Wall clock time and date at job start Tue Mar 31 2020 12:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00332 * 2 1 4 4 H 1.48504 * 109.47011 * 269.99974 * 3 2 1 5 5 H 1.48498 * 109.47139 * 29.99856 * 3 2 1 6 6 H 1.48500 * 109.47178 * 149.99996 * 3 2 1 7 7 C 1.38818 * 119.99543 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99619 * 0.02562 * 7 2 1 9 9 N 1.36931 * 119.99658 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99866 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47373 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47308 * 179.97438 * 11 10 9 13 13 N 1.46492 * 109.47164 * 180.02562 * 12 11 10 14 14 C 1.34779 * 120.00298 * 180.02562 * 13 12 11 15 15 O 1.21284 * 119.99880 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00305 * 179.97438 * 14 13 12 17 17 C 1.53006 * 109.47049 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.47049 * 179.97438 * 17 16 14 19 19 C 1.33347 * 125.18409 * 90.00037 * 18 17 16 20 20 C 1.38475 * 114.92849 * 180.02562 * 19 18 17 21 21 C 1.33503 * 114.88382 * 0.02562 * 20 19 18 22 22 Cl 1.73595 * 125.20870 * 179.97438 * 21 20 19 23 23 S 1.75877 * 125.19207 * 270.00312 * 18 17 16 24 24 H 0.97006 * 119.99980 * 0.02562 * 1 2 3 25 25 H 0.96994 * 120.00368 * 0.02562 * 9 7 2 26 26 H 1.09006 * 109.46855 * 59.99936 * 10 9 7 27 27 H 1.09002 * 109.47287 * 300.00401 * 10 9 7 28 28 H 1.09005 * 109.46481 * 60.00307 * 11 10 9 29 29 H 1.08992 * 109.47064 * 300.00114 * 11 10 9 30 30 H 1.08998 * 109.46938 * 60.00086 * 12 11 10 31 31 H 1.09002 * 109.47460 * 300.00697 * 12 11 10 32 32 H 0.97000 * 120.00538 * 0.02562 * 13 12 11 33 33 H 1.09005 * 109.46569 * 60.00552 * 16 14 13 34 34 H 1.08992 * 109.47113 * 300.00274 * 16 14 13 35 35 H 1.09006 * 109.46804 * 60.00286 * 17 16 14 36 36 H 1.08997 * 109.47086 * 300.00481 * 17 16 14 37 37 H 1.07996 * 122.54060 * 0.02599 * 19 18 17 38 38 H 1.08005 * 122.55896 * 179.73668 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2023 0.0005 8 1 1.4700 -2.1375 0.0005 9 7 3.3795 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 6 5.6162 -2.1916 -0.0013 12 6 6.3811 -3.5166 -0.0006 13 7 7.8214 -3.2490 -0.0013 14 6 8.6972 -4.2735 -0.0014 15 8 8.2929 -5.4169 -0.0014 16 6 10.1789 -3.9982 -0.0026 17 6 10.9438 -5.3233 -0.0031 18 6 12.4254 -5.0481 -0.0050 19 6 13.1822 -4.9074 1.0839 20 6 14.5215 -4.6580 0.8357 21 6 14.8512 -4.5958 -0.4564 22 17 16.4480 -4.2976 -1.0687 23 16 13.4203 -4.8633 -1.4435 24 1 -0.4850 0.8401 -0.0004 25 1 3.8645 -0.3623 -0.0004 26 1 3.8482 -3.0428 -0.8898 27 1 3.8489 -3.0425 0.8902 28 1 5.8802 -1.6197 0.8883 29 1 5.8789 -1.6205 -0.8917 30 1 6.1172 -4.0889 -0.8899 31 1 6.1183 -4.0875 0.8900 32 1 8.1449 -2.3346 -0.0016 33 1 10.4428 -3.4262 0.8870 34 1 10.4416 -3.4271 -0.8930 35 1 10.6797 -5.8949 -0.8929 36 1 10.6811 -5.8948 0.8871 37 1 12.7810 -4.9823 2.0838 38 1 15.2433 -4.5195 1.6271 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176011852.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:10 Heat of formation + Delta-G solvation = -13.056052 kcal Electronic energy + Delta-G solvation = -19862.658843 eV Core-core repulsion = 16471.545465 eV Total energy + Delta-G solvation = -3391.113379 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -39.96712 -38.59158 -37.15134 -36.27674 -34.53698 -34.01776 -32.06002 -30.30749 -29.01548 -26.10215 -24.81589 -23.14371 -22.10140 -21.35767 -20.34867 -19.93145 -18.11521 -17.60616 -16.94246 -16.35803 -16.10304 -15.97452 -15.13456 -14.65480 -14.33405 -14.19540 -13.97800 -13.71915 -13.59923 -13.15008 -12.98617 -12.82380 -12.70763 -12.41912 -12.05040 -11.78619 -11.74910 -11.34299 -11.23393 -11.15353 -11.07082 -10.87716 -10.74316 -10.20255 -10.02358 -9.61987 -9.18529 -9.06707 -9.00862 -8.93038 -7.27261 -5.79314 -3.15570 0.28582 0.60533 1.31847 1.74679 2.09087 2.45257 3.01298 3.33967 3.36298 3.42435 4.17637 4.46826 4.56079 4.59574 4.73600 4.80152 4.90108 4.97094 5.14264 5.15791 5.28801 5.45961 5.47178 5.51120 5.59985 5.63922 5.75893 5.86860 5.88595 5.91887 6.10042 6.31506 6.64987 6.68120 7.32097 7.96674 8.03833 8.39417 9.18089 9.90133 10.09522 11.39005 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.030162 B = 0.001666 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.093578 B =16802.671533 C =17362.545296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.247 4.247 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.160 3.840 11 C -0.142 4.142 12 C 0.122 3.878 13 N -0.728 5.728 14 C 0.511 3.489 15 O -0.542 6.542 16 C -0.137 4.137 17 C -0.035 4.035 18 C -0.164 4.164 19 C -0.133 4.133 20 C -0.115 4.115 21 C -0.155 4.155 22 Cl -0.017 7.017 23 S 0.152 5.848 24 H 0.260 0.740 25 H 0.360 0.640 26 H 0.030 0.970 27 H 0.030 0.970 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.401 0.599 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.150 0.850 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.958 -9.207 -0.020 36.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.192 4.192 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.377 4.377 8 H 0.109 0.891 9 N -0.402 5.402 10 C 0.032 3.968 11 C -0.180 4.180 12 C -0.002 4.002 13 N -0.380 5.380 14 C 0.296 3.704 15 O -0.419 6.419 16 C -0.178 4.178 17 C -0.075 4.075 18 C -0.282 4.282 19 C -0.163 4.163 20 C -0.147 4.147 21 C -0.299 4.299 22 Cl 0.012 6.988 23 S 0.415 5.585 24 H 0.070 0.930 25 H 0.193 0.807 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.235 0.765 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.167 0.833 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 34.295 -10.147 -1.640 35.802 hybrid contribution 1.208 1.893 1.472 2.685 sum 35.502 -8.254 -0.168 36.450 Atomic orbital electron populations 1.69706 1.05105 1.25854 1.57443 1.24692 0.95270 0.97257 1.01983 0.86515 0.79135 0.84903 0.77744 1.21060 1.21680 1.20417 1.19077 0.80580 0.94849 1.43168 0.89134 1.42678 1.04114 1.02134 1.91312 1.20502 0.87644 0.89536 0.99092 1.21995 0.97207 0.96223 1.02578 1.21350 0.78235 0.97892 1.02736 1.46096 1.07225 1.09410 1.75252 1.20559 0.88445 0.85236 0.76112 1.90729 1.80409 1.21300 1.49442 1.21698 0.91647 0.99310 1.05134 1.19922 0.85408 0.96705 1.05447 1.24668 1.00190 1.07865 0.95489 1.20018 0.92272 1.04057 0.99953 1.20214 0.97186 1.02309 0.94997 1.25261 0.92052 1.15190 0.97381 1.98375 1.18970 1.94416 1.87073 1.84556 0.96065 1.69947 1.07957 0.93021 0.80700 0.95169 0.95213 0.91354 0.91333 0.91141 0.91149 0.76512 0.88315 0.88608 0.89529 0.88550 0.83280 0.83384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.32 13.97 55.49 0.78 -28.54 16 2 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 3 Si 0.89 21.84 27.74 -169.99 -4.71 17.13 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 7 C -0.25 -7.02 10.47 -15.06 -0.16 -7.18 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 9 N -0.76 -17.78 5.41 -59.90 -0.32 -18.10 16 10 C 0.16 2.97 6.26 -4.04 -0.03 2.94 16 11 C -0.14 -1.91 5.44 -26.73 -0.15 -2.06 16 12 C 0.12 1.47 5.67 -4.05 -0.02 1.45 16 13 N -0.73 -7.03 5.56 -60.30 -0.33 -7.37 16 14 C 0.51 5.26 7.83 -10.98 -0.09 5.18 16 15 O -0.54 -7.78 15.98 5.55 0.09 -7.69 16 16 C -0.14 -0.89 5.68 -27.88 -0.16 -1.05 16 17 C -0.04 -0.25 5.00 -27.88 -0.14 -0.38 16 18 C -0.16 -1.09 5.76 -36.02 -0.21 -1.30 16 19 C -0.13 -0.81 10.05 -41.20 -0.41 -1.23 16 20 C -0.11 -0.73 10.13 -41.15 -0.42 -1.15 16 21 C -0.16 -1.12 7.10 29.08 0.21 -0.92 16 22 Cl -0.02 -0.12 29.29 -51.86 -1.52 -1.64 16 23 S 0.15 1.06 23.33 -107.50 -2.51 -1.45 16 24 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 25 H 0.36 8.14 5.53 -40.82 -0.23 7.91 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.40 2.81 8.47 -40.82 -0.35 2.46 16 33 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.10 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.15 0.70 8.06 -52.48 -0.42 0.28 16 LS Contribution 354.71 15.07 5.35 5.35 Total: -1.00 -33.77 354.71 -10.09 -43.86 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -5.23 Total: 4.14 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: -1.66 Total: -5.68 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: 0.12 Total: -54.01 kcal Atomic # 8 Polarization: -7.78 SS G_CDS: 0.09 Total: -7.69 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.13 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.51 Total: -1.45 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -1.52 Total: -1.64 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.77 -10.09 -43.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176011852.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.800 kcal (2) G-P(sol) polarization free energy of solvation -33.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds