Wall clock time and date at job start Tue Mar 31 2020 11:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.40013 * 120.21283 * 197.70296 * 3 2 1 5 5 F 1.35105 * 120.05044 * 359.97438 * 4 3 2 6 6 C 1.38063 * 119.89447 * 180.25171 * 4 3 2 7 7 C 1.38517 * 120.33635 * 359.78740 * 6 4 3 8 8 C 1.38195 * 120.44040 * 359.95790 * 7 6 4 9 9 F 1.35103 * 119.95273 * 180.02562 * 8 7 6 10 10 C 1.39038 * 120.09305 * 359.97438 * 8 7 6 11 11 N 1.39182 * 120.16595 * 180.02562 * 10 8 7 12 12 C 1.39774 * 120.00024 * 19.15075 * 11 10 8 13 13 C 1.38780 * 120.10791 * 246.23259 * 12 11 10 14 14 C 1.38179 * 119.99100 * 180.27303 * 13 12 11 15 15 C 1.38357 * 120.20201 * 359.47625 * 14 13 12 16 16 C 1.38166 * 120.21979 * 0.54868 * 15 14 13 17 17 C 1.38728 * 120.00736 * 359.70265 * 16 15 14 18 18 O 1.35780 * 120.10454 * 180.02562 * 17 16 15 19 19 C 1.34805 * 117.00091 * 5.98575 * 18 17 16 20 20 H 1.07997 * 120.00180 * 354.90595 * 19 18 17 21 21 C 1.38625 * 119.99834 * 174.89773 * 19 18 17 22 22 N 1.31579 * 120.00166 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00057 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47392 * 59.99689 * 23 21 19 25 25 H 1.48501 * 109.47547 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47121 * 299.99973 * 23 21 19 27 27 H 1.08000 * 119.82809 * 179.76065 * 6 4 3 28 28 H 1.07998 * 119.77775 * 179.97438 * 7 6 4 29 29 H 0.96999 * 119.99905 * 199.15572 * 11 10 8 30 30 H 1.08003 * 120.00638 * 0.02562 * 13 12 11 31 31 H 1.07999 * 119.89747 * 179.72508 * 14 13 12 32 32 H 1.08008 * 119.88584 * 180.27810 * 15 14 13 33 33 H 1.08000 * 120.00240 * 179.72874 * 16 15 14 34 34 H 0.96999 * 120.00077 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2720 1.1536 0.3679 5 9 2.6014 2.2710 0.7242 6 6 4.6526 1.1485 0.3606 7 6 5.3461 0.0065 -0.0049 8 6 4.6653 -1.1408 -0.3655 9 9 5.3516 -2.2492 -0.7198 10 6 3.2750 -1.1562 -0.3631 11 7 2.5877 -2.3110 -0.7255 12 6 3.2390 -3.5476 -0.7042 13 6 3.4656 -4.2355 -1.8880 14 6 4.1046 -5.4604 -1.8635 15 6 4.5298 -5.9998 -0.6625 16 6 4.3082 -5.3225 0.5212 17 6 3.6629 -4.0945 0.5076 18 8 3.4446 -3.4269 1.6696 19 6 3.9875 -3.9499 2.7872 20 1 4.4953 -4.9022 2.7463 21 6 3.8941 -3.2653 3.9890 22 7 3.2760 -2.1048 4.0388 23 14 4.6470 -3.9896 5.5375 24 1 6.1077 -4.1701 5.3400 25 1 4.4123 -3.0695 6.6792 26 1 4.0200 -5.3049 5.8242 27 1 5.1946 2.0396 0.6408 28 1 6.4261 0.0127 -0.0079 29 1 1.6569 -2.2576 -0.9929 30 1 3.1389 -3.8154 -2.8278 31 1 4.2762 -5.9966 -2.7852 32 1 5.0328 -6.9555 -0.6498 33 1 4.6377 -5.7488 1.4572 34 1 3.2103 -1.6260 4.8798 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212603638.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:00 Heat of formation + Delta-G solvation = -16.149365 kcal Electronic energy + Delta-G solvation = -26097.147662 eV Core-core repulsion = 22018.659516 eV Total energy + Delta-G solvation = -4078.488146 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.076 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.82666 -48.32986 -39.71227 -38.67333 -36.63375 -36.07194 -35.02762 -32.35797 -31.01801 -29.80108 -29.05395 -27.60459 -25.43973 -24.06023 -22.73299 -21.78017 -20.94987 -19.07019 -18.09706 -17.87708 -17.78138 -16.68346 -16.00786 -15.91359 -15.59082 -15.25455 -14.97124 -14.68188 -14.60732 -14.11605 -13.93735 -13.60416 -13.44325 -13.36745 -13.13913 -13.02953 -12.79558 -12.53677 -12.00094 -11.79925 -11.74728 -11.49295 -11.17704 -11.08797 -11.01086 -10.89262 -10.57108 -10.13136 -9.54720 -8.91865 -8.56271 -8.27339 -7.52431 -7.10584 -6.51794 -4.11290 0.83758 1.37585 1.98421 2.24426 2.85804 3.08493 3.09183 3.09386 3.12407 3.45835 3.83717 3.89846 4.08460 4.34908 4.41256 4.69095 4.89009 4.97857 5.09217 5.17801 5.37871 5.53574 5.67378 5.85327 5.95538 5.97710 6.10683 6.18780 6.27835 6.42170 6.55229 6.81299 6.92647 6.99502 7.18570 7.25180 7.41247 7.66244 7.72494 7.85004 7.94102 8.92185 9.57019 10.63895 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.009698 B = 0.007186 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.594491 B = 3895.688022 C = 5442.283093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.270 3.730 3 C -0.117 4.117 4 C 0.179 3.821 5 F -0.129 7.129 6 C -0.185 4.185 7 C -0.057 4.057 8 C 0.041 3.959 9 F -0.120 7.120 10 C 0.279 3.721 11 N -0.657 5.657 12 C 0.047 3.953 13 C -0.070 4.070 14 C -0.205 4.205 15 C -0.068 4.068 16 C -0.225 4.225 17 C 0.154 3.846 18 O -0.162 6.162 19 C -0.396 4.396 20 H 0.091 0.909 21 C 0.045 3.955 22 N -0.851 5.851 23 Si 0.937 3.063 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.270 1.270 27 H 0.147 0.853 28 H 0.147 0.853 29 H 0.405 0.595 30 H 0.115 0.885 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.130 0.870 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.461 2.123 -8.738 10.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.045 4.045 3 C -0.127 4.127 4 C 0.156 3.844 5 F -0.107 7.107 6 C -0.206 4.206 7 C -0.077 4.077 8 C 0.017 3.983 9 F -0.098 7.098 10 C 0.169 3.831 11 N -0.278 5.278 12 C -0.047 4.047 13 C -0.090 4.090 14 C -0.225 4.225 15 C -0.087 4.087 16 C -0.245 4.245 17 C 0.097 3.903 18 O -0.063 6.063 19 C -0.472 4.472 20 H 0.109 0.891 21 C -0.161 4.161 22 N -0.484 5.484 23 Si 0.762 3.238 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.195 1.195 27 H 0.165 0.835 28 H 0.165 0.835 29 H 0.242 0.758 30 H 0.133 0.867 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.148 0.852 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.586 2.354 -8.473 9.497 hybrid contribution 0.462 -0.517 0.961 1.185 sum 4.048 1.837 -7.512 8.729 Atomic orbital electron populations 1.81172 1.11605 1.06951 1.10014 1.25000 0.92004 0.94097 0.93363 1.15082 0.84979 0.94997 1.17601 1.17162 0.89690 0.81066 0.96462 1.91513 1.80799 1.49542 1.88896 1.20493 0.91032 1.00392 1.08659 1.20876 1.00953 0.90498 0.95392 1.16904 0.87405 0.85122 1.08880 1.91566 1.78561 1.50115 1.89597 1.17351 0.89799 0.85452 0.90542 1.41391 1.13073 1.02241 1.71060 1.16599 1.09188 0.87771 0.91113 1.20700 0.97778 0.95217 0.95265 1.20442 1.07056 0.97539 0.97416 1.20824 0.97226 0.98331 0.92287 1.21069 1.07647 0.96726 0.99029 1.19508 0.93071 0.90883 0.86849 1.83989 1.63562 1.46849 1.11948 1.21262 1.36319 1.05544 0.84040 0.89123 1.25247 0.96819 0.95545 0.98465 1.70034 1.38345 1.12699 1.27349 0.85834 0.79431 0.78746 0.79791 1.19404 1.20218 1.19539 0.83538 0.83486 0.75830 0.86739 0.87163 0.87210 0.85190 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -8.30 18.54 41.84 0.78 -7.53 16 2 C 0.27 5.06 13.84 -22.47 -0.31 4.75 16 3 C -0.12 -2.07 5.76 -106.51 -0.61 -2.69 16 4 C 0.18 2.85 7.27 -38.98 -0.28 2.57 16 5 F -0.13 -2.06 16.81 2.25 0.04 -2.02 16 6 C -0.18 -2.51 10.00 -39.54 -0.40 -2.90 16 7 C -0.06 -0.81 10.00 -39.49 -0.39 -1.21 16 8 C 0.04 0.71 7.02 -39.30 -0.28 0.44 16 9 F -0.12 -2.27 13.98 2.25 0.03 -2.24 16 10 C 0.28 5.12 5.99 -83.43 -0.50 4.62 16 11 N -0.66 -12.14 5.06 -8.04 -0.04 -12.18 16 12 C 0.05 0.91 3.95 -83.55 -0.33 0.58 16 13 C -0.07 -1.17 9.79 -39.40 -0.39 -1.55 16 14 C -0.20 -3.26 10.04 -39.56 -0.40 -3.66 16 15 C -0.07 -1.16 10.04 -39.56 -0.40 -1.56 16 16 C -0.22 -4.58 9.16 -39.43 -0.36 -4.94 16 17 C 0.15 3.45 5.62 -38.91 -0.22 3.24 16 18 O -0.16 -4.27 9.04 0.03 0.00 -4.27 16 19 C -0.40 -10.46 9.49 30.88 0.29 -10.17 16 20 H 0.09 2.23 5.21 -52.49 -0.27 1.95 16 21 C 0.05 1.18 5.49 -17.52 -0.10 1.09 16 22 N -0.85 -23.81 13.67 55.48 0.76 -23.05 16 23 Si 0.94 19.86 29.55 -169.99 -5.02 14.83 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 25 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 26 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 27 H 0.15 1.51 8.06 -52.49 -0.42 1.08 16 28 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 29 H 0.40 6.89 7.88 -40.82 -0.32 6.56 16 30 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 31 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 33 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 34 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 318.78 15.07 4.80 4.80 Total: -1.00 -30.00 318.78 -5.46 -35.46 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -2.14 Total: 7.58 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -4.67 Total: -11.40 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 1.49 Total: -42.75 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: 0.00 Total: -4.27 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.07 Total: -4.26 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.00 -5.46 -35.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212603638.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.313 kcal (2) G-P(sol) polarization free energy of solvation -29.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds