Wall clock time and date at job start Tue Mar 31 2020 12:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00332 * 2 1 4 4 H 1.48504 * 109.47011 * 269.99974 * 3 2 1 5 5 H 1.48498 * 109.47139 * 29.99856 * 3 2 1 6 6 H 1.48500 * 109.47178 * 149.99996 * 3 2 1 7 7 C 1.38818 * 119.99543 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99619 * 0.02562 * 7 2 1 9 9 N 1.36931 * 119.99658 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99866 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47373 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.47308 * 179.97438 * 11 10 9 13 13 N 1.46492 * 109.47164 * 180.02562 * 12 11 10 14 14 C 1.34779 * 120.00298 * 180.02562 * 13 12 11 15 15 O 1.21284 * 119.99880 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00305 * 179.97438 * 14 13 12 17 17 C 1.53006 * 109.47049 * 180.02562 * 16 14 13 18 18 C 1.50699 * 109.47049 * 179.97438 * 17 16 14 19 19 C 1.33347 * 125.18409 * 90.00037 * 18 17 16 20 20 C 1.38475 * 114.92849 * 180.02562 * 19 18 17 21 21 C 1.33503 * 114.88382 * 0.02562 * 20 19 18 22 22 Cl 1.73595 * 125.20870 * 179.97438 * 21 20 19 23 23 S 1.75877 * 125.19207 * 270.00312 * 18 17 16 24 24 H 0.97006 * 119.99980 * 0.02562 * 1 2 3 25 25 H 0.96994 * 120.00368 * 0.02562 * 9 7 2 26 26 H 1.09006 * 109.46855 * 59.99936 * 10 9 7 27 27 H 1.09002 * 109.47287 * 300.00401 * 10 9 7 28 28 H 1.09005 * 109.46481 * 60.00307 * 11 10 9 29 29 H 1.08992 * 109.47064 * 300.00114 * 11 10 9 30 30 H 1.08998 * 109.46938 * 60.00086 * 12 11 10 31 31 H 1.09002 * 109.47460 * 300.00697 * 12 11 10 32 32 H 0.97000 * 120.00538 * 0.02562 * 13 12 11 33 33 H 1.09005 * 109.46569 * 60.00552 * 16 14 13 34 34 H 1.08992 * 109.47113 * 300.00274 * 16 14 13 35 35 H 1.09006 * 109.46804 * 60.00286 * 17 16 14 36 36 H 1.08997 * 109.47086 * 300.00481 * 17 16 14 37 37 H 1.07996 * 122.54060 * 0.02599 * 19 18 17 38 38 H 1.08005 * 122.55896 * 179.73668 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2023 0.0005 8 1 1.4700 -2.1375 0.0005 9 7 3.3795 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 6 5.6162 -2.1916 -0.0013 12 6 6.3811 -3.5166 -0.0006 13 7 7.8214 -3.2490 -0.0013 14 6 8.6972 -4.2735 -0.0014 15 8 8.2929 -5.4169 -0.0014 16 6 10.1789 -3.9982 -0.0026 17 6 10.9438 -5.3233 -0.0031 18 6 12.4254 -5.0481 -0.0050 19 6 13.1822 -4.9074 1.0839 20 6 14.5215 -4.6580 0.8357 21 6 14.8512 -4.5958 -0.4564 22 17 16.4480 -4.2976 -1.0687 23 16 13.4203 -4.8633 -1.4435 24 1 -0.4850 0.8401 -0.0004 25 1 3.8645 -0.3623 -0.0004 26 1 3.8482 -3.0428 -0.8898 27 1 3.8489 -3.0425 0.8902 28 1 5.8802 -1.6197 0.8883 29 1 5.8789 -1.6205 -0.8917 30 1 6.1172 -4.0889 -0.8899 31 1 6.1183 -4.0875 0.8900 32 1 8.1449 -2.3346 -0.0016 33 1 10.4428 -3.4262 0.8870 34 1 10.4416 -3.4271 -0.8930 35 1 10.6797 -5.8949 -0.8929 36 1 10.6811 -5.8948 0.8871 37 1 12.7810 -4.9823 2.0838 38 1 15.2433 -4.5195 1.6271 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176011852.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:09 Heat of formation + Delta-G solvation = -35.378447 kcal Electronic energy + Delta-G solvation = -19863.626815 eV Core-core repulsion = 16471.545465 eV Total energy + Delta-G solvation = -3392.081350 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.075 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.79650 -39.09309 -37.72838 -37.57309 -35.95729 -34.61836 -33.85136 -31.81108 -29.70996 -27.26453 -25.77083 -24.14614 -23.33445 -22.66797 -21.25371 -20.40587 -19.64801 -18.63547 -17.72588 -17.13939 -17.03837 -16.65842 -16.44454 -16.05140 -15.65171 -14.99496 -14.83227 -14.81794 -14.60623 -14.25785 -13.87825 -13.77948 -13.69244 -13.40373 -13.18170 -12.87147 -12.53582 -12.50263 -12.28010 -12.25831 -12.07709 -12.00029 -11.85430 -11.80811 -11.65108 -10.97920 -10.92863 -10.07694 -9.56980 -9.51057 -9.31829 -8.03345 -5.38367 -0.20919 0.10835 0.83297 1.24412 1.38487 1.43944 1.51338 1.62406 1.66677 2.22097 2.49225 3.27883 3.54974 3.60829 3.91983 4.07152 4.10695 4.16267 4.25506 4.31716 4.36933 4.50323 4.67000 4.72436 4.73485 4.83369 4.91091 5.00084 5.10038 5.16412 5.26555 5.29643 5.40369 5.46535 5.74547 6.20160 6.58489 7.07242 7.28264 7.81851 8.02787 9.18117 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.030162 B = 0.001666 C = 0.001612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.093578 B =16802.671533 C =17362.545296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.067 4.067 3 Si 0.963 3.037 4 H -0.276 1.276 5 H -0.296 1.296 6 H -0.245 1.245 7 C -0.244 4.244 8 H 0.052 0.948 9 N -0.758 5.758 10 C 0.153 3.847 11 C -0.122 4.122 12 C 0.130 3.870 13 N -0.718 5.718 14 C 0.509 3.491 15 O -0.587 6.587 16 C -0.126 4.126 17 C -0.032 4.032 18 C -0.165 4.165 19 C -0.131 4.131 20 C -0.114 4.114 21 C -0.169 4.169 22 Cl -0.020 7.020 23 S 0.138 5.862 24 H 0.259 0.741 25 H 0.369 0.631 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.417 0.583 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.168 0.832 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.904 -7.685 0.555 38.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.258 4.258 3 Si 0.789 3.211 4 H -0.202 1.202 5 H -0.223 1.223 6 H -0.169 1.169 7 C -0.375 4.375 8 H 0.070 0.930 9 N -0.404 5.404 10 C 0.026 3.974 11 C -0.160 4.160 12 C 0.005 3.995 13 N -0.371 5.371 14 C 0.297 3.703 15 O -0.468 6.468 16 C -0.167 4.167 17 C -0.071 4.071 18 C -0.283 4.283 19 C -0.161 4.161 20 C -0.146 4.146 21 C -0.312 4.312 22 Cl 0.009 6.991 23 S 0.401 5.599 24 H 0.067 0.933 25 H 0.203 0.797 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.254 0.746 33 H 0.142 0.858 34 H 0.132 0.868 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.186 0.814 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 37.309 -8.625 -1.067 38.308 hybrid contribution 0.259 1.282 1.300 1.844 sum 37.568 -7.343 0.233 38.279 Atomic orbital electron populations 1.69909 1.07367 1.26875 1.59349 1.25633 0.96239 1.01732 1.02236 0.85296 0.78758 0.78780 0.78241 1.20208 1.22303 1.16933 1.19059 0.82914 0.93528 1.41991 0.92962 1.42642 1.02422 1.04232 1.91111 1.20676 0.90818 0.87522 0.98392 1.21760 0.93249 0.97082 1.03925 1.21062 0.79761 0.96823 1.01825 1.45947 1.05996 1.10404 1.74723 1.21215 0.89919 0.84438 0.74756 1.90717 1.81348 1.23200 1.51523 1.21695 0.88362 0.99438 1.07160 1.19834 0.85741 0.96891 1.04676 1.24613 0.99870 1.08383 0.95444 1.20250 0.92037 1.03136 1.00642 1.20464 0.97681 1.01386 0.95066 1.25397 0.92002 1.16035 0.97802 1.98372 1.19111 1.94477 1.87169 1.84591 0.96471 1.70296 1.08531 0.93265 0.79750 0.95800 0.95813 0.89958 0.89931 0.92260 0.92155 0.74560 0.85806 0.86801 0.90836 0.88963 0.81429 0.81853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.30 13.97 21.65 0.30 -63.00 16 2 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 3 Si 0.96 44.29 27.74 68.60 1.90 46.20 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.25 -9.85 6.52 99.48 0.65 -9.20 16 7 C -0.24 -14.03 10.47 84.04 0.88 -13.15 16 8 H 0.05 3.32 8.06 -2.91 -0.02 3.30 16 9 N -0.76 -34.59 5.41 -343.44 -1.86 -36.45 16 10 C 0.15 5.52 6.26 86.38 0.54 6.06 16 11 C -0.12 -2.96 5.44 30.59 0.17 -2.80 16 12 C 0.13 2.92 5.67 86.38 0.49 3.41 16 13 N -0.72 -11.94 5.56 -463.08 -2.57 -14.51 16 14 C 0.51 9.48 7.83 87.66 0.69 10.17 16 15 O -0.59 -16.52 15.98 -3.04 -0.05 -16.57 16 16 C -0.13 -1.29 5.68 29.85 0.17 -1.12 16 17 C -0.03 -0.39 5.00 29.85 0.15 -0.24 16 18 C -0.17 -1.88 5.76 24.58 0.14 -1.73 16 19 C -0.13 -1.27 10.05 21.22 0.21 -1.05 16 20 C -0.11 -1.20 10.13 21.25 0.22 -0.98 16 21 C -0.17 -2.19 7.10 66.75 0.47 -1.72 16 22 Cl -0.02 -0.26 29.29 -2.72 -0.08 -0.34 16 23 S 0.14 1.75 23.33 -56.49 -1.32 0.44 16 24 H 0.26 15.75 8.31 -92.70 -0.77 14.98 16 25 H 0.37 15.50 5.53 -92.71 -0.51 14.99 16 26 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.02 0.89 8.14 -2.39 -0.02 0.88 16 28 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.42 4.23 8.47 -92.71 -0.79 3.45 16 33 H 0.12 0.70 8.14 -2.38 -0.02 0.68 16 34 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 1.10 8.10 -2.38 -0.02 1.09 16 36 H 0.09 1.22 8.10 -2.39 -0.02 1.20 16 37 H 0.17 0.96 8.06 -2.91 -0.02 0.93 16 38 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -74.61 354.71 0.65 -73.96 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -0.27 Total: 16.90 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 4.59 Total: -6.63 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -4.13 Total: -113.96 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.05 Total: -16.57 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.90 Total: 46.20 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -1.32 Total: 0.44 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -0.08 Total: -0.34 kcal Total: -74.61 0.65 -73.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176011852.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.581 kcal (2) G-P(sol) polarization free energy of solvation -74.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds