Wall clock time and date at job start Tue Mar 31 2020 11:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86800 * 119.99974 * 2 1 4 4 H 1.48501 * 109.47182 * 274.97797 * 3 2 1 5 5 H 1.48501 * 109.46723 * 34.97533 * 3 2 1 6 6 H 1.48491 * 109.47142 * 154.97388 * 3 2 1 7 7 C 1.39938 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00039 * 164.58647 * 7 2 1 9 9 C 1.41413 * 119.99517 * 344.58401 * 7 2 1 10 10 C 1.40777 * 120.21120 * 335.37701 * 9 7 2 11 11 C 1.37637 * 119.88391 * 180.02562 * 10 9 7 12 12 C 1.38532 * 120.32474 * 0.02583 * 11 10 9 13 13 C 1.39254 * 120.42357 * 359.97438 * 12 11 10 14 14 N 1.39938 * 119.94170 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99903 * 144.38535 * 14 13 12 16 16 O 1.21291 * 119.99828 * 4.51905 * 15 14 13 17 17 C 1.50703 * 120.00239 * 184.52631 * 15 14 13 18 18 C 1.50695 * 109.47098 * 179.97438 * 17 15 14 19 19 C 1.38169 * 119.61242 * 124.72315 * 18 17 15 20 20 C 1.38782 * 119.14324 * 179.74919 * 19 18 17 21 21 Cl 1.73604 * 120.80067 * 180.28547 * 20 19 18 22 22 C 1.38811 * 118.39474 * 0.51431 * 20 19 18 23 23 C 1.38124 * 119.14599 * 359.75135 * 22 20 19 24 24 N 1.31878 * 119.61190 * 304.99489 * 18 17 15 25 25 C 1.38274 * 120.10642 * 0.27868 * 13 12 11 26 26 H 0.96999 * 120.00290 * 359.97438 * 1 2 3 27 27 H 1.08003 * 120.05736 * 0.04933 * 10 9 7 28 28 H 1.08005 * 119.83890 * 179.97438 * 11 10 9 29 29 H 1.07994 * 119.79027 * 179.97438 * 12 11 10 30 30 H 0.96996 * 120.00816 * 324.38445 * 14 13 12 31 31 H 1.09001 * 109.46554 * 299.99795 * 17 15 14 32 32 H 1.09000 * 109.46940 * 59.99852 * 17 15 14 33 33 H 1.07994 * 120.42623 * 0.02816 * 19 18 17 34 34 H 1.08003 * 120.43035 * 179.77315 * 22 20 19 35 35 H 1.08004 * 119.61359 * 179.97438 * 23 22 20 36 36 H 1.08007 * 120.16086 * 179.72695 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3846 2.1072 -1.3948 5 1 1.4962 2.6200 0.8026 6 1 3.5884 1.4121 0.5922 7 6 2.0080 -1.2118 -0.0005 8 1 3.0589 -1.2285 -0.2491 9 6 1.3391 -2.4146 0.3245 10 6 0.1802 -2.3871 1.1232 11 6 -0.4652 -3.5618 1.4359 12 6 0.0202 -4.7724 0.9688 13 6 1.1655 -4.8149 0.1778 14 7 1.6467 -6.0432 -0.2889 15 6 2.2080 -6.1264 -1.5115 16 8 2.3707 -5.1233 -2.1736 17 6 2.6335 -7.4658 -2.0557 18 6 3.2263 -7.2845 -3.4292 19 6 4.4984 -7.7559 -3.6914 20 6 5.0329 -7.5884 -4.9612 21 17 6.6240 -8.1704 -5.3398 22 6 4.2664 -6.9400 -5.9197 23 6 3.0047 -6.4912 -5.5814 24 7 2.5270 -6.6731 -4.3653 25 6 1.8308 -3.6459 -0.1427 26 1 -0.4850 0.8400 0.0004 27 1 -0.2020 -1.4458 1.4896 28 1 -1.3541 -3.5399 2.0490 29 1 -0.4928 -5.6889 1.2198 30 1 1.5764 -6.8348 0.2672 31 1 3.3782 -7.9071 -1.3934 32 1 1.7671 -8.1243 -2.1183 33 1 5.0676 -8.2522 -2.9195 34 1 4.6514 -6.7886 -6.9174 35 1 2.4019 -5.9854 -6.3212 36 1 2.7217 -3.6783 -0.7525 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177657661.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:34 Heat of formation + Delta-G solvation = 15.295365 kcal Electronic energy + Delta-G solvation = -22348.151804 eV Core-core repulsion = 18822.823884 eV Total energy + Delta-G solvation = -3525.327920 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.61100 -39.36101 -37.16682 -36.91555 -34.40164 -33.19282 -32.90325 -32.23503 -29.77484 -29.21307 -27.35391 -25.25499 -23.81138 -23.01972 -21.33622 -20.75838 -19.56685 -17.78081 -17.22208 -16.98686 -16.45699 -15.87105 -15.43573 -15.13360 -14.75722 -14.48330 -14.33014 -13.95540 -13.65324 -13.32739 -13.10281 -12.82647 -12.46317 -12.32659 -12.19918 -11.97515 -11.56555 -11.28838 -11.24267 -11.05859 -10.64500 -10.45779 -10.10426 -9.70548 -9.66845 -9.60117 -9.43453 -9.28269 -9.04267 -8.74324 -7.39823 -6.86672 -6.66595 -4.29439 0.82206 0.89786 1.66648 2.68237 2.88480 3.11489 3.16502 3.23080 3.33747 3.44258 3.80654 3.99868 4.04427 4.43734 4.63813 4.68768 4.81046 4.99224 5.12085 5.23297 5.34279 5.48821 5.64550 5.69311 5.78002 6.28945 6.34564 6.44210 6.82133 7.07632 7.10146 7.13589 7.31152 7.61385 7.78266 7.85728 8.02785 8.14096 8.23464 8.31946 8.68489 8.80010 8.99025 9.03571 10.26726 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.014960 B = 0.003096 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.172560 B = 9040.853768 C =10255.410017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.075 3.925 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.456 4.456 8 H 0.076 0.924 9 C 0.117 3.883 10 C -0.173 4.173 11 C -0.094 4.094 12 C -0.262 4.262 13 C 0.151 3.849 14 N -0.671 5.671 15 C 0.507 3.493 16 O -0.495 6.495 17 C -0.093 4.093 18 C 0.164 3.836 19 C -0.161 4.161 20 C 0.008 3.992 21 Cl -0.058 7.058 22 C -0.171 4.171 23 C 0.123 3.877 24 N -0.447 5.447 25 C -0.209 4.209 26 H 0.279 0.721 27 H 0.121 0.879 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.397 0.603 31 H 0.109 0.891 32 H 0.115 0.885 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.166 0.834 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.228 -15.865 -6.876 18.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.485 4.485 8 H 0.094 0.906 9 C 0.114 3.886 10 C -0.193 4.193 11 C -0.113 4.113 12 C -0.283 4.283 13 C 0.060 3.940 14 N -0.315 5.315 15 C 0.292 3.708 16 O -0.368 6.368 17 C -0.134 4.134 18 C 0.025 3.975 19 C -0.181 4.181 20 C -0.027 4.027 21 Cl -0.029 7.029 22 C -0.191 4.191 23 C -0.035 4.035 24 N -0.156 5.156 25 C -0.231 4.231 26 H 0.090 0.910 27 H 0.139 0.861 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.231 0.769 31 H 0.127 0.873 32 H 0.133 0.867 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.183 0.817 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.465 -14.736 -7.250 17.650 hybrid contribution 1.228 -0.018 -0.091 1.231 sum 7.693 -14.754 -7.341 18.186 Atomic orbital electron populations 1.69827 1.07509 1.28965 1.35803 1.25898 0.94754 1.01251 0.92344 0.86299 0.80677 0.80724 0.79016 1.19606 1.20071 1.18475 1.19563 0.97257 0.90870 1.40849 0.90573 1.17520 0.91270 0.91723 0.88095 1.21405 0.99231 0.96884 1.01791 1.20466 0.98338 0.92744 0.99719 1.20049 0.99583 0.96925 1.11792 1.17416 0.94385 0.83887 0.98361 1.43384 1.60426 1.10978 1.16748 1.20121 0.78819 0.90444 0.81442 1.90804 1.51714 1.36735 1.57521 1.20644 1.03107 0.97622 0.91981 1.20577 0.89951 0.92297 0.94664 1.21852 0.96609 1.03416 0.96271 1.21204 0.87732 0.98706 0.95072 1.98390 1.23088 1.87037 1.94419 1.22120 0.95928 1.00520 1.00566 1.22846 0.92496 0.94936 0.93236 1.67504 1.37018 1.10384 1.00693 1.21044 1.03496 0.91342 1.07201 0.91007 0.86092 0.89119 0.89355 0.76897 0.87250 0.86731 0.83739 0.83797 0.81697 0.87301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.29 10.82 55.55 0.60 -20.68 16 2 C 0.07 1.95 5.19 -17.34 -0.09 1.86 16 3 Si 0.91 19.42 29.59 -169.99 -5.03 14.39 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.46 -12.74 9.06 -37.74 -0.34 -13.09 16 8 H 0.08 2.08 7.89 -52.49 -0.41 1.67 16 9 C 0.12 3.27 5.58 -106.85 -0.60 2.67 16 10 C -0.17 -4.62 8.69 -38.84 -0.34 -4.96 16 11 C -0.09 -2.22 10.02 -39.69 -0.40 -2.61 16 12 C -0.26 -5.81 9.97 -39.10 -0.39 -6.20 16 13 C 0.15 3.44 6.28 -83.77 -0.53 2.91 16 14 N -0.67 -11.66 5.33 -9.91 -0.05 -11.71 16 15 C 0.51 8.91 7.60 -10.98 -0.08 8.82 16 16 O -0.50 -11.34 12.82 5.55 0.07 -11.27 16 17 C -0.09 -1.07 6.10 -29.04 -0.18 -1.25 16 18 C 0.16 2.17 5.76 -82.60 -0.48 1.69 16 19 C -0.16 -1.78 9.54 -39.41 -0.38 -2.15 16 20 C 0.01 0.08 6.37 -39.17 -0.25 -0.17 16 21 Cl -0.06 -0.55 29.02 -51.86 -1.50 -2.05 16 22 C -0.17 -1.77 9.94 -39.41 -0.39 -2.16 16 23 C 0.12 1.49 11.18 -17.56 -0.20 1.29 16 24 N -0.45 -6.80 9.22 -9.49 -0.09 -6.88 16 25 C -0.21 -5.51 8.43 -38.69 -0.33 -5.83 16 26 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 27 H 0.12 3.31 6.07 -52.48 -0.32 2.99 16 28 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 29 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 30 H 0.40 5.06 8.82 -40.82 -0.36 4.70 16 31 H 0.11 0.85 7.87 -51.93 -0.41 0.44 16 32 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.14 1.21 7.95 -52.49 -0.42 0.80 16 34 H 0.14 1.11 8.06 -52.48 -0.42 0.68 16 35 H 0.17 1.58 8.06 -52.48 -0.42 1.16 16 36 H 0.11 2.97 6.28 -52.48 -0.33 2.64 16 LS Contribution 331.37 15.07 4.99 4.99 Total: -1.00 -33.81 331.37 -9.46 -43.27 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -3.50 Total: 9.12 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -4.96 Total: -19.18 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.46 Total: -39.28 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.07 Total: -11.27 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.81 -9.46 -43.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177657661.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.561 kcal (2) G-P(sol) polarization free energy of solvation -33.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds