 56.83940 * 11 10 9 29 29 H 1.08998 * 109.49013 * 298.43671 * 12 11 10 30 30 H 1.09003 * 109.51022 * 178.37478 * 12 11 10 31 31 H 1.08001 * 119.90912 * 179.76614 * 18 16 15 32 32 H 1.08997 * 109.48778 * 299.35427 * 22 13 12 33 33 H 1.08991 * 109.50668 * 179.29379 * 22 13 12 34 34 H 1.08993 * 109.49077 * 303.15581 * 23 10 9 35 35 H 1.08998 * 109.48467 * 63.22662 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5791 0.0013 11 6 3.6552 -3.2588 1.2574 12 6 4.1114 -4.7180 1.1872 13 7 5.5608 -4.7644 0.9485 14 6 6.0244 -6.0754 0.9497 15 7 5.5495 -6.9495 0.0722 16 6 5.9965 -8.1952 0.0736 17 17 5.3808 -9.3382 -1.0790 18 6 6.9497 -8.5891 0.9951 19 7 7.4222 -7.7222 1.8750 20 6 6.9848 -6.4763 1.8772 21 17 7.6051 -5.3393 3.0330 22 6 5.9068 -4.0847 -0.3077 23 6 5.4505 -2.6254 -0.2375 24 1 -0.4850 0.8401 -0.0004 25 1 3.8752 -0.6797 0.8895 26 1 3.8746 -0.6808 -0.8905 27 1 4.1539 -2.7615 2.0894 28 1 2.5759 -3.2220 1.4055 29 1 3.5924 -5.2225 0.3722 30 1 3.8818 -5.2169 2.1287 31 1 7.3096 -9.6074 0.9958 32 1 5.4081 -4.5820 -1.1396 33 1 6.9859 -4.1215 -0.4561 34 1 5.6800 -2.1270 -1.1792 35 1 5.9696 -2.1209 0.5775 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165055422.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:51 Heat of formation + Delta-G solvation = 66.625196 kcal Electronic energy + Delta-G solvation = -21713.443020 eV Core-core repulsion = 18220.200830 eV Total energy + Delta-G solvation = -3493.242190 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 316.055 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.77786 -38.98235 -37.34630 -36.90739 -35.86402 -34.10459 -32.51044 -30.91980 -30.70798 -28.39257 -25.88871 -24.92525 -23.54114 -23.28627 -21.19764 -19.62398 -18.47519 -18.01309 -17.46067 -16.81394 -16.02491 -15.86711 -14.79249 -14.62634 -14.48208 -14.22801 -13.84178 -13.78560 -13.21633 -13.18294 -12.38859 -12.25345 -12.14504 -11.96724 -11.76611 -11.68732 -11.50212 -11.47994 -11.07237 -10.93404 -10.77389 -10.50920 -10.31187 -9.92688 -9.77645 -9.31673 -9.26332 -8.85214 -8.58827 -7.44713 -6.07412 -4.05246 -0.02243 0.39453 1.04027 1.55277 2.88048 3.11895 3.27191 3.34955 3.36533 3.67287 3.82035 4.12071 4.40046 4.54491 4.66702 5.00390 5.23697 5.25392 5.31913 5.44321 5.59624 5.75771 5.79669 5.92692 6.17066 6.36349 6.43215 6.52680 6.65538 6.81039 6.84349 6.96148 7.00976 7.54704 7.82895 7.96743 8.61798 9.00420 9.54070 11.05550 Molecular weight = 316.06amu Principal moments of inertia in cm(-1) A = 0.018938 B = 0.003482 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.156599 B = 8040.204218 C = 9003.731508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.874 3.126 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.511 4.511 8 H 0.081 0.919 9 C 0.163 3.837 10 N -0.528 5.528 11 C 0.069 3.931 12 C 0.062 3.938 13 N -0.478 5.478 14 C 0.298 3.702 15 N -0.442 5.442 16 C 0.136 3.864 17 Cl -0.006 7.006 18 C 0.078 3.922 19 N -0.413 5.413 20 C 0.148 3.852 21 Cl 0.019 6.981 22 C 0.065 3.935 23 C 0.056 3.944 24 H 0.264 0.736 25 H -0.009 1.009 26 H 0.025 0.975 27 H 0.034 0.966 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.188 0.812 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.399 -17.145 2.554 23.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.132 4.132 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.549 4.549 8 H 0.099 0.901 9 C 0.037 3.963 10 N -0.253 5.253 11 C -0.060 4.060 12 C -0.064 4.064 13 N -0.203 5.203 14 C 0.065 3.935 15 N -0.162 5.162 16 C -0.033 4.033 17 Cl 0.023 6.977 18 C -0.082 4.082 19 N -0.129 5.129 20 C -0.022 4.022 21 Cl 0.048 6.952 22 C -0.061 4.061 23 C -0.073 4.073 24 H 0.074 0.926 25 H 0.009 0.991 26 H 0.043 0.957 27 H 0.053 0.947 28 H 0.118 0.882 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.205 0.795 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 16.216 -16.981 2.556 23.619 hybrid contribution 0.359 0.911 -0.065 0.981 sum 16.575 -16.070 2.491 23.220 Atomic orbital electron populations 1.69890 1.06139 1.26873 1.50929 1.24892 0.94718 0.98843 0.94782 0.86874 0.80325 0.84042 0.78589 1.20160 1.21213 1.19228 1.21012 0.88656 0.94727 1.50523 0.90135 1.20161 0.97119 0.83745 0.95254 1.62116 1.10123 1.19461 1.33622 1.22037 1.02287 0.90644 0.90989 1.22402 0.83213 0.99458 1.01363 1.60601 1.17650 1.06006 1.36014 1.20587 0.92088 0.91260 0.89587 1.68223 1.24414 1.01636 1.21935 1.22931 0.95529 0.90754 0.94118 1.98450 1.86714 1.54880 1.57701 1.23511 0.93821 1.00701 0.90181 1.68037 1.23247 1.00923 1.20734 1.22713 0.94938 0.90720 0.93845 1.98448 1.85571 1.55402 1.55804 1.22284 1.00016 0.95293 0.88513 1.22112 0.90448 0.93655 1.01124 0.92637 0.99131 0.95681 0.94745 0.88248 0.91939 0.90762 0.79473 0.92051 0.90867 0.90235 0.94570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.96 55.43 0.77 -26.40 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 3 Si 0.87 21.14 27.47 -169.99 -4.67 16.47 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.51 -14.15 9.02 -34.44 -0.31 -14.46 16 8 H 0.08 2.43 7.38 -52.49 -0.39 2.04 16 9 C 0.16 3.84 3.79 -4.98 -0.02 3.82 16 10 N -0.53 -10.62 4.70 -235.91 -1.11 -11.73 16 11 C 0.07 1.27 5.43 -3.77 -0.02 1.25 16 12 C 0.06 0.95 5.43 -3.77 -0.02 0.93 16 13 N -0.48 -6.80 4.09 -172.86 -0.71 -7.50 16 14 C 0.30 3.94 5.33 -154.66 -0.82 3.11 16 15 N -0.44 -5.79 9.82 -9.33 -0.09 -5.88 16 16 C 0.14 1.43 7.28 -17.30 -0.13 1.31 16 17 Cl -0.01 -0.05 29.13 -51.86 -1.51 -1.56 16 18 C 0.08 0.70 10.99 -17.34 -0.19 0.51 16 19 N -0.41 -4.56 10.48 -9.98 -0.10 -4.67 16 20 C 0.15 1.80 7.31 -17.03 -0.12 1.68 16 21 Cl 0.02 0.22 28.62 -51.86 -1.48 -1.26 16 22 C 0.07 0.93 5.46 -3.76 -0.02 0.91 16 23 C 0.06 0.91 5.61 -3.77 -0.02 0.89 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H -0.01 -0.21 7.18 -51.93 -0.37 -0.59 16 26 H 0.03 0.59 7.46 -51.93 -0.39 0.20 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.10 2.03 6.79 -51.93 -0.35 1.68 16 29 H 0.06 1.04 7.94 -51.93 -0.41 0.63 16 30 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 31 H 0.19 0.96 8.06 -52.49 -0.42 0.53 16 32 H 0.06 0.94 8.01 -51.93 -0.42 0.53 16 33 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 34 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 321.88 15.07 4.85 4.85 Total: -1.00 -30.08 321.88 -9.85 -39.93 By element: Atomic # 1 Polarization: -0.03 SS G_CDS: -4.03 Total: -4.06 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -1.78 Total: 1.82 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -1.24 Total: -56.18 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.67 Total: 16.47 kcal Atomic # 17 Polarization: 0.17 SS G_CDS: -2.99 Total: -2.82 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.08 -9.85 -39.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165055422.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.555 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds