Wall clock time and date at job start Tue Mar 31 2020 11:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.40113 * 120.10998 * 270.92190 * 3 2 1 5 5 F 1.35097 * 120.05841 * 0.02562 * 4 3 2 6 6 C 1.37894 * 119.87925 * 179.77193 * 4 3 2 7 7 C 1.39149 * 120.11635 * 0.51063 * 6 4 3 8 8 N 1.39187 * 119.88848 * 179.72076 * 7 6 4 9 9 C 1.39797 * 119.99928 * 355.29794 * 8 7 6 10 10 C 1.38774 * 120.10786 * 254.90548 * 9 8 7 11 11 C 1.38185 * 119.99245 * 179.97438 * 10 9 8 12 12 C 1.38349 * 120.20547 * 0.02562 * 11 10 9 13 13 C 1.38173 * 120.21888 * 0.02562 * 12 11 10 14 14 C 1.38730 * 120.00135 * 359.74462 * 13 12 11 15 15 O 1.35783 * 120.10069 * 180.27702 * 14 13 12 16 16 C 1.34797 * 117.00209 * 5.65239 * 15 14 13 17 17 H 1.07993 * 120.00031 * 354.95056 * 16 15 14 18 18 C 1.38630 * 119.99959 * 174.95519 * 16 15 14 19 19 N 1.31580 * 120.00022 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00128 * 359.97438 * 18 16 15 21 21 H 1.48493 * 109.47266 * 90.00185 * 20 18 16 22 22 H 1.48500 * 109.47482 * 210.00437 * 20 18 16 23 23 H 1.48503 * 109.47063 * 330.00050 * 20 18 16 24 24 C 1.39161 * 120.22979 * 359.74343 * 7 6 4 25 25 C 1.37894 * 120.10962 * 0.02562 * 24 7 6 26 26 F 1.35102 * 120.05530 * 180.02562 * 25 24 7 27 27 H 1.08003 * 119.94049 * 180.25444 * 6 4 3 28 28 H 0.97000 * 120.00659 * 175.29565 * 8 7 6 29 29 H 1.08006 * 120.00544 * 359.97438 * 10 9 8 30 30 H 1.08001 * 119.89034 * 179.97438 * 11 10 9 31 31 H 1.07999 * 119.89186 * 179.97438 * 12 11 10 32 32 H 1.07993 * 119.99876 * 180.02562 * 13 12 11 33 33 H 0.96996 * 120.00046 * 179.97438 * 19 18 16 34 34 H 1.08000 * 119.94273 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2709 -0.0185 1.2119 5 9 2.5988 -0.0382 2.3837 6 6 4.6498 -0.0226 1.2063 7 6 5.3432 0.0031 0.0001 8 7 6.7350 0.0047 0.0001 9 6 7.4339 0.0799 1.2085 10 6 8.0513 1.2650 1.5830 11 6 8.7411 1.3369 2.7782 12 6 8.8192 0.2299 3.6044 13 6 8.2086 -0.9547 3.2395 14 6 7.5098 -1.0353 2.0437 15 8 6.9043 -2.1967 1.6859 16 6 6.9195 -3.1982 2.5880 17 1 7.4683 -3.0849 3.5112 18 6 6.2309 -4.3735 2.3307 19 7 6.2462 -5.3512 3.2111 20 14 5.2812 -4.5691 0.7341 21 1 6.1695 -5.1548 -0.3017 22 1 4.1198 -5.4676 0.9558 23 1 4.7991 -3.2403 0.2789 24 6 4.6498 0.0275 -1.2062 25 6 3.2709 0.0270 -1.2117 26 9 2.5988 0.0503 -2.3835 27 1 5.1926 -0.0415 2.1398 28 1 7.2202 -0.0464 -0.8383 29 1 7.9927 2.1311 0.9403 30 1 9.2213 2.2599 3.0678 31 1 9.3600 0.2916 4.5372 32 1 8.2716 -1.8164 3.8873 33 1 5.7640 -6.1734 3.0312 34 1 5.1926 0.0478 -2.1397 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212603520.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:25 Heat of formation + Delta-G solvation = -22.813619 kcal Electronic energy + Delta-G solvation = -25471.422484 eV Core-core repulsion = 21392.645354 eV Total energy + Delta-G solvation = -4078.777130 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.076 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.15829 -48.99024 -40.15574 -38.82111 -37.02182 -36.46486 -34.93534 -32.56529 -30.87022 -30.34482 -29.51954 -28.24132 -25.47745 -23.66931 -23.18498 -21.79723 -21.27523 -19.21674 -18.39757 -18.25389 -17.99146 -17.11589 -16.27031 -16.14669 -15.80118 -15.33594 -15.32171 -15.13753 -14.90516 -14.61380 -13.96144 -13.94897 -13.70096 -13.50270 -13.45581 -13.07971 -12.79835 -12.55844 -12.42883 -12.36296 -12.09726 -11.72905 -11.56856 -11.28929 -11.13317 -10.95635 -10.36814 -10.11089 -9.64647 -9.05563 -8.84603 -8.54128 -7.80869 -7.53172 -6.59480 -4.27026 0.71730 1.03681 1.66172 1.97363 2.69508 2.93547 3.12619 3.15999 3.19833 3.29470 3.66503 3.85323 3.88987 4.09111 4.14875 4.30214 4.51332 4.87348 4.91670 5.00983 5.12151 5.32797 5.49705 5.65886 5.70631 5.78396 5.82646 5.91245 6.09892 6.16182 6.30266 6.57688 6.72379 6.80280 7.01921 7.16971 7.38283 7.50072 7.55001 7.70500 7.84671 8.74429 9.30693 10.46980 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.010607 B = 0.006181 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.120741 B = 4528.668877 C = 5842.149189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.268 3.732 3 C -0.175 4.175 4 C 0.223 3.777 5 F -0.119 7.119 6 C -0.219 4.219 7 C 0.314 3.686 8 N -0.650 5.650 9 C 0.030 3.970 10 C -0.066 4.066 11 C -0.202 4.202 12 C -0.064 4.064 13 C -0.217 4.217 14 C 0.158 3.842 15 O -0.197 6.197 16 C -0.393 4.393 17 H 0.109 0.891 18 C 0.071 3.929 19 N -0.869 5.869 20 Si 0.895 3.105 21 H -0.273 1.273 22 H -0.280 1.280 23 H -0.252 1.252 24 C -0.248 4.248 25 C 0.220 3.780 26 F -0.123 7.123 27 H 0.155 0.845 28 H 0.410 0.590 29 H 0.119 0.881 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.138 0.862 33 H 0.282 0.718 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.029 11.988 -6.016 13.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.046 4.046 3 C -0.183 4.183 4 C 0.200 3.800 5 F -0.097 7.097 6 C -0.242 4.242 7 C 0.204 3.796 8 N -0.269 5.269 9 C -0.064 4.064 10 C -0.086 4.086 11 C -0.222 4.222 12 C -0.083 4.083 13 C -0.237 4.237 14 C 0.103 3.897 15 O -0.100 6.100 16 C -0.468 4.468 17 H 0.126 0.874 18 C -0.134 4.134 19 N -0.505 5.505 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.206 1.206 23 H -0.175 1.175 24 C -0.272 4.272 25 C 0.197 3.803 26 F -0.101 7.101 27 H 0.172 0.828 28 H 0.247 0.753 29 H 0.137 0.863 30 H 0.132 0.868 31 H 0.132 0.868 32 H 0.156 0.844 33 H 0.093 0.907 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.132 11.656 -5.997 13.157 hybrid contribution 0.128 -0.525 -0.702 0.886 sum 1.260 11.131 -6.699 13.053 Atomic orbital electron populations 1.81170 1.11638 1.10543 1.06449 1.24987 0.91952 0.93336 0.94371 1.15540 0.85353 1.24811 0.92613 1.16807 0.88992 0.94886 0.79312 1.91562 1.80316 1.92775 1.45027 1.20600 0.91478 1.12390 0.99727 1.17322 0.84265 0.86186 0.91856 1.41585 1.01360 1.76409 1.07572 1.16587 1.06914 0.92633 0.90228 1.20817 0.96569 0.94919 0.96282 1.20577 1.06392 0.98967 0.96233 1.20947 0.96598 0.92436 0.98289 1.21264 1.03910 0.99771 0.98709 1.19368 0.92026 0.85681 0.92655 1.83603 1.66104 1.18381 1.41924 1.20759 1.33538 0.92038 1.00499 0.87400 1.24442 0.96242 0.94113 0.98628 1.69634 1.40770 1.05481 1.34583 0.86317 0.79608 0.79761 0.82330 1.19825 1.20587 1.17543 1.20295 0.91631 1.16719 0.98505 1.16678 0.88885 0.95627 0.79143 1.91542 1.80494 1.93016 1.45078 0.82785 0.75278 0.86281 0.86810 0.86760 0.84400 0.90741 0.83262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.55 18.54 41.84 0.78 -6.77 16 2 C 0.27 4.45 14.62 -22.47 -0.33 4.12 16 3 C -0.18 -2.68 5.76 -106.57 -0.61 -3.29 16 4 C 0.22 3.55 7.27 -39.00 -0.28 3.27 16 5 F -0.12 -1.98 16.81 2.25 0.04 -1.94 16 6 C -0.22 -3.48 8.90 -39.37 -0.35 -3.83 16 7 C 0.31 4.44 6.50 -83.84 -0.54 3.90 16 8 N -0.65 -8.71 5.16 -8.29 -0.04 -8.75 16 9 C 0.03 0.45 4.86 -83.54 -0.41 0.05 16 10 C -0.07 -0.87 9.96 -39.40 -0.39 -1.27 16 11 C -0.20 -2.66 10.04 -39.56 -0.40 -3.05 16 12 C -0.06 -0.94 10.04 -39.56 -0.40 -1.34 16 13 C -0.22 -3.91 9.16 -39.42 -0.36 -4.27 16 14 C 0.16 3.00 5.48 -38.91 -0.21 2.79 16 15 O -0.20 -4.41 8.03 0.04 0.00 -4.41 16 16 C -0.39 -9.92 9.95 30.88 0.31 -9.61 16 17 H 0.11 2.79 5.44 -52.49 -0.29 2.51 16 18 C 0.07 1.85 5.49 -17.51 -0.10 1.76 16 19 N -0.87 -23.67 13.96 55.48 0.77 -22.90 16 20 Si 0.89 20.41 28.62 -169.99 -4.86 15.55 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.25 -5.63 7.11 56.52 0.40 -5.23 16 24 C -0.25 -3.05 9.85 -39.36 -0.39 -3.44 16 25 C 0.22 3.00 7.27 -39.01 -0.28 2.72 16 26 F -0.12 -1.66 16.81 2.25 0.04 -1.62 16 27 H 0.15 2.65 6.27 -52.48 -0.33 2.32 16 28 H 0.41 4.31 8.83 -40.82 -0.36 3.95 16 29 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 30 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 31 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 32 H 0.14 2.68 5.64 -52.49 -0.30 2.38 16 33 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.15 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 321.09 15.07 4.84 4.84 Total: -1.00 -27.61 321.09 -5.29 -32.89 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -2.10 Total: 4.63 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -4.75 Total: -11.51 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 1.51 Total: -38.42 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: 0.00 Total: -4.41 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.08 Total: -3.56 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.86 Total: 15.55 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.61 -5.29 -32.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212603520.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.079 kcal (2) G-P(sol) polarization free energy of solvation -27.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds