Wall clock time and date at job start Tue Mar 31 2020 12:09:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31620 * 1
3 3 Si 1.86796 * 120.00332 * 2 1
4 4 H 1.48504 * 109.47011 * 269.99974 * 3 2 1
5 5 H 1.48498 * 109.47139 * 29.99856 * 3 2 1
6 6 H 1.48500 * 109.47178 * 149.99996 * 3 2 1
7 7 C 1.38818 * 119.99543 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99619 * 0.02562 * 7 2 1
9 9 N 1.36931 * 119.99658 * 179.97438 * 7 2 1
10 10 C 1.46501 * 119.99866 * 180.02562 * 9 7 2
11 11 C 1.53002 * 109.47373 * 179.97438 * 10 9 7
12 12 C 1.52997 * 109.47308 * 179.97438 * 11 10 9
13 13 N 1.46492 * 109.47164 * 180.02562 * 12 11 10
14 14 C 1.34779 * 120.00298 * 180.02562 * 13 12 11
15 15 O 1.21284 * 119.99880 * 0.02562 * 14 13 12
16 16 C 1.50699 * 120.00305 * 179.97438 * 14 13 12
17 17 C 1.53006 * 109.47049 * 180.02562 * 16 14 13
18 18 C 1.50699 * 109.47049 * 179.97438 * 17 16 14
19 19 C 1.33347 * 125.18409 * 90.00037 * 18 17 16
20 20 C 1.38475 * 114.92849 * 180.02562 * 19 18 17
21 21 C 1.33503 * 114.88382 * 0.02562 * 20 19 18
22 22 Cl 1.73595 * 125.20870 * 179.97438 * 21 20 19
23 23 S 1.75877 * 125.19207 * 270.00312 * 18 17 16
24 24 H 0.97006 * 119.99980 * 0.02562 * 1 2 3
25 25 H 0.96994 * 120.00368 * 0.02562 * 9 7 2
26 26 H 1.09006 * 109.46855 * 59.99936 * 10 9 7
27 27 H 1.09002 * 109.47287 * 300.00401 * 10 9 7
28 28 H 1.09005 * 109.46481 * 60.00307 * 11 10 9
29 29 H 1.08992 * 109.47064 * 300.00114 * 11 10 9
30 30 H 1.08998 * 109.46938 * 60.00086 * 12 11 10
31 31 H 1.09002 * 109.47460 * 300.00697 * 12 11 10
32 32 H 0.97000 * 120.00538 * 0.02562 * 13 12 11
33 33 H 1.09005 * 109.46569 * 60.00552 * 16 14 13
34 34 H 1.08992 * 109.47113 * 300.00274 * 16 14 13
35 35 H 1.09006 * 109.46804 * 60.00286 * 17 16 14
36 36 H 1.08997 * 109.47086 * 300.00481 * 17 16 14
37 37 H 1.07996 * 122.54060 * 0.02599 * 19 18 17
38 38 H 1.08005 * 122.55896 * 179.73668 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6176 0.0000
4 1 2.4978 2.0463 -1.4001
5 1 1.4478 2.6526 0.7000
6 1 3.5478 1.4400 0.7000
7 6 2.0102 -1.2023 0.0005
8 1 1.4700 -2.1375 0.0005
9 7 3.3795 -1.2023 0.0000
10 6 4.1120 -2.4710 0.0000
11 6 5.6162 -2.1916 -0.0013
12 6 6.3811 -3.5166 -0.0006
13 7 7.8214 -3.2490 -0.0013
14 6 8.6972 -4.2735 -0.0014
15 8 8.2929 -5.4169 -0.0014
16 6 10.1789 -3.9982 -0.0026
17 6 10.9438 -5.3233 -0.0031
18 6 12.4254 -5.0481 -0.0050
19 6 13.1822 -4.9074 1.0839
20 6 14.5215 -4.6580 0.8357
21 6 14.8512 -4.5958 -0.4564
22 17 16.4480 -4.2976 -1.0687
23 16 13.4203 -4.8633 -1.4435
24 1 -0.4850 0.8401 -0.0004
25 1 3.8645 -0.3623 -0.0004
26 1 3.8482 -3.0428 -0.8898
27 1 3.8489 -3.0425 0.8902
28 1 5.8802 -1.6197 0.8883
29 1 5.8789 -1.6205 -0.8917
30 1 6.1172 -4.0889 -0.8899
31 1 6.1183 -4.0875 0.8900
32 1 8.1449 -2.3346 -0.0016
33 1 10.4428 -3.4262 0.8870
34 1 10.4416 -3.4271 -0.8930
35 1 10.6797 -5.8949 -0.8929
36 1 10.6811 -5.8948 0.8871
37 1 12.7810 -4.9823 2.0838
38 1 15.2433 -4.5195 1.6271
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001176011852.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:09:10
Heat of formation + Delta-G solvation = -13.056052 kcal
Electronic energy + Delta-G solvation = -19862.658843 eV
Core-core repulsion = 16471.545465 eV
Total energy + Delta-G solvation = -3391.113379 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 316.075 amu
Computer time = 1.77 seconds
Orbital eigenvalues (eV)
-39.96712 -38.59158 -37.15134 -36.27674 -34.53698 -34.01776 -32.06002 -30.30749
-29.01548 -26.10215 -24.81589 -23.14371 -22.10140 -21.35767 -20.34867 -19.93145
-18.11521 -17.60616 -16.94246 -16.35803 -16.10304 -15.97452 -15.13456 -14.65480
-14.33405 -14.19540 -13.97800 -13.71915 -13.59923 -13.15008 -12.98617 -12.82380
-12.70763 -12.41912 -12.05040 -11.78619 -11.74910 -11.34299 -11.23393 -11.15353
-11.07082 -10.87716 -10.74316 -10.20255 -10.02358 -9.61987 -9.18529 -9.06707
-9.00862 -8.93038 -7.27261 -5.79314 -3.15570 0.28582 0.60533 1.31847
1.74679 2.09087 2.45257 3.01298 3.33967 3.36298 3.42435 4.17637
4.46826 4.56079 4.59574 4.73600 4.80152 4.90108 4.97094 5.14264
5.15791 5.28801 5.45961 5.47178 5.51120 5.59985 5.63922 5.75893
5.86860 5.88595 5.91887 6.10042 6.31506 6.64987 6.68120 7.32097
7.96674 8.03833 8.39417 9.18089 9.90133 10.09522 11.39005
Molecular weight = 316.08amu
Principal moments of inertia in cm(-1)
A = 0.030162 B = 0.001666 C = 0.001612
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 928.093578 B =16802.671533 C =17362.545296
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C 0.004 3.996
3 Si 0.887 3.113
4 H -0.284 1.284
5 H -0.290 1.290
6 H -0.278 1.278
7 C -0.247 4.247
8 H 0.091 0.909
9 N -0.757 5.757
10 C 0.160 3.840
11 C -0.142 4.142
12 C 0.122 3.878
13 N -0.728 5.728
14 C 0.511 3.489
15 O -0.542 6.542
16 C -0.137 4.137
17 C -0.035 4.035
18 C -0.164 4.164
19 C -0.133 4.133
20 C -0.115 4.115
21 C -0.155 4.155
22 Cl -0.017 7.017
23 S 0.152 5.848
24 H 0.260 0.740
25 H 0.360 0.640
26 H 0.030 0.970
27 H 0.030 0.970
28 H 0.068 0.932
29 H 0.068 0.932
30 H 0.070 0.930
31 H 0.070 0.930
32 H 0.401 0.599
33 H 0.099 0.901
34 H 0.096 0.904
35 H 0.086 0.914
36 H 0.096 0.904
37 H 0.150 0.850
38 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 34.958 -9.207 -0.020 36.150
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.581 5.581
2 C -0.192 4.192
3 Si 0.717 3.283
4 H -0.211 1.211
5 H -0.217 1.217
6 H -0.204 1.204
7 C -0.377 4.377
8 H 0.109 0.891
9 N -0.402 5.402
10 C 0.032 3.968
11 C -0.180 4.180
12 C -0.002 4.002
13 N -0.380 5.380
14 C 0.296 3.704
15 O -0.419 6.419
16 C -0.178 4.178
17 C -0.075 4.075
18 C -0.282 4.282
19 C -0.163 4.163
20 C -0.147 4.147
21 C -0.299 4.299
22 Cl 0.012 6.988
23 S 0.415 5.585
24 H 0.070 0.930
25 H 0.193 0.807
26 H 0.048 0.952
27 H 0.048 0.952
28 H 0.086 0.914
29 H 0.087 0.913
30 H 0.089 0.911
31 H 0.089 0.911
32 H 0.235 0.765
33 H 0.117 0.883
34 H 0.114 0.886
35 H 0.105 0.895
36 H 0.114 0.886
37 H 0.167 0.833
38 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges 34.295 -10.147 -1.640 35.802
hybrid contribution 1.208 1.893 1.472 2.685
sum 35.502 -8.254 -0.168 36.450
Atomic orbital electron populations
1.69706 1.05105 1.25854 1.57443 1.24692 0.95270 0.97257 1.01983
0.86515 0.79135 0.84903 0.77744 1.21060 1.21680 1.20417 1.19077
0.80580 0.94849 1.43168 0.89134 1.42678 1.04114 1.02134 1.91312
1.20502 0.87644 0.89536 0.99092 1.21995 0.97207 0.96223 1.02578
1.21350 0.78235 0.97892 1.02736 1.46096 1.07225 1.09410 1.75252
1.20559 0.88445 0.85236 0.76112 1.90729 1.80409 1.21300 1.49442
1.21698 0.91647 0.99310 1.05134 1.19922 0.85408 0.96705 1.05447
1.24668 1.00190 1.07865 0.95489 1.20018 0.92272 1.04057 0.99953
1.20214 0.97186 1.02309 0.94997 1.25261 0.92052 1.15190 0.97381
1.98375 1.18970 1.94416 1.87073 1.84556 0.96065 1.69947 1.07957
0.93021 0.80700 0.95169 0.95213 0.91354 0.91333 0.91141 0.91149
0.76512 0.88315 0.88608 0.89529 0.88550 0.83280 0.83384
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 40.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -29.32 13.97 55.49 0.78 -28.54 16
2 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16
3 Si 0.89 21.84 27.74 -169.99 -4.71 17.13 16
4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16
5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16
6 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16
7 C -0.25 -7.02 10.47 -15.06 -0.16 -7.18 16
8 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16
9 N -0.76 -17.78 5.41 -59.90 -0.32 -18.10 16
10 C 0.16 2.97 6.26 -4.04 -0.03 2.94 16
11 C -0.14 -1.91 5.44 -26.73 -0.15 -2.06 16
12 C 0.12 1.47 5.67 -4.05 -0.02 1.45 16
13 N -0.73 -7.03 5.56 -60.30 -0.33 -7.37 16
14 C 0.51 5.26 7.83 -10.98 -0.09 5.18 16
15 O -0.54 -7.78 15.98 5.55 0.09 -7.69 16
16 C -0.14 -0.89 5.68 -27.88 -0.16 -1.05 16
17 C -0.04 -0.25 5.00 -27.88 -0.14 -0.38 16
18 C -0.16 -1.09 5.76 -36.02 -0.21 -1.30 16
19 C -0.13 -0.81 10.05 -41.20 -0.41 -1.23 16
20 C -0.11 -0.73 10.13 -41.15 -0.42 -1.15 16
21 C -0.16 -1.12 7.10 29.08 0.21 -0.92 16
22 Cl -0.02 -0.12 29.29 -51.86 -1.52 -1.64 16
23 S 0.15 1.06 23.33 -107.50 -2.51 -1.45 16
24 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16
25 H 0.36 8.14 5.53 -40.82 -0.23 7.91 16
26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16
27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16
28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16
30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
32 H 0.40 2.81 8.47 -40.82 -0.35 2.46 16
33 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16
34 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16
35 H 0.09 0.68 8.10 -51.93 -0.42 0.26 16
36 H 0.10 0.70 8.10 -51.93 -0.42 0.28 16
37 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16
38 H 0.15 0.70 8.06 -52.48 -0.42 0.28 16
LS Contribution 354.71 15.07 5.35 5.35
Total: -1.00 -33.77 354.71 -10.09 -43.86
By element:
Atomic # 1 Polarization: 9.37 SS G_CDS: -5.23 Total: 4.14 kcal
Atomic # 6 Polarization: -4.01 SS G_CDS: -1.66 Total: -5.68 kcal
Atomic # 7 Polarization: -54.12 SS G_CDS: 0.12 Total: -54.01 kcal
Atomic # 8 Polarization: -7.78 SS G_CDS: 0.09 Total: -7.69 kcal
Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.13 kcal
Atomic # 16 Polarization: 1.06 SS G_CDS: -2.51 Total: -1.45 kcal
Atomic # 17 Polarization: -0.12 SS G_CDS: -1.52 Total: -1.64 kcal
Total LS contribution 5.35 Total: 5.35 kcal
Total: -33.77 -10.09 -43.86 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001176011852.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.800 kcal
(2) G-P(sol) polarization free energy of solvation -33.771 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.971 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.856 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.056 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.77 seconds