Wall clock time and date at job start Tue Mar 31 2020 11:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39919 * 120.08633 * 295.18455 * 3 2 1 5 5 C 1.37721 * 119.92212 * 179.76594 * 4 3 2 6 6 F 1.35096 * 119.95124 * 180.27486 * 5 4 3 7 7 C 1.39468 * 120.09787 * 0.51883 * 5 4 3 8 8 N 1.39308 * 119.91098 * 179.75958 * 7 5 4 9 9 C 1.39776 * 120.00107 * 174.97406 * 8 7 5 10 10 C 1.38785 * 120.10641 * 254.85623 * 9 8 7 11 11 C 1.38182 * 119.98792 * 180.02562 * 10 9 8 12 12 C 1.38356 * 120.20729 * 0.02562 * 11 10 9 13 13 C 1.38175 * 120.21514 * 359.67666 * 12 11 10 14 14 C 1.38719 * 120.00660 * 0.60112 * 13 12 11 15 15 O 1.35777 * 120.10602 * 179.69709 * 14 13 12 16 16 C 1.34803 * 116.99798 * 5.65496 * 15 14 13 17 17 H 1.08002 * 120.00176 * 354.92025 * 16 15 14 18 18 C 1.38625 * 120.00074 * 174.65386 * 16 15 14 19 19 N 1.31579 * 120.00276 * 0.27115 * 18 16 15 20 20 Si 1.86798 * 120.00103 * 180.26925 * 18 16 15 21 21 H 1.48507 * 109.46848 * 60.00251 * 20 18 16 22 22 H 1.48506 * 109.47313 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47465 * 300.00308 * 20 18 16 24 24 C 1.39002 * 120.17640 * 359.48479 * 7 5 4 25 25 C 1.38005 * 120.07148 * 0.25021 * 24 7 5 26 26 F 1.35102 * 120.04777 * 180.02562 * 25 24 7 27 27 H 1.08000 * 120.04172 * 0.05341 * 4 3 2 28 28 H 0.97003 * 120.00486 * 354.97319 * 8 7 5 29 29 H 1.07991 * 120.00627 * 0.04261 * 10 9 8 30 30 H 1.07998 * 119.89103 * 179.97438 * 11 10 9 31 31 H 1.08004 * 119.89096 * 179.97438 * 12 11 10 32 32 H 1.07996 * 119.99651 * 180.32374 * 13 12 11 33 33 H 0.96996 * 120.00665 * 179.97438 * 19 18 16 34 34 H 1.07994 * 119.96464 * 180.27915 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2697 -0.5142 1.0956 5 6 4.6469 -0.5164 1.0899 6 9 5.3249 -1.0184 2.1451 7 6 5.3426 0.0037 -0.0012 8 7 6.7357 0.0042 -0.0006 9 6 7.4349 0.4271 -1.1346 10 6 8.0553 -0.5029 -1.9571 11 6 8.7464 -0.0820 -3.0772 12 6 8.8229 1.2653 -3.3824 13 6 8.2033 2.1980 -2.5729 14 6 7.5121 1.7859 -1.4430 15 8 6.9076 2.7012 -0.6428 16 6 6.9161 3.9820 -1.0630 17 1 7.4595 4.2538 -1.9559 18 6 6.2227 4.9493 -0.3522 19 7 5.5607 4.6183 0.7357 20 14 6.2283 6.7228 -0.9388 21 1 5.6468 6.7946 -2.3034 22 1 5.4192 7.5536 -0.0110 23 1 7.6236 7.2303 -0.9680 24 6 4.6497 0.5163 -1.0918 25 6 3.2697 0.5170 -1.0960 26 9 2.5968 1.0149 -2.1564 27 1 2.7320 -0.9138 1.9427 28 1 7.2206 -0.2890 0.7867 29 1 7.9977 -1.5553 -1.7218 30 1 9.2289 -0.8070 -3.7159 31 1 9.3647 1.5887 -4.2590 32 1 8.2609 3.2484 -2.8174 33 1 5.0759 5.2952 1.2333 34 1 5.1919 0.9140 -1.9368 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212600367.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:15 Heat of formation + Delta-G solvation = -24.535312 kcal Electronic energy + Delta-G solvation = -25444.723700 eV Core-core repulsion = 21365.871912 eV Total energy + Delta-G solvation = -4078.851788 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.076 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.79855 -48.66438 -39.88806 -38.65216 -36.87257 -36.30804 -34.90084 -32.44465 -30.66357 -30.12074 -29.26885 -27.96442 -25.53411 -23.76463 -22.82113 -21.79269 -21.17915 -19.15797 -18.19026 -18.04775 -17.86478 -16.81951 -16.31466 -15.80293 -15.65521 -15.17708 -14.88571 -14.84364 -14.73783 -14.20009 -14.03746 -13.83557 -13.45836 -13.44422 -13.35555 -13.12688 -12.93555 -12.58623 -12.09288 -12.06137 -11.84080 -11.47993 -11.40708 -11.09056 -11.05796 -11.00178 -10.60829 -10.13000 -9.61501 -8.99725 -8.63777 -8.41329 -7.58263 -7.28025 -6.60405 -4.20068 0.89656 1.21734 1.79101 2.11139 2.79424 3.03584 3.04535 3.06568 3.09411 3.45690 3.82394 3.84231 3.96843 4.25563 4.29496 4.40222 4.79318 4.89180 4.99404 5.23692 5.44480 5.49444 5.58157 5.73719 5.83695 5.93895 6.01843 6.06050 6.26523 6.33225 6.44080 6.74415 6.83209 6.88283 7.09199 7.15471 7.33792 7.60581 7.65214 7.78021 7.89136 8.83833 9.46547 10.55035 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.009429 B = 0.006075 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.770641 B = 4608.123519 C = 6095.134611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.273 3.727 3 C -0.117 4.117 4 C -0.030 4.030 5 C 0.007 3.993 6 F -0.136 7.136 7 C 0.271 3.729 8 N -0.649 5.649 9 C 0.030 3.970 10 C -0.064 4.064 11 C -0.211 4.211 12 C -0.063 4.063 13 C -0.230 4.230 14 C 0.149 3.851 15 O -0.156 6.156 16 C -0.398 4.398 17 H 0.093 0.907 18 C 0.046 3.954 19 N -0.848 5.848 20 Si 0.938 3.062 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.269 1.269 24 C -0.187 4.187 25 C 0.194 3.806 26 F -0.126 7.126 27 H 0.150 0.850 28 H 0.410 0.590 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.132 0.868 33 H 0.273 0.727 34 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.952 -8.839 -2.580 9.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.042 4.042 3 C -0.124 4.124 4 C -0.052 4.052 5 C -0.017 4.017 6 F -0.115 7.115 7 C 0.161 3.839 8 N -0.269 5.269 9 C -0.063 4.063 10 C -0.084 4.084 11 C -0.230 4.230 12 C -0.082 4.082 13 C -0.249 4.249 14 C 0.092 3.908 15 O -0.057 6.057 16 C -0.474 4.474 17 H 0.110 0.890 18 C -0.160 4.160 19 N -0.481 5.481 20 Si 0.763 3.237 21 H -0.193 1.193 22 H -0.202 1.202 23 H -0.194 1.194 24 C -0.210 4.210 25 C 0.171 3.829 26 F -0.104 7.104 27 H 0.167 0.833 28 H 0.247 0.753 29 H 0.135 0.865 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.150 0.850 33 H 0.083 0.917 34 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.036 -8.652 -2.300 9.013 hybrid contribution 0.802 1.060 -0.016 1.329 sum 1.837 -7.593 -2.317 8.148 Atomic orbital electron populations 1.81187 1.11808 1.10058 1.07672 1.25186 0.92087 0.93161 0.93731 1.15282 0.84819 1.14785 0.97494 1.20507 0.91473 0.96292 0.96951 1.16654 0.89336 1.09044 0.86670 1.91458 1.79823 1.85715 1.54539 1.17682 0.84724 0.89939 0.91517 1.41454 1.01239 1.68392 1.15783 1.16570 1.06883 0.89214 0.93679 1.20823 0.96438 0.97753 0.93393 1.20499 1.07116 0.95597 0.99815 1.20885 0.96586 0.92956 0.97759 1.21133 1.05204 1.00701 0.97899 1.19643 0.91995 0.89104 0.90062 1.84011 1.64294 1.16654 1.40736 1.21294 1.33436 0.80486 1.12186 0.88963 1.25276 0.95197 0.99991 0.95554 1.70018 1.28452 1.34957 1.14661 0.85818 0.78846 0.80198 0.78884 1.19323 1.20153 1.19426 1.20329 0.91450 1.07771 1.01466 1.17166 0.89173 0.93555 0.82974 1.91532 1.80203 1.84541 1.54102 0.83265 0.75265 0.86486 0.87025 0.87065 0.85035 0.91693 0.82918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.50 18.54 41.84 0.78 -6.72 16 2 C 0.27 4.37 14.97 -22.47 -0.34 4.03 16 3 C -0.12 -1.78 5.75 -106.68 -0.61 -2.39 16 4 C -0.03 -0.41 9.72 -39.14 -0.38 -0.79 16 5 C 0.01 0.10 7.30 -39.31 -0.29 -0.18 16 6 F -0.14 -1.97 16.62 2.25 0.04 -1.93 16 7 C 0.27 4.52 6.52 -83.72 -0.55 3.98 16 8 N -0.65 -10.70 5.15 -8.23 -0.04 -10.74 16 9 C 0.03 0.52 4.85 -83.55 -0.41 0.12 16 10 C -0.06 -0.96 9.97 -39.40 -0.39 -1.36 16 11 C -0.21 -3.03 10.04 -39.56 -0.40 -3.43 16 12 C -0.06 -0.98 10.04 -39.56 -0.40 -1.38 16 13 C -0.23 -4.30 9.16 -39.43 -0.36 -4.66 16 14 C 0.15 3.08 5.50 -38.92 -0.21 2.87 16 15 O -0.16 -3.86 9.22 0.04 0.00 -3.86 16 16 C -0.40 -10.05 9.49 30.88 0.29 -9.76 16 17 H 0.09 2.15 5.21 -52.49 -0.27 1.88 16 18 C 0.05 1.18 5.49 -17.52 -0.10 1.08 16 19 N -0.85 -23.09 13.67 55.48 0.76 -22.33 16 20 Si 0.94 19.38 29.55 -169.99 -5.02 14.35 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 24 C -0.19 -3.27 8.92 -39.38 -0.35 -3.62 16 25 C 0.19 3.26 7.27 -39.00 -0.28 2.97 16 26 F -0.13 -2.19 16.80 2.25 0.04 -2.15 16 27 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 28 H 0.41 6.06 8.30 -40.82 -0.34 5.72 16 29 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 30 H 0.11 1.32 8.06 -52.49 -0.42 0.89 16 31 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 32 H 0.13 2.49 5.64 -52.49 -0.30 2.20 16 33 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.15 2.88 6.28 -52.49 -0.33 2.55 16 LS Contribution 321.83 15.07 4.85 4.85 Total: -1.00 -27.81 321.83 -5.44 -33.25 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -2.06 Total: 7.80 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -4.77 Total: -12.52 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: 1.49 Total: -39.80 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: 0.00 Total: -3.86 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.08 Total: -4.08 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.81 -5.44 -33.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212600367.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.712 kcal (2) G-P(sol) polarization free energy of solvation -27.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds