Wall clock time and date at job start Tue Mar 31 2020 11:56:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13599 * 1
3 3 C 1.43199 * 179.97438 * 2 1
4 4 C 1.40113 * 120.10998 * 270.92190 * 3 2 1
5 5 F 1.35097 * 120.05841 * 0.02562 * 4 3 2
6 6 C 1.37894 * 119.87925 * 179.77193 * 4 3 2
7 7 C 1.39149 * 120.11635 * 0.51063 * 6 4 3
8 8 N 1.39187 * 119.88848 * 179.72076 * 7 6 4
9 9 C 1.39797 * 119.99928 * 355.29794 * 8 7 6
10 10 C 1.38774 * 120.10786 * 254.90548 * 9 8 7
11 11 C 1.38185 * 119.99245 * 179.97438 * 10 9 8
12 12 C 1.38349 * 120.20547 * 0.02562 * 11 10 9
13 13 C 1.38173 * 120.21888 * 0.02562 * 12 11 10
14 14 C 1.38730 * 120.00135 * 359.74462 * 13 12 11
15 15 O 1.35783 * 120.10069 * 180.27702 * 14 13 12
16 16 C 1.34797 * 117.00209 * 5.65239 * 15 14 13
17 17 H 1.07993 * 120.00031 * 354.95056 * 16 15 14
18 18 C 1.38630 * 119.99959 * 174.95519 * 16 15 14
19 19 N 1.31580 * 120.00022 * 179.97438 * 18 16 15
20 20 Si 1.86797 * 120.00128 * 359.97438 * 18 16 15
21 21 H 1.48493 * 109.47266 * 90.00185 * 20 18 16
22 22 H 1.48500 * 109.47482 * 210.00437 * 20 18 16
23 23 H 1.48503 * 109.47063 * 330.00050 * 20 18 16
24 24 C 1.39161 * 120.22979 * 359.74343 * 7 6 4
25 25 C 1.37894 * 120.10962 * 0.02562 * 24 7 6
26 26 F 1.35102 * 120.05530 * 180.02562 * 25 24 7
27 27 H 1.08003 * 119.94049 * 180.25444 * 6 4 3
28 28 H 0.97000 * 120.00659 * 175.29565 * 8 7 6
29 29 H 1.08006 * 120.00544 * 359.97438 * 10 9 8
30 30 H 1.08001 * 119.89034 * 179.97438 * 11 10 9
31 31 H 1.07999 * 119.89186 * 179.97438 * 12 11 10
32 32 H 1.07993 * 119.99876 * 180.02562 * 13 12 11
33 33 H 0.96996 * 120.00046 * 179.97438 * 19 18 16
34 34 H 1.08000 * 119.94273 * 179.97438 * 24 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.2709 -0.0185 1.2119
5 9 2.5988 -0.0382 2.3837
6 6 4.6498 -0.0226 1.2063
7 6 5.3432 0.0031 0.0001
8 7 6.7350 0.0047 0.0001
9 6 7.4339 0.0799 1.2085
10 6 8.0513 1.2650 1.5830
11 6 8.7411 1.3369 2.7782
12 6 8.8192 0.2299 3.6044
13 6 8.2086 -0.9547 3.2395
14 6 7.5098 -1.0353 2.0437
15 8 6.9043 -2.1967 1.6859
16 6 6.9195 -3.1982 2.5880
17 1 7.4683 -3.0849 3.5112
18 6 6.2309 -4.3735 2.3307
19 7 6.2462 -5.3512 3.2111
20 14 5.2812 -4.5691 0.7341
21 1 6.1695 -5.1548 -0.3017
22 1 4.1198 -5.4676 0.9558
23 1 4.7991 -3.2403 0.2789
24 6 4.6498 0.0275 -1.2062
25 6 3.2709 0.0270 -1.2117
26 9 2.5988 0.0503 -2.3835
27 1 5.1926 -0.0415 2.1398
28 1 7.2202 -0.0464 -0.8383
29 1 7.9927 2.1311 0.9403
30 1 9.2213 2.2599 3.0678
31 1 9.3600 0.2916 4.5372
32 1 8.2716 -1.8164 3.8873
33 1 5.7640 -6.1734 3.0312
34 1 5.1926 0.0478 -2.1397
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001212603520.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:56:25
Heat of formation + Delta-G solvation = -22.813619 kcal
Electronic energy + Delta-G solvation = -25471.422484 eV
Core-core repulsion = 21392.645354 eV
Total energy + Delta-G solvation = -4078.777130 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 316.076 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-49.15829 -48.99024 -40.15574 -38.82111 -37.02182 -36.46486 -34.93534 -32.56529
-30.87022 -30.34482 -29.51954 -28.24132 -25.47745 -23.66931 -23.18498 -21.79723
-21.27523 -19.21674 -18.39757 -18.25389 -17.99146 -17.11589 -16.27031 -16.14669
-15.80118 -15.33594 -15.32171 -15.13753 -14.90516 -14.61380 -13.96144 -13.94897
-13.70096 -13.50270 -13.45581 -13.07971 -12.79835 -12.55844 -12.42883 -12.36296
-12.09726 -11.72905 -11.56856 -11.28929 -11.13317 -10.95635 -10.36814 -10.11089
-9.64647 -9.05563 -8.84603 -8.54128 -7.80869 -7.53172 -6.59480 -4.27026
0.71730 1.03681 1.66172 1.97363 2.69508 2.93547 3.12619 3.15999
3.19833 3.29470 3.66503 3.85323 3.88987 4.09111 4.14875 4.30214
4.51332 4.87348 4.91670 5.00983 5.12151 5.32797 5.49705 5.65886
5.70631 5.78396 5.82646 5.91245 6.09892 6.16182 6.30266 6.57688
6.72379 6.80280 7.01921 7.16971 7.38283 7.50072 7.55001 7.70500
7.84671 8.74429 9.30693 10.46980
Molecular weight = 316.08amu
Principal moments of inertia in cm(-1)
A = 0.010607 B = 0.006181 C = 0.004792
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2639.120741 B = 4528.668877 C = 5842.149189
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.422 5.422
2 C 0.268 3.732
3 C -0.175 4.175
4 C 0.223 3.777
5 F -0.119 7.119
6 C -0.219 4.219
7 C 0.314 3.686
8 N -0.650 5.650
9 C 0.030 3.970
10 C -0.066 4.066
11 C -0.202 4.202
12 C -0.064 4.064
13 C -0.217 4.217
14 C 0.158 3.842
15 O -0.197 6.197
16 C -0.393 4.393
17 H 0.109 0.891
18 C 0.071 3.929
19 N -0.869 5.869
20 Si 0.895 3.105
21 H -0.273 1.273
22 H -0.280 1.280
23 H -0.252 1.252
24 C -0.248 4.248
25 C 0.220 3.780
26 F -0.123 7.123
27 H 0.155 0.845
28 H 0.410 0.590
29 H 0.119 0.881
30 H 0.114 0.886
31 H 0.114 0.886
32 H 0.138 0.862
33 H 0.282 0.718
34 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.029 11.988 -6.016 13.750
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.098 5.098
2 C -0.046 4.046
3 C -0.183 4.183
4 C 0.200 3.800
5 F -0.097 7.097
6 C -0.242 4.242
7 C 0.204 3.796
8 N -0.269 5.269
9 C -0.064 4.064
10 C -0.086 4.086
11 C -0.222 4.222
12 C -0.083 4.083
13 C -0.237 4.237
14 C 0.103 3.897
15 O -0.100 6.100
16 C -0.468 4.468
17 H 0.126 0.874
18 C -0.134 4.134
19 N -0.505 5.505
20 Si 0.720 3.280
21 H -0.198 1.198
22 H -0.206 1.206
23 H -0.175 1.175
24 C -0.272 4.272
25 C 0.197 3.803
26 F -0.101 7.101
27 H 0.172 0.828
28 H 0.247 0.753
29 H 0.137 0.863
30 H 0.132 0.868
31 H 0.132 0.868
32 H 0.156 0.844
33 H 0.093 0.907
34 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges 1.132 11.656 -5.997 13.157
hybrid contribution 0.128 -0.525 -0.702 0.886
sum 1.260 11.131 -6.699 13.053
Atomic orbital electron populations
1.81170 1.11638 1.10543 1.06449 1.24987 0.91952 0.93336 0.94371
1.15540 0.85353 1.24811 0.92613 1.16807 0.88992 0.94886 0.79312
1.91562 1.80316 1.92775 1.45027 1.20600 0.91478 1.12390 0.99727
1.17322 0.84265 0.86186 0.91856 1.41585 1.01360 1.76409 1.07572
1.16587 1.06914 0.92633 0.90228 1.20817 0.96569 0.94919 0.96282
1.20577 1.06392 0.98967 0.96233 1.20947 0.96598 0.92436 0.98289
1.21264 1.03910 0.99771 0.98709 1.19368 0.92026 0.85681 0.92655
1.83603 1.66104 1.18381 1.41924 1.20759 1.33538 0.92038 1.00499
0.87400 1.24442 0.96242 0.94113 0.98628 1.69634 1.40770 1.05481
1.34583 0.86317 0.79608 0.79761 0.82330 1.19825 1.20587 1.17543
1.20295 0.91631 1.16719 0.98505 1.16678 0.88885 0.95627 0.79143
1.91542 1.80494 1.93016 1.45078 0.82785 0.75278 0.86281 0.86810
0.86760 0.84400 0.90741 0.83262
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.42 -7.55 18.54 41.84 0.78 -6.77 16
2 C 0.27 4.45 14.62 -22.47 -0.33 4.12 16
3 C -0.18 -2.68 5.76 -106.57 -0.61 -3.29 16
4 C 0.22 3.55 7.27 -39.00 -0.28 3.27 16
5 F -0.12 -1.98 16.81 2.25 0.04 -1.94 16
6 C -0.22 -3.48 8.90 -39.37 -0.35 -3.83 16
7 C 0.31 4.44 6.50 -83.84 -0.54 3.90 16
8 N -0.65 -8.71 5.16 -8.29 -0.04 -8.75 16
9 C 0.03 0.45 4.86 -83.54 -0.41 0.05 16
10 C -0.07 -0.87 9.96 -39.40 -0.39 -1.27 16
11 C -0.20 -2.66 10.04 -39.56 -0.40 -3.05 16
12 C -0.06 -0.94 10.04 -39.56 -0.40 -1.34 16
13 C -0.22 -3.91 9.16 -39.42 -0.36 -4.27 16
14 C 0.16 3.00 5.48 -38.91 -0.21 2.79 16
15 O -0.20 -4.41 8.03 0.04 0.00 -4.41 16
16 C -0.39 -9.92 9.95 30.88 0.31 -9.61 16
17 H 0.11 2.79 5.44 -52.49 -0.29 2.51 16
18 C 0.07 1.85 5.49 -17.51 -0.10 1.76 16
19 N -0.87 -23.67 13.96 55.48 0.77 -22.90 16
20 Si 0.89 20.41 28.62 -169.99 -4.86 15.55 16
21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16
22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16
23 H -0.25 -5.63 7.11 56.52 0.40 -5.23 16
24 C -0.25 -3.05 9.85 -39.36 -0.39 -3.44 16
25 C 0.22 3.00 7.27 -39.01 -0.28 2.72 16
26 F -0.12 -1.66 16.81 2.25 0.04 -1.62 16
27 H 0.15 2.65 6.27 -52.48 -0.33 2.32 16
28 H 0.41 4.31 8.83 -40.82 -0.36 3.95 16
29 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16
30 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16
31 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16
32 H 0.14 2.68 5.64 -52.49 -0.30 2.38 16
33 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16
34 H 0.15 1.38 8.06 -52.49 -0.42 0.95 16
LS Contribution 321.09 15.07 4.84 4.84
Total: -1.00 -27.61 321.09 -5.29 -32.89
By element:
Atomic # 1 Polarization: 6.73 SS G_CDS: -2.10 Total: 4.63 kcal
Atomic # 6 Polarization: -6.76 SS G_CDS: -4.75 Total: -11.51 kcal
Atomic # 7 Polarization: -39.93 SS G_CDS: 1.51 Total: -38.42 kcal
Atomic # 8 Polarization: -4.41 SS G_CDS: 0.00 Total: -4.41 kcal
Atomic # 9 Polarization: -3.64 SS G_CDS: 0.08 Total: -3.56 kcal
Atomic # 14 Polarization: 20.41 SS G_CDS: -4.86 Total: 15.55 kcal
Total LS contribution 4.84 Total: 4.84 kcal
Total: -27.61 -5.29 -32.89 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001212603520.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.079 kcal
(2) G-P(sol) polarization free energy of solvation -27.605 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.526 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.287 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.893 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.814 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds