Wall clock time and date at job start Tue Mar 31 2020 11:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.40113 * 120.10998 * 270.92190 * 3 2 1 5 5 F 1.35097 * 120.05841 * 0.02562 * 4 3 2 6 6 C 1.37894 * 119.87925 * 179.77193 * 4 3 2 7 7 C 1.39149 * 120.11635 * 0.51063 * 6 4 3 8 8 N 1.39187 * 119.88848 * 179.72076 * 7 6 4 9 9 C 1.39797 * 119.99928 * 355.29794 * 8 7 6 10 10 C 1.38774 * 120.10786 * 254.90548 * 9 8 7 11 11 C 1.38185 * 119.99245 * 179.97438 * 10 9 8 12 12 C 1.38349 * 120.20547 * 0.02562 * 11 10 9 13 13 C 1.38173 * 120.21888 * 0.02562 * 12 11 10 14 14 C 1.38730 * 120.00135 * 359.74462 * 13 12 11 15 15 O 1.35783 * 120.10069 * 180.27702 * 14 13 12 16 16 C 1.34797 * 117.00209 * 5.65239 * 15 14 13 17 17 H 1.07993 * 120.00031 * 354.95056 * 16 15 14 18 18 C 1.38630 * 119.99959 * 174.95519 * 16 15 14 19 19 N 1.31580 * 120.00022 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00128 * 359.97438 * 18 16 15 21 21 H 1.48493 * 109.47266 * 90.00185 * 20 18 16 22 22 H 1.48500 * 109.47482 * 210.00437 * 20 18 16 23 23 H 1.48503 * 109.47063 * 330.00050 * 20 18 16 24 24 C 1.39161 * 120.22979 * 359.74343 * 7 6 4 25 25 C 1.37894 * 120.10962 * 0.02562 * 24 7 6 26 26 F 1.35102 * 120.05530 * 180.02562 * 25 24 7 27 27 H 1.08003 * 119.94049 * 180.25444 * 6 4 3 28 28 H 0.97000 * 120.00659 * 175.29565 * 8 7 6 29 29 H 1.08006 * 120.00544 * 359.97438 * 10 9 8 30 30 H 1.08001 * 119.89034 * 179.97438 * 11 10 9 31 31 H 1.07999 * 119.89186 * 179.97438 * 12 11 10 32 32 H 1.07993 * 119.99876 * 180.02562 * 13 12 11 33 33 H 0.96996 * 120.00046 * 179.97438 * 19 18 16 34 34 H 1.08000 * 119.94273 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2709 -0.0185 1.2119 5 9 2.5988 -0.0382 2.3837 6 6 4.6498 -0.0226 1.2063 7 6 5.3432 0.0031 0.0001 8 7 6.7350 0.0047 0.0001 9 6 7.4339 0.0799 1.2085 10 6 8.0513 1.2650 1.5830 11 6 8.7411 1.3369 2.7782 12 6 8.8192 0.2299 3.6044 13 6 8.2086 -0.9547 3.2395 14 6 7.5098 -1.0353 2.0437 15 8 6.9043 -2.1967 1.6859 16 6 6.9195 -3.1982 2.5880 17 1 7.4683 -3.0849 3.5112 18 6 6.2309 -4.3735 2.3307 19 7 6.2462 -5.3512 3.2111 20 14 5.2812 -4.5691 0.7341 21 1 6.1695 -5.1548 -0.3017 22 1 4.1198 -5.4676 0.9558 23 1 4.7991 -3.2403 0.2789 24 6 4.6498 0.0275 -1.2062 25 6 3.2709 0.0270 -1.2117 26 9 2.5988 0.0503 -2.3835 27 1 5.1926 -0.0415 2.1398 28 1 7.2202 -0.0464 -0.8383 29 1 7.9927 2.1311 0.9403 30 1 9.2213 2.2599 3.0678 31 1 9.3600 0.2916 4.5372 32 1 8.2716 -1.8164 3.8873 33 1 5.7640 -6.1734 3.0312 34 1 5.1926 0.0478 -2.1397 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212603520.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:24 Heat of formation + Delta-G solvation = -37.375879 kcal Electronic energy + Delta-G solvation = -25472.053951 eV Core-core repulsion = 21392.645354 eV Total energy + Delta-G solvation = -4079.408597 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.076 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.26858 -50.22563 -41.44017 -40.09565 -38.41890 -37.78125 -36.13873 -34.41819 -32.06116 -31.51166 -30.81783 -29.50486 -27.21360 -24.85775 -24.35649 -23.17442 -22.53353 -20.41884 -19.86865 -19.57126 -19.37361 -18.46698 -17.48701 -17.31780 -17.01732 -16.62715 -16.51574 -16.48277 -16.15032 -15.98209 -15.46895 -15.39086 -14.96034 -14.78401 -14.77560 -14.43424 -14.37885 -14.07045 -13.75856 -13.61737 -13.28973 -13.08615 -12.86038 -12.63534 -12.53275 -12.41522 -12.02869 -11.49800 -11.19553 -10.90325 -9.98210 -9.76689 -9.13354 -8.75694 -8.49033 -6.19392 -0.47150 -0.08771 0.42246 0.69142 1.32080 1.35468 1.39693 1.49742 1.70430 2.06125 2.26115 2.46620 2.64773 2.70787 2.78874 3.00983 3.13272 3.18020 3.75857 3.88210 3.99276 4.19630 4.29638 4.52502 4.59246 4.60833 4.66647 4.68267 4.86108 5.00552 5.07267 5.37354 5.43936 5.54637 5.69891 5.78504 5.88020 6.01814 6.25193 6.31521 6.67749 6.86992 7.59397 8.62000 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.010607 B = 0.006181 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2639.120741 B = 4528.668877 C = 5842.149189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.278 3.722 3 C -0.183 4.183 4 C 0.213 3.787 5 F -0.130 7.130 6 C -0.232 4.232 7 C 0.312 3.688 8 N -0.643 5.643 9 C 0.045 3.955 10 C -0.059 4.059 11 C -0.175 4.175 12 C -0.068 4.068 13 C -0.239 4.239 14 C 0.126 3.874 15 O -0.222 6.222 16 C -0.387 4.387 17 H 0.083 0.917 18 C 0.017 3.983 19 N -0.923 5.923 20 Si 0.947 3.053 21 H -0.265 1.265 22 H -0.285 1.285 23 H -0.245 1.245 24 C -0.223 4.223 25 C 0.225 3.775 26 F -0.119 7.119 27 H 0.136 0.864 28 H 0.428 0.572 29 H 0.161 0.839 30 H 0.156 0.844 31 H 0.139 0.861 32 H 0.109 0.891 33 H 0.281 0.719 34 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.488 15.408 -8.461 18.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.036 4.036 3 C -0.191 4.191 4 C 0.190 3.810 5 F -0.109 7.109 6 C -0.255 4.255 7 C 0.202 3.798 8 N -0.264 5.264 9 C -0.049 4.049 10 C -0.078 4.078 11 C -0.194 4.194 12 C -0.086 4.086 13 C -0.258 4.258 14 C 0.075 3.925 15 O -0.128 6.128 16 C -0.463 4.463 17 H 0.101 0.899 18 C -0.182 4.182 19 N -0.563 5.563 20 Si 0.770 3.230 21 H -0.190 1.190 22 H -0.210 1.210 23 H -0.168 1.168 24 C -0.246 4.246 25 C 0.202 3.798 26 F -0.097 7.097 27 H 0.154 0.846 28 H 0.269 0.731 29 H 0.178 0.822 30 H 0.173 0.827 31 H 0.157 0.843 32 H 0.127 0.873 33 H 0.091 0.909 34 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 2.629 15.144 -8.468 17.549 hybrid contribution -0.107 -1.176 0.122 1.187 sum 2.522 13.968 -8.346 16.466 Atomic orbital electron populations 1.81171 1.12467 1.11763 1.07357 1.25219 0.92232 0.92551 0.93553 1.15610 0.84622 1.25733 0.93167 1.16883 0.89121 0.95746 0.79204 1.91529 1.80564 1.93009 1.45773 1.20540 0.91464 1.13576 0.99968 1.17382 0.84559 0.86050 0.91841 1.41553 1.01080 1.76091 1.07671 1.16818 1.05894 0.92042 0.90142 1.21302 0.94859 0.94978 0.96671 1.21142 1.03804 0.99462 0.94998 1.21266 0.96040 0.91585 0.99682 1.21291 1.05350 1.00528 0.98670 1.19935 0.92501 0.85977 0.94130 1.83552 1.68871 1.19064 1.41362 1.20612 1.32495 0.92986 1.00212 0.89908 1.25103 0.97613 0.94140 1.01334 1.69728 1.43569 1.06370 1.36672 0.85515 0.78360 0.79685 0.79400 1.19032 1.21031 1.16781 1.20581 0.90913 1.13839 0.99262 1.16688 0.89316 0.95234 0.78580 1.91562 1.80556 1.92909 1.44654 0.84628 0.73142 0.82173 0.82670 0.84344 0.87337 0.90916 0.79187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -16.01 18.54 19.00 0.35 -15.66 16 2 C 0.28 9.06 14.62 88.33 1.29 10.35 16 3 C -0.18 -5.35 5.76 -21.13 -0.12 -5.47 16 4 C 0.21 6.68 7.27 22.64 0.16 6.85 16 5 F -0.13 -4.44 16.81 44.97 0.76 -3.69 16 6 C -0.23 -7.12 8.90 22.41 0.20 -6.92 16 7 C 0.31 7.86 6.50 38.41 0.25 8.11 16 8 N -0.64 -14.76 5.16 -180.16 -0.93 -15.69 16 9 C 0.04 1.24 4.86 38.31 0.19 1.42 16 10 C -0.06 -1.24 9.96 22.39 0.22 -1.02 16 11 C -0.18 -3.68 10.04 22.28 0.22 -3.45 16 12 C -0.07 -1.81 10.04 22.28 0.22 -1.59 16 13 C -0.24 -8.69 9.16 22.37 0.21 -8.48 16 14 C 0.13 4.74 5.48 22.70 0.12 4.87 16 15 O -0.22 -10.16 8.03 -22.76 -0.18 -10.34 16 16 C -0.39 -20.58 9.95 67.91 0.68 -19.91 16 17 H 0.08 4.67 5.44 -2.91 -0.02 4.65 16 18 C 0.02 0.92 5.49 84.82 0.47 1.39 16 19 N -0.92 -53.39 13.96 21.61 0.30 -53.09 16 20 Si 0.95 43.08 28.62 68.60 1.96 45.05 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 23 H -0.24 -10.60 7.11 99.48 0.71 -9.89 16 24 C -0.22 -4.53 9.85 22.41 0.22 -4.31 16 25 C 0.22 5.46 7.27 22.64 0.16 5.63 16 26 F -0.12 -2.82 16.81 44.97 0.76 -2.06 16 27 H 0.14 4.67 6.27 -2.91 -0.02 4.65 16 28 H 0.43 6.91 8.83 -92.71 -0.82 6.09 16 29 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 30 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 31 H 0.14 3.00 8.06 -2.91 -0.02 2.98 16 32 H 0.11 4.56 5.64 -2.91 -0.02 4.54 16 33 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 34 H 0.19 2.32 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -64.88 321.09 7.90 -56.98 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.39 Total: 11.04 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: 4.50 Total: -12.54 kcal Atomic # 7 Polarization: -84.16 SS G_CDS: -0.28 Total: -84.44 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.18 Total: -10.34 kcal Atomic # 9 Polarization: -7.26 SS G_CDS: 1.51 Total: -5.75 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 1.96 Total: 45.05 kcal Total: -64.88 7.90 -56.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212603520.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.608 kcal (2) G-P(sol) polarization free energy of solvation -64.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds