Wall clock time and date at job start Tue Mar 31 2020 11:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.40013 * 120.21283 * 197.70296 * 3 2 1 5 5 F 1.35105 * 120.05044 * 359.97438 * 4 3 2 6 6 C 1.38063 * 119.89447 * 180.25171 * 4 3 2 7 7 C 1.38517 * 120.33635 * 359.78740 * 6 4 3 8 8 C 1.38195 * 120.44040 * 359.95790 * 7 6 4 9 9 F 1.35103 * 119.95273 * 180.02562 * 8 7 6 10 10 C 1.39038 * 120.09305 * 359.97438 * 8 7 6 11 11 N 1.39182 * 120.16595 * 180.02562 * 10 8 7 12 12 C 1.39774 * 120.00024 * 19.15075 * 11 10 8 13 13 C 1.38780 * 120.10791 * 246.23259 * 12 11 10 14 14 C 1.38179 * 119.99100 * 180.27303 * 13 12 11 15 15 C 1.38357 * 120.20201 * 359.47625 * 14 13 12 16 16 C 1.38166 * 120.21979 * 0.54868 * 15 14 13 17 17 C 1.38728 * 120.00736 * 359.70265 * 16 15 14 18 18 O 1.35780 * 120.10454 * 180.02562 * 17 16 15 19 19 C 1.34805 * 117.00091 * 5.98575 * 18 17 16 20 20 H 1.07997 * 120.00180 * 354.90595 * 19 18 17 21 21 C 1.38625 * 119.99834 * 174.89773 * 19 18 17 22 22 N 1.31579 * 120.00166 * 359.97438 * 21 19 18 23 23 Si 1.86792 * 120.00057 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47392 * 59.99689 * 23 21 19 25 25 H 1.48501 * 109.47547 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47121 * 299.99973 * 23 21 19 27 27 H 1.08000 * 119.82809 * 179.76065 * 6 4 3 28 28 H 1.07998 * 119.77775 * 179.97438 * 7 6 4 29 29 H 0.96999 * 119.99905 * 199.15572 * 11 10 8 30 30 H 1.08003 * 120.00638 * 0.02562 * 13 12 11 31 31 H 1.07999 * 119.89747 * 179.72508 * 14 13 12 32 32 H 1.08008 * 119.88584 * 180.27810 * 15 14 13 33 33 H 1.08000 * 120.00240 * 179.72874 * 16 15 14 34 34 H 0.96999 * 120.00077 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2720 1.1536 0.3679 5 9 2.6014 2.2710 0.7242 6 6 4.6526 1.1485 0.3606 7 6 5.3461 0.0065 -0.0049 8 6 4.6653 -1.1408 -0.3655 9 9 5.3516 -2.2492 -0.7198 10 6 3.2750 -1.1562 -0.3631 11 7 2.5877 -2.3110 -0.7255 12 6 3.2390 -3.5476 -0.7042 13 6 3.4656 -4.2355 -1.8880 14 6 4.1046 -5.4604 -1.8635 15 6 4.5298 -5.9998 -0.6625 16 6 4.3082 -5.3225 0.5212 17 6 3.6629 -4.0945 0.5076 18 8 3.4446 -3.4269 1.6696 19 6 3.9875 -3.9499 2.7872 20 1 4.4953 -4.9022 2.7463 21 6 3.8941 -3.2653 3.9890 22 7 3.2760 -2.1048 4.0388 23 14 4.6470 -3.9896 5.5375 24 1 6.1077 -4.1701 5.3400 25 1 4.4123 -3.0695 6.6792 26 1 4.0200 -5.3049 5.8242 27 1 5.1946 2.0396 0.6408 28 1 6.4261 0.0127 -0.0079 29 1 1.6569 -2.2576 -0.9929 30 1 3.1389 -3.8154 -2.8278 31 1 4.2762 -5.9966 -2.7852 32 1 5.0328 -6.9555 -0.6498 33 1 4.6377 -5.7488 1.4572 34 1 3.2103 -1.6260 4.8798 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212603638.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:00 Heat of formation + Delta-G solvation = -33.002448 kcal Electronic energy + Delta-G solvation = -26097.878466 eV Core-core repulsion = 22018.659516 eV Total energy + Delta-G solvation = -4079.218951 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.076 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.10217 -49.71271 -41.18294 -40.09357 -38.22600 -37.54985 -36.39146 -34.22287 -32.35289 -31.16126 -30.51495 -29.02703 -27.27079 -25.36934 -24.08039 -23.33148 -22.36029 -20.43530 -19.81103 -19.36047 -19.09714 -18.18974 -17.41703 -17.28529 -16.90484 -16.62030 -16.40348 -16.27235 -16.15353 -15.51031 -15.37399 -15.17248 -14.90914 -14.82285 -14.51987 -14.47259 -14.42803 -13.84933 -13.55222 -13.39542 -13.19025 -12.94557 -12.60750 -12.55402 -12.40669 -12.32806 -12.18535 -11.50045 -11.22960 -10.75742 -9.89624 -9.67282 -9.03267 -8.55433 -8.40086 -6.07519 -0.47267 0.08788 0.55914 0.76493 1.36263 1.37359 1.45101 1.50146 1.71636 2.08674 2.19095 2.46749 2.72872 2.86184 3.07774 3.18831 3.38704 3.48138 3.72182 3.97105 4.08956 4.19265 4.30584 4.55434 4.64708 4.69886 4.78532 4.93229 4.97874 5.09168 5.12615 5.15994 5.51992 5.61353 5.66196 5.77943 5.98566 6.04085 6.24642 6.25963 6.48059 7.03274 7.81062 8.78816 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.009698 B = 0.007186 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.594491 B = 3895.688022 C = 5442.283093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.278 3.722 3 C -0.136 4.136 4 C 0.172 3.828 5 F -0.130 7.130 6 C -0.165 4.165 7 C -0.043 4.043 8 C 0.015 3.985 9 F -0.132 7.132 10 C 0.263 3.737 11 N -0.664 5.664 12 C 0.047 3.953 13 C -0.072 4.072 14 C -0.180 4.180 15 C -0.068 4.068 16 C -0.241 4.241 17 C 0.118 3.882 18 O -0.207 6.207 19 C -0.412 4.412 20 H 0.097 0.903 21 C -0.011 4.011 22 N -0.905 5.905 23 Si 1.005 2.995 24 H -0.256 1.256 25 H -0.276 1.276 26 H -0.264 1.264 27 H 0.190 0.810 28 H 0.184 0.816 29 H 0.406 0.594 30 H 0.145 0.855 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.120 0.880 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.613 1.396 -10.304 12.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.036 4.036 3 C -0.146 4.146 4 C 0.149 3.851 5 F -0.108 7.108 6 C -0.185 4.185 7 C -0.063 4.063 8 C -0.009 4.009 9 F -0.111 7.111 10 C 0.153 3.847 11 N -0.286 5.286 12 C -0.046 4.046 13 C -0.091 4.091 14 C -0.199 4.199 15 C -0.086 4.086 16 C -0.261 4.261 17 C 0.065 3.935 18 O -0.113 6.113 19 C -0.488 4.488 20 H 0.114 0.886 21 C -0.210 4.210 22 N -0.542 5.542 23 Si 0.825 3.175 24 H -0.181 1.181 25 H -0.200 1.200 26 H -0.189 1.189 27 H 0.207 0.793 28 H 0.201 0.799 29 H 0.244 0.756 30 H 0.163 0.837 31 H 0.172 0.828 32 H 0.163 0.837 33 H 0.137 0.863 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.750 1.604 -10.095 11.728 hybrid contribution -0.158 -0.370 1.117 1.187 sum 5.592 1.234 -8.978 10.649 Atomic orbital electron populations 1.81148 1.12289 1.07850 1.11223 1.25280 0.92362 0.93343 0.92614 1.15278 0.84424 0.95942 1.18911 1.17423 0.90680 0.80520 0.96454 1.91512 1.81048 1.49380 1.88875 1.20970 0.89922 1.01503 1.06144 1.21349 1.02758 0.89203 0.92961 1.17295 0.87351 0.85887 1.10344 1.91516 1.78647 1.50994 1.89909 1.17522 0.90429 0.85471 0.91230 1.41400 1.13293 1.02259 1.71657 1.16944 1.08323 0.88187 0.91155 1.21135 0.97196 0.95417 0.95381 1.21023 1.03655 0.96572 0.98644 1.21226 0.96670 0.99371 0.91298 1.21230 1.08006 0.96599 1.00228 1.20076 0.94646 0.91866 0.86896 1.83970 1.66008 1.48436 1.12839 1.21652 1.36396 1.05901 0.84846 0.88563 1.26301 0.97323 0.95904 1.01459 1.70183 1.41415 1.14705 1.27872 0.84836 0.79064 0.77977 0.75591 1.18063 1.20030 1.18853 0.79323 0.79859 0.75645 0.83735 0.82819 0.83655 0.86253 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -18.35 18.54 19.00 0.35 -18.00 16 2 C 0.28 10.82 13.84 88.33 1.22 12.04 16 3 C -0.14 -4.92 5.76 -21.09 -0.12 -5.04 16 4 C 0.17 5.37 7.27 22.66 0.16 5.54 16 5 F -0.13 -4.06 16.81 44.97 0.76 -3.30 16 6 C -0.17 -4.08 10.00 22.29 0.22 -3.86 16 7 C -0.04 -1.13 10.00 22.33 0.22 -0.91 16 8 C 0.01 0.51 7.02 22.45 0.16 0.67 16 9 F -0.13 -4.95 13.98 44.97 0.63 -4.32 16 10 C 0.26 9.82 5.99 38.68 0.23 10.05 16 11 N -0.66 -25.07 5.06 -179.34 -0.91 -25.98 16 12 C 0.05 1.84 3.95 38.32 0.15 1.99 16 13 C -0.07 -2.21 9.79 22.39 0.22 -2.00 16 14 C -0.18 -4.98 10.04 22.28 0.22 -4.75 16 15 C -0.07 -2.10 10.04 22.28 0.22 -1.87 16 16 C -0.24 -9.76 9.16 22.37 0.20 -9.56 16 17 C 0.12 5.43 5.62 22.70 0.13 5.56 16 18 O -0.21 -11.47 9.04 -22.83 -0.21 -11.68 16 19 C -0.41 -22.66 9.49 67.91 0.64 -22.02 16 20 H 0.10 4.92 5.21 -2.91 -0.02 4.90 16 21 C -0.01 -0.58 5.49 84.82 0.47 -0.11 16 22 N -0.90 -52.99 13.67 21.61 0.30 -52.70 16 23 Si 1.00 41.65 29.55 68.60 2.03 43.67 16 24 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 25 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 27 H 0.19 3.06 8.06 -2.91 -0.02 3.04 16 28 H 0.18 3.45 8.06 -2.91 -0.02 3.43 16 29 H 0.41 14.36 7.88 -92.71 -0.73 13.63 16 30 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 31 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 32 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 33 H 0.12 4.98 5.64 -2.91 -0.02 4.96 16 34 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -69.86 318.78 7.78 -62.09 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.47 Total: 24.50 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: 4.36 Total: -14.28 kcal Atomic # 7 Polarization: -96.42 SS G_CDS: -0.26 Total: -96.68 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -0.21 Total: -11.68 kcal Atomic # 9 Polarization: -9.01 SS G_CDS: 1.38 Total: -7.62 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Total: -69.86 7.78 -62.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212603638.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.085 kcal (2) G-P(sol) polarization free energy of solvation -69.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds