Wall clock time and date at job start Tue Mar 31 2020 11:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39919 * 120.08633 * 295.18455 * 3 2 1 5 5 C 1.37721 * 119.92212 * 179.76594 * 4 3 2 6 6 F 1.35096 * 119.95124 * 180.27486 * 5 4 3 7 7 C 1.39468 * 120.09787 * 0.51883 * 5 4 3 8 8 N 1.39308 * 119.91098 * 179.75958 * 7 5 4 9 9 C 1.39776 * 120.00107 * 174.97406 * 8 7 5 10 10 C 1.38785 * 120.10641 * 254.85623 * 9 8 7 11 11 C 1.38182 * 119.98792 * 180.02562 * 10 9 8 12 12 C 1.38356 * 120.20729 * 0.02562 * 11 10 9 13 13 C 1.38175 * 120.21514 * 359.67666 * 12 11 10 14 14 C 1.38719 * 120.00660 * 0.60112 * 13 12 11 15 15 O 1.35777 * 120.10602 * 179.69709 * 14 13 12 16 16 C 1.34803 * 116.99798 * 5.65496 * 15 14 13 17 17 H 1.08002 * 120.00176 * 354.92025 * 16 15 14 18 18 C 1.38625 * 120.00074 * 174.65386 * 16 15 14 19 19 N 1.31579 * 120.00276 * 0.27115 * 18 16 15 20 20 Si 1.86798 * 120.00103 * 180.26925 * 18 16 15 21 21 H 1.48507 * 109.46848 * 60.00251 * 20 18 16 22 22 H 1.48506 * 109.47313 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47465 * 300.00308 * 20 18 16 24 24 C 1.39002 * 120.17640 * 359.48479 * 7 5 4 25 25 C 1.38005 * 120.07148 * 0.25021 * 24 7 5 26 26 F 1.35102 * 120.04777 * 180.02562 * 25 24 7 27 27 H 1.08000 * 120.04172 * 0.05341 * 4 3 2 28 28 H 0.97003 * 120.00486 * 354.97319 * 8 7 5 29 29 H 1.07991 * 120.00627 * 0.04261 * 10 9 8 30 30 H 1.07998 * 119.89103 * 179.97438 * 11 10 9 31 31 H 1.08004 * 119.89096 * 179.97438 * 12 11 10 32 32 H 1.07996 * 119.99651 * 180.32374 * 13 12 11 33 33 H 0.96996 * 120.00665 * 179.97438 * 19 18 16 34 34 H 1.07994 * 119.96464 * 180.27915 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2697 -0.5142 1.0956 5 6 4.6469 -0.5164 1.0899 6 9 5.3249 -1.0184 2.1451 7 6 5.3426 0.0037 -0.0012 8 7 6.7357 0.0042 -0.0006 9 6 7.4349 0.4271 -1.1346 10 6 8.0553 -0.5029 -1.9571 11 6 8.7464 -0.0820 -3.0772 12 6 8.8229 1.2653 -3.3824 13 6 8.2033 2.1980 -2.5729 14 6 7.5121 1.7859 -1.4430 15 8 6.9076 2.7012 -0.6428 16 6 6.9161 3.9820 -1.0630 17 1 7.4595 4.2538 -1.9559 18 6 6.2227 4.9493 -0.3522 19 7 5.5607 4.6183 0.7357 20 14 6.2283 6.7228 -0.9388 21 1 5.6468 6.7946 -2.3034 22 1 5.4192 7.5536 -0.0110 23 1 7.6236 7.2303 -0.9680 24 6 4.6497 0.5163 -1.0918 25 6 3.2697 0.5170 -1.0960 26 9 2.5968 1.0149 -2.1564 27 1 2.7320 -0.9138 1.9427 28 1 7.2206 -0.2890 0.7867 29 1 7.9977 -1.5553 -1.7218 30 1 9.2289 -0.8070 -3.7159 31 1 9.3647 1.5887 -4.2590 32 1 8.2609 3.2484 -2.8174 33 1 5.0759 5.2952 1.2333 34 1 5.1919 0.9140 -1.9368 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212600367.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:14 Heat of formation + Delta-G solvation = -38.904706 kcal Electronic energy + Delta-G solvation = -25445.346804 eV Core-core repulsion = 21365.871912 eV Total energy + Delta-G solvation = -4079.474892 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.076 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.17073 -49.85730 -41.28678 -40.00851 -38.34930 -37.66421 -36.20899 -34.23451 -31.97175 -31.40631 -30.65580 -29.33136 -27.29319 -25.04781 -24.13389 -23.24598 -22.51889 -20.43967 -19.81329 -19.37913 -19.27917 -18.26049 -17.59146 -17.10736 -17.04090 -16.50656 -16.34228 -16.27225 -16.16265 -15.64119 -15.40130 -15.12348 -14.84557 -14.77577 -14.75494 -14.50550 -14.43909 -13.90132 -13.57644 -13.38029 -13.33812 -12.96935 -12.72125 -12.50807 -12.44319 -12.36731 -12.19678 -11.50746 -11.18246 -10.76836 -9.91934 -9.73554 -9.03288 -8.62647 -8.42615 -6.08908 -0.39020 -0.03125 0.45073 0.73628 1.36307 1.44769 1.48874 1.49483 1.72993 2.14517 2.20248 2.55011 2.68336 2.83644 2.99404 3.13321 3.18191 3.46535 3.57409 3.96251 4.20100 4.28657 4.31675 4.47625 4.54832 4.67689 4.68966 4.80007 4.93011 4.99531 5.10845 5.16449 5.47402 5.58597 5.61858 5.77677 5.97448 6.03928 6.28740 6.35288 6.59139 7.02331 7.79197 8.76623 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.009429 B = 0.006075 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.770641 B = 4608.123519 C = 6095.134611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.288 3.712 3 C -0.113 4.113 4 C -0.010 4.010 5 C 0.010 3.990 6 F -0.130 7.130 7 C 0.262 3.738 8 N -0.650 5.650 9 C 0.032 3.968 10 C -0.062 4.062 11 C -0.184 4.184 12 C -0.063 4.063 13 C -0.245 4.245 14 C 0.117 3.883 15 O -0.202 6.202 16 C -0.410 4.410 17 H 0.099 0.901 18 C -0.011 4.011 19 N -0.904 5.904 20 Si 1.002 2.998 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.258 1.258 24 C -0.200 4.200 25 C 0.185 3.815 26 F -0.134 7.134 27 H 0.187 0.813 28 H 0.417 0.583 29 H 0.151 0.849 30 H 0.154 0.846 31 H 0.145 0.855 32 H 0.120 0.880 33 H 0.269 0.731 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.151 -10.875 -3.568 12.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.129 5.129 2 C -0.026 4.026 3 C -0.120 4.120 4 C -0.031 4.031 5 C -0.014 4.014 6 F -0.109 7.109 7 C 0.152 3.848 8 N -0.271 5.271 9 C -0.061 4.061 10 C -0.082 4.082 11 C -0.203 4.203 12 C -0.081 4.081 13 C -0.265 4.265 14 C 0.064 3.936 15 O -0.107 6.107 16 C -0.487 4.487 17 H 0.116 0.884 18 C -0.210 4.210 19 N -0.541 5.541 20 Si 0.822 3.178 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.183 1.183 24 C -0.224 4.224 25 C 0.162 3.838 26 F -0.113 7.113 27 H 0.204 0.796 28 H 0.256 0.744 29 H 0.168 0.832 30 H 0.172 0.828 31 H 0.162 0.838 32 H 0.137 0.863 33 H 0.078 0.922 34 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.276 -10.733 -3.328 11.466 hybrid contribution 0.612 1.356 0.112 1.492 sum 2.889 -9.378 -3.216 10.326 Atomic orbital electron populations 1.81205 1.12418 1.10885 1.08421 1.25150 0.91969 0.92462 0.93034 1.15262 0.84434 1.14816 0.97466 1.20826 0.90922 0.94341 0.97057 1.16646 0.89733 1.08779 0.86234 1.91478 1.79797 1.85542 1.54090 1.17818 0.84886 0.90208 0.91903 1.41467 1.01297 1.68375 1.15985 1.16915 1.06419 0.88606 0.94150 1.21248 0.95242 0.98889 0.92790 1.21078 1.04433 0.95814 0.99019 1.21275 0.95772 0.93023 0.98028 1.21279 1.05895 1.01107 0.98242 1.20226 0.92482 0.89966 0.90945 1.83987 1.67250 1.16765 1.42695 1.21647 1.33274 0.81428 1.12316 0.88359 1.26274 0.95058 1.03952 0.95750 1.70151 1.31226 1.35938 1.16759 0.84873 0.79215 0.75295 0.78369 1.18659 1.20216 1.18253 1.20177 0.91766 1.08853 1.01579 1.17290 0.89098 0.94064 0.83337 1.91504 1.80287 1.84809 1.54656 0.79615 0.74434 0.83185 0.82802 0.83752 0.86250 0.92165 0.84918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -15.38 18.54 19.00 0.35 -15.03 16 2 C 0.29 8.95 14.97 88.33 1.32 10.27 16 3 C -0.11 -3.33 5.75 -21.20 -0.12 -3.45 16 4 C -0.01 -0.25 9.72 22.55 0.22 -0.03 16 5 C 0.01 0.29 7.30 22.44 0.16 0.45 16 6 F -0.13 -3.51 16.62 44.97 0.75 -2.77 16 7 C 0.26 8.69 6.52 38.43 0.25 8.94 16 8 N -0.65 -21.17 5.15 -179.95 -0.93 -22.09 16 9 C 0.03 1.11 4.85 38.32 0.19 1.30 16 10 C -0.06 -1.66 9.97 22.39 0.22 -1.43 16 11 C -0.18 -4.47 10.04 22.28 0.22 -4.25 16 12 C -0.06 -1.76 10.04 22.28 0.22 -1.54 16 13 C -0.25 -9.16 9.16 22.37 0.20 -8.96 16 14 C 0.12 4.94 5.50 22.70 0.12 5.06 16 15 O -0.20 -10.53 9.22 -22.76 -0.21 -10.74 16 16 C -0.41 -21.75 9.49 67.91 0.64 -21.11 16 17 H 0.10 4.81 5.21 -2.91 -0.02 4.80 16 18 C -0.01 -0.58 5.49 84.82 0.47 -0.11 16 19 N -0.90 -51.97 13.67 21.61 0.30 -51.67 16 20 Si 1.00 41.19 29.55 68.60 2.03 43.21 16 21 H -0.26 -10.30 7.11 99.48 0.71 -9.60 16 22 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 24 C -0.20 -7.18 8.92 22.40 0.20 -6.98 16 25 C 0.19 6.29 7.27 22.64 0.16 6.45 16 26 F -0.13 -4.81 16.80 44.97 0.76 -4.06 16 27 H 0.19 3.31 8.06 -2.91 -0.02 3.28 16 28 H 0.42 12.04 8.30 -92.71 -0.77 11.27 16 29 H 0.15 3.05 8.06 -2.92 -0.02 3.03 16 30 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 31 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 32 H 0.12 4.66 5.64 -2.91 -0.02 4.64 16 33 H 0.27 14.56 8.31 -92.71 -0.77 13.79 16 34 H 0.13 5.26 6.28 -2.91 -0.02 5.24 16 Total: -1.00 -64.22 321.83 7.97 -56.25 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.44 Total: 22.29 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 4.49 Total: -15.39 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -0.28 Total: -88.79 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: -0.21 Total: -10.74 kcal Atomic # 9 Polarization: -8.33 SS G_CDS: 1.50 Total: -6.82 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.21 kcal Total: -64.22 7.97 -56.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212600367.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.345 kcal (2) G-P(sol) polarization free energy of solvation -64.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds