Wall clock time and date at job start Tue Mar 31 2020 10:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86807 * 120.00188 * 2 1 4 4 H 1.48504 * 109.46857 * 269.99972 * 3 2 1 5 5 H 1.48502 * 109.46860 * 29.99588 * 3 2 1 6 6 H 1.48492 * 109.47183 * 149.99648 * 3 2 1 7 7 C 1.37880 * 120.00271 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99349 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00267 * 179.97438 * 7 2 1 10 10 N 1.46906 * 109.47312 * 179.97438 * 9 7 2 11 11 C 1.46948 * 111.00157 * 293.80502 * 10 9 7 12 12 C 1.53047 * 109.36735 * 176.80674 * 11 10 9 13 13 N 1.46960 * 109.36306 * 58.40075 * 12 11 10 14 14 C 1.39055 * 111.00391 * 176.81187 * 13 12 11 15 15 N 1.32647 * 120.08765 * 59.94936 * 14 13 12 16 16 C 1.32343 * 119.91141 * 179.76893 * 15 14 13 17 17 Cl 1.73605 * 119.95037 * 180.27464 * 16 15 14 18 18 C 1.38311 * 120.09933 * 0.51625 * 16 15 14 19 19 N 1.32256 * 120.18867 * 359.73892 * 18 16 15 20 20 C 1.32038 * 120.07972 * 0.02562 * 19 18 16 21 21 Cl 1.73600 * 120.04667 * 179.97438 * 20 19 18 22 22 C 1.46961 * 110.88057 * 300.67974 * 13 12 11 23 23 C 1.46954 * 110.99975 * 169.99873 * 10 9 7 24 24 H 0.97002 * 119.99936 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47132 * 60.00456 * 9 7 2 26 26 H 1.09003 * 109.47519 * 300.00279 * 9 7 2 27 27 H 1.09005 * 109.49218 * 296.77646 * 11 10 9 28 28 H 1.09004 * 109.49203 * 56.83940 * 11 10 9 29 29 H 1.08998 * 109.49013 * 298.43671 * 12 11 10 30 30 H 1.09003 * 109.51022 * 178.37478 * 12 11 10 31 31 H 1.08001 * 119.90912 * 179.76614 * 18 16 15 32 32 H 1.08997 * 109.48778 * 299.35427 * 22 13 12 33 33 H 1.08991 * 109.50668 * 179.29379 * 22 13 12 34 34 H 1.08993 * 109.49077 * 303.15581 * 23 10 9 35 35 H 1.08998 * 109.48467 * 63.22662 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5791 0.0013 11 6 3.6552 -3.2588 1.2574 12 6 4.1114 -4.7180 1.1872 13 7 5.5608 -4.7644 0.9485 14 6 6.0244 -6.0754 0.9497 15 7 5.5495 -6.9495 0.0722 16 6 5.9965 -8.1952 0.0736 17 17 5.3808 -9.3382 -1.0790 18 6 6.9497 -8.5891 0.9951 19 7 7.4222 -7.7222 1.8750 20 6 6.9848 -6.4763 1.8772 21 17 7.6051 -5.3393 3.0330 22 6 5.9068 -4.0847 -0.3077 23 6 5.4505 -2.6254 -0.2375 24 1 -0.4850 0.8401 -0.0004 25 1 3.8752 -0.6797 0.8895 26 1 3.8746 -0.6808 -0.8905 27 1 4.1539 -2.7615 2.0894 28 1 2.5759 -3.2220 1.4055 29 1 3.5924 -5.2225 0.3722 30 1 3.8818 -5.2169 2.1287 31 1 7.3096 -9.6074 0.9958 32 1 5.4081 -4.5820 -1.1396 33 1 6.9859 -4.1215 -0.4561 34 1 5.6800 -2.1270 -1.1792 35 1 5.9696 -2.1209 0.5775 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165055422.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:51 Heat of formation + Delta-G solvation = 45.039873 kcal Electronic energy + Delta-G solvation = -21714.379030 eV Core-core repulsion = 18220.200830 eV Total energy + Delta-G solvation = -3494.178200 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 316.055 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.68556 -40.22954 -38.16563 -37.76605 -37.18227 -35.21354 -34.46027 -32.06670 -32.00828 -30.00594 -27.28234 -25.91357 -24.77156 -24.52160 -22.97502 -20.93661 -19.43971 -19.05800 -18.84121 -18.33723 -17.03105 -16.95124 -16.41590 -15.97383 -15.75176 -15.62534 -15.31185 -14.92378 -14.69532 -14.28607 -14.05807 -13.59142 -13.26989 -13.14803 -12.93400 -12.75646 -12.64287 -12.52650 -12.34559 -12.29293 -12.28096 -12.01371 -11.86280 -11.78679 -11.38530 -10.76334 -10.74403 -10.13755 -9.98251 -9.05013 -8.26450 -6.29944 -0.87971 -0.47952 0.22130 0.69925 1.37205 1.38404 1.48935 2.02252 2.10354 2.36208 2.81824 2.98358 3.06373 3.15765 3.26301 3.68466 3.85487 4.04404 4.17659 4.29770 4.38882 4.48493 4.54567 4.69513 4.81396 4.88775 4.94262 5.05850 5.13482 5.50704 5.53911 5.56420 5.75127 5.98550 6.12646 6.32099 6.63811 6.76287 7.33801 8.90039 Molecular weight = 316.06amu Principal moments of inertia in cm(-1) A = 0.018938 B = 0.003482 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.156599 B = 8040.204218 C = 9003.731508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.009 3.991 3 Si 0.947 3.053 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.250 1.250 7 C -0.516 4.516 8 H 0.038 0.962 9 C 0.174 3.826 10 N -0.545 5.545 11 C 0.075 3.925 12 C 0.078 3.922 13 N -0.475 5.475 14 C 0.280 3.720 15 N -0.464 5.464 16 C 0.130 3.870 17 Cl 0.007 6.993 18 C 0.102 3.898 19 N -0.419 5.419 20 C 0.146 3.854 21 Cl 0.020 6.980 22 C 0.074 3.926 23 C 0.057 3.943 24 H 0.266 0.734 25 H -0.009 1.009 26 H 0.032 0.968 27 H 0.036 0.964 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.230 0.770 32 H 0.048 0.952 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.177 -17.910 2.612 26.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.188 4.188 3 Si 0.770 3.230 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.173 1.173 7 C -0.554 4.554 8 H 0.056 0.944 9 C 0.047 3.953 10 N -0.270 5.270 11 C -0.054 4.054 12 C -0.049 4.049 13 N -0.200 5.200 14 C 0.047 3.953 15 N -0.184 5.184 16 C -0.039 4.039 17 Cl 0.036 6.964 18 C -0.059 4.059 19 N -0.136 5.136 20 C -0.023 4.023 21 Cl 0.048 6.952 22 C -0.053 4.053 23 C -0.072 4.072 24 H 0.075 0.925 25 H 0.009 0.991 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.246 0.754 32 H 0.066 0.934 33 H 0.116 0.884 34 H 0.108 0.892 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 19.024 -17.755 2.624 26.154 hybrid contribution -0.526 0.918 -0.121 1.065 sum 18.497 -16.837 2.503 25.138 Atomic orbital electron populations 1.70051 1.08169 1.28070 1.52632 1.25828 0.95550 1.03095 0.94361 0.85723 0.79389 0.78641 0.79222 1.19034 1.20969 1.17333 1.21246 0.91082 0.93214 1.49860 0.94408 1.19912 0.94193 0.85963 0.95275 1.62001 1.12993 1.17490 1.34558 1.21894 1.00434 0.92572 0.90489 1.22122 0.84393 0.96955 1.01445 1.60498 1.16195 1.07346 1.35919 1.20389 0.93355 0.90763 0.90774 1.68119 1.25131 1.02824 1.22359 1.23194 0.95807 0.90200 0.94731 1.98459 1.86622 1.54065 1.57298 1.24179 0.91878 1.01797 0.88086 1.68151 1.23481 1.00628 1.21339 1.22661 0.94782 0.91226 0.93589 1.98447 1.85488 1.55549 1.55694 1.22195 1.01192 0.93643 0.88222 1.22193 0.87747 0.95443 1.01779 0.92481 0.99142 0.95019 0.94555 0.91484 0.93604 0.89414 0.75355 0.93380 0.88390 0.89226 0.93942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.09 13.96 21.45 0.30 -58.79 16 2 C 0.01 0.52 5.47 84.66 0.46 0.98 16 3 Si 0.95 43.54 27.47 68.60 1.88 45.42 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 6 H -0.25 -10.67 6.54 99.48 0.65 -10.02 16 7 C -0.52 -29.49 9.02 25.60 0.23 -29.26 16 8 H 0.04 2.42 7.38 -2.91 -0.02 2.40 16 9 C 0.17 8.14 3.79 85.55 0.32 8.46 16 10 N -0.55 -22.04 4.70 -900.29 -4.23 -26.27 16 11 C 0.07 2.81 5.43 86.31 0.47 3.28 16 12 C 0.08 2.41 5.43 86.31 0.47 2.88 16 13 N -0.48 -13.02 4.09 -700.81 -2.87 -15.89 16 14 C 0.28 6.97 5.33 133.04 0.71 7.68 16 15 N -0.46 -11.52 9.82 -183.44 -1.80 -13.32 16 16 C 0.13 2.46 7.28 84.63 0.62 3.07 16 17 Cl 0.01 0.12 29.13 -2.72 -0.08 0.04 16 18 C 0.10 1.49 10.99 84.65 0.93 2.42 16 19 N -0.42 -8.14 10.48 -185.50 -1.94 -10.08 16 20 C 0.15 3.27 7.31 84.94 0.62 3.90 16 21 Cl 0.02 0.43 28.62 -2.72 -0.08 0.35 16 22 C 0.07 2.00 5.46 86.31 0.47 2.47 16 23 C 0.06 1.77 5.61 86.31 0.48 2.26 16 24 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 25 H -0.01 -0.43 7.18 -2.38 -0.02 -0.44 16 26 H 0.03 1.45 7.46 -2.39 -0.02 1.43 16 27 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.07 2.92 6.79 -2.38 -0.02 2.91 16 29 H 0.05 1.57 7.94 -2.39 -0.02 1.55 16 30 H 0.09 2.46 8.13 -2.39 -0.02 2.44 16 31 H 0.23 1.29 8.06 -2.91 -0.02 1.26 16 32 H 0.05 1.44 8.01 -2.39 -0.02 1.42 16 33 H 0.10 2.20 8.13 -2.39 -0.02 2.18 16 34 H 0.09 2.61 8.07 -2.39 -0.02 2.59 16 35 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -66.59 321.88 -1.97 -68.56 By element: Atomic # 1 Polarization: 0.78 SS G_CDS: 1.06 Total: 1.85 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 5.79 Total: 8.14 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -10.55 Total: -124.35 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 1.88 Total: 45.42 kcal Atomic # 17 Polarization: 0.54 SS G_CDS: -0.16 Total: 0.38 kcal Total: -66.59 -1.97 -68.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165055422.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.596 kcal (2) G-P(sol) polarization free energy of solvation -66.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds