Wall clock time and date at job start Tue Mar 31 2020 11:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39824 * 120.16880 * 204.43686 * 3 2 1 5 5 C 1.37862 * 119.91857 * 180.02562 * 4 3 2 6 6 F 1.35099 * 119.86389 * 179.97438 * 5 4 3 7 7 C 1.39034 * 120.27586 * 359.97438 * 5 4 3 8 8 F 1.35097 * 119.82437 * 180.02562 * 7 5 4 9 9 C 1.38254 * 120.35512 * 359.79185 * 7 5 4 10 10 C 1.38810 * 120.06791 * 0.46135 * 9 7 5 11 11 N 1.39153 * 120.13452 * 179.79590 * 10 9 7 12 12 C 1.39776 * 119.99917 * 250.88304 * 11 10 9 13 13 C 1.38976 * 120.00928 * 7.36457 * 12 11 10 14 14 C 1.37990 * 119.99655 * 179.78657 * 13 12 11 15 15 C 1.38915 * 120.00405 * 0.49319 * 14 13 12 16 16 O 1.35783 * 119.99405 * 179.72322 * 15 14 13 17 17 C 1.34809 * 117.00115 * 185.40894 * 16 15 14 18 18 H 1.08002 * 120.00019 * 354.85127 * 17 16 15 19 19 C 1.38613 * 119.99972 * 174.85741 * 17 16 15 20 20 N 1.31584 * 120.00101 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00012 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47169 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47136 * 120.00069 * 21 19 17 24 24 H 1.48500 * 109.46960 * 239.99582 * 21 19 17 25 25 C 1.38916 * 120.01472 * 359.73754 * 15 14 13 26 26 C 1.37992 * 120.00752 * 0.02601 * 25 15 14 27 27 H 1.08000 * 120.04283 * 0.04673 * 4 3 2 28 28 H 1.07998 * 119.96502 * 180.23604 * 9 7 5 29 29 H 0.97005 * 119.99843 * 70.60508 * 11 10 9 30 30 H 1.08009 * 119.99959 * 0.02562 * 13 12 11 31 31 H 1.07996 * 119.99943 * 180.22938 * 14 13 12 32 32 H 0.97009 * 120.00373 * 180.02562 * 20 19 17 33 33 H 1.08001 * 119.99369 * 180.02562 * 25 15 14 34 34 H 1.07998 * 120.00072 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2702 1.1015 0.5001 5 6 4.6488 1.0969 0.4971 6 9 5.3262 2.1613 0.9801 7 6 5.3450 0.0013 -0.0009 8 9 6.6960 0.0062 0.0011 9 6 4.6622 -1.0953 -0.4936 10 6 3.2742 -1.1039 -0.5025 11 7 2.5856 -2.2050 -1.0020 12 6 1.8989 -2.1082 -2.2157 13 6 2.0278 -0.9668 -2.9981 14 6 1.3534 -0.8734 -4.1983 15 6 0.5375 -1.9157 -4.6196 16 8 -0.1306 -1.8211 -5.7980 17 6 -0.9909 -2.8155 -6.0953 18 1 -1.0624 -3.6787 -5.4501 19 6 -1.7838 -2.7301 -7.2291 20 7 -1.6970 -1.6782 -8.0149 21 14 -2.9755 -4.1082 -7.6415 22 1 -2.8827 -5.1691 -6.6065 23 1 -4.3597 -3.5717 -7.6769 24 1 -2.6318 -4.6791 -8.9686 25 6 0.4046 -3.0547 -3.8355 26 6 1.0827 -3.1508 -2.6376 27 1 2.7333 1.9543 0.8885 28 1 5.2094 -1.9445 -0.8755 29 1 2.5854 -3.0410 -0.5100 30 1 2.6590 -0.1547 -2.6685 31 1 1.4564 0.0120 -4.8080 32 1 -2.2521 -1.6183 -8.8082 33 1 -0.2295 -3.8651 -4.1636 34 1 0.9790 -4.0362 -2.0279 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212611492.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:04 Heat of formation + Delta-G solvation = -18.599372 kcal Electronic energy + Delta-G solvation = -24292.204033 eV Core-core repulsion = 20213.609647 eV Total energy + Delta-G solvation = -4078.594386 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.076 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.85060 -48.91740 -40.33988 -38.89715 -37.00339 -36.38016 -34.56049 -32.21311 -31.59459 -30.51052 -29.75825 -27.34825 -25.30578 -24.44839 -23.30196 -22.10803 -21.05598 -19.64509 -18.43576 -17.88720 -17.85164 -17.22300 -16.96507 -16.62817 -16.37763 -15.42225 -15.31780 -14.66543 -14.56103 -14.38889 -14.26818 -14.10641 -13.92057 -13.61024 -13.58423 -13.00988 -12.86137 -12.62404 -12.55950 -12.21807 -11.94126 -11.83454 -11.66961 -11.48904 -11.08245 -10.71761 -10.43455 -9.84623 -9.49215 -9.35631 -8.98927 -8.60490 -8.34245 -6.72734 -6.43222 -4.00916 0.06160 0.46133 2.05254 2.28374 2.42685 2.59057 3.09051 3.12277 3.14231 3.19408 3.34144 3.41825 3.62518 3.95253 3.97564 4.21725 4.50925 4.57658 4.78806 5.08839 5.10821 5.23291 5.25717 5.34066 5.46817 5.57430 5.68274 5.97401 6.07958 6.14783 6.33496 6.68743 6.72975 6.92979 7.19131 7.24438 7.41594 7.44186 7.68050 7.83296 8.00629 9.02425 9.73088 10.75011 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.025455 B = 0.002797 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.697007 B =10008.766067 C =10136.395734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C 0.251 3.749 3 C -0.020 4.020 4 C -0.069 4.069 5 C 0.056 3.944 6 F -0.124 7.124 7 C 0.110 3.890 8 F -0.121 7.121 9 C -0.142 4.142 10 C 0.243 3.757 11 N -0.707 5.707 12 C 0.093 3.907 13 C -0.126 4.126 14 C -0.154 4.154 15 C 0.128 3.872 16 O -0.181 6.181 17 C -0.390 4.390 18 H 0.091 0.909 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.939 3.061 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.197 4.197 26 C -0.117 4.117 27 H 0.158 0.842 28 H 0.160 0.840 29 H 0.410 0.590 30 H 0.110 0.890 31 H 0.120 0.880 32 H 0.269 0.731 33 H 0.131 0.869 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.275 1.337 17.316 21.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.060 5.060 2 C -0.065 4.065 3 C -0.026 4.026 4 C -0.091 4.091 5 C 0.035 3.965 6 F -0.102 7.102 7 C 0.088 3.912 8 F -0.099 7.099 9 C -0.163 4.163 10 C 0.143 3.857 11 N -0.340 5.340 12 C -0.001 4.001 13 C -0.148 4.148 14 C -0.174 4.174 15 C 0.075 3.925 16 O -0.085 6.085 17 C -0.466 4.466 18 H 0.108 0.892 19 C -0.166 4.166 20 N -0.499 5.499 21 Si 0.764 3.236 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.217 4.217 26 C -0.138 4.138 27 H 0.176 0.824 28 H 0.177 0.823 29 H 0.248 0.752 30 H 0.128 0.872 31 H 0.138 0.862 32 H 0.079 0.921 33 H 0.149 0.851 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 11.471 1.734 16.864 20.470 hybrid contribution 0.253 -0.840 0.050 0.879 sum 11.725 0.893 16.914 20.600 Atomic orbital electron populations 1.81283 1.11628 1.06304 1.06813 1.25009 0.92005 0.94705 0.94801 1.16266 0.85669 0.96665 1.04045 1.20905 0.91324 0.98543 0.98293 1.17249 0.89821 0.85493 1.03937 1.91565 1.79684 1.53246 1.85715 1.17653 0.77617 0.94678 1.01235 1.91574 1.27664 1.96581 1.94082 1.21343 0.93676 0.98881 1.02442 1.17033 0.89054 0.87913 0.91696 1.41452 1.57764 1.11624 1.23199 1.17244 0.99233 0.96926 0.86712 1.20211 1.02620 0.96834 0.95106 1.20016 1.01385 0.98793 0.97236 1.19299 0.93085 0.93090 0.87052 1.83986 1.49453 1.45598 1.29435 1.21318 1.17014 0.98512 1.09782 0.89181 1.25259 0.97715 0.98186 0.95410 1.70058 1.38479 1.27715 1.13652 0.85670 0.79492 0.79615 0.78776 1.19160 1.20188 1.20173 1.21000 1.04802 0.99807 0.96087 1.20232 0.98434 0.97689 0.97474 0.82418 0.82268 0.75192 0.87169 0.86182 0.92136 0.85131 0.87180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -6.20 18.54 41.84 0.78 -5.43 16 2 C 0.25 3.30 13.79 -22.47 -0.31 2.99 16 3 C -0.02 -0.20 5.11 -106.57 -0.54 -0.74 16 4 C -0.07 -0.54 9.73 -39.13 -0.38 -0.92 16 5 C 0.06 0.46 7.29 -39.42 -0.29 0.18 16 6 F -0.12 -1.14 17.17 2.25 0.04 -1.10 16 7 C 0.11 0.92 7.30 -39.28 -0.29 0.64 16 8 F -0.12 -1.12 17.17 2.25 0.04 -1.09 16 9 C -0.14 -1.13 9.93 -39.36 -0.39 -1.52 16 10 C 0.24 2.34 4.69 -83.51 -0.39 1.94 16 11 N -0.71 -7.84 4.96 -8.18 -0.04 -7.88 16 12 C 0.09 1.43 5.93 -83.69 -0.50 0.94 16 13 C -0.13 -2.14 8.71 -39.40 -0.34 -2.48 16 14 C -0.15 -3.17 9.98 -39.42 -0.39 -3.57 16 15 C 0.13 3.03 6.65 -39.08 -0.26 2.77 16 16 O -0.18 -5.12 9.75 0.01 0.00 -5.12 16 17 C -0.39 -10.83 9.48 30.87 0.29 -10.53 16 18 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 19 C 0.04 1.05 5.49 -17.52 -0.10 0.95 16 20 N -0.86 -25.37 13.67 55.48 0.76 -24.61 16 21 Si 0.94 20.53 29.55 -169.99 -5.02 15.51 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 25 C -0.20 -4.12 9.16 -39.42 -0.36 -4.48 16 26 C -0.12 -1.99 9.89 -39.40 -0.39 -2.38 16 27 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 28 H 0.16 1.05 8.06 -52.49 -0.42 0.62 16 29 H 0.41 3.58 8.84 -40.82 -0.36 3.22 16 30 H 0.11 1.61 6.68 -52.48 -0.35 1.26 16 31 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 32 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.13 2.75 5.63 -52.49 -0.30 2.45 16 34 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 322.16 15.07 4.85 4.85 Total: -1.00 -31.87 322.16 -5.34 -37.21 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -2.11 Total: 3.86 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -4.64 Total: -16.22 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 1.49 Total: -37.91 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: 0.00 Total: -5.12 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.08 Total: -2.19 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.87 -5.34 -37.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212611492.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.611 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds