Wall clock time and date at job start Tue Mar 31 2020 11:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39824 * 120.16880 * 204.43686 * 3 2 1 5 5 C 1.37862 * 119.91857 * 180.02562 * 4 3 2 6 6 F 1.35099 * 119.86389 * 179.97438 * 5 4 3 7 7 C 1.39034 * 120.27586 * 359.97438 * 5 4 3 8 8 F 1.35097 * 119.82437 * 180.02562 * 7 5 4 9 9 C 1.38254 * 120.35512 * 359.79185 * 7 5 4 10 10 C 1.38810 * 120.06791 * 0.46135 * 9 7 5 11 11 N 1.39153 * 120.13452 * 179.79590 * 10 9 7 12 12 C 1.39776 * 119.99917 * 250.88304 * 11 10 9 13 13 C 1.38976 * 120.00928 * 7.36457 * 12 11 10 14 14 C 1.37990 * 119.99655 * 179.78657 * 13 12 11 15 15 C 1.38915 * 120.00405 * 0.49319 * 14 13 12 16 16 O 1.35783 * 119.99405 * 179.72322 * 15 14 13 17 17 C 1.34809 * 117.00115 * 185.40894 * 16 15 14 18 18 H 1.08002 * 120.00019 * 354.85127 * 17 16 15 19 19 C 1.38613 * 119.99972 * 174.85741 * 17 16 15 20 20 N 1.31584 * 120.00101 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00012 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47169 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47136 * 120.00069 * 21 19 17 24 24 H 1.48500 * 109.46960 * 239.99582 * 21 19 17 25 25 C 1.38916 * 120.01472 * 359.73754 * 15 14 13 26 26 C 1.37992 * 120.00752 * 0.02601 * 25 15 14 27 27 H 1.08000 * 120.04283 * 0.04673 * 4 3 2 28 28 H 1.07998 * 119.96502 * 180.23604 * 9 7 5 29 29 H 0.97005 * 119.99843 * 70.60508 * 11 10 9 30 30 H 1.08009 * 119.99959 * 0.02562 * 13 12 11 31 31 H 1.07996 * 119.99943 * 180.22938 * 14 13 12 32 32 H 0.97009 * 120.00373 * 180.02562 * 20 19 17 33 33 H 1.08001 * 119.99369 * 180.02562 * 25 15 14 34 34 H 1.07998 * 120.00072 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2702 1.1015 0.5001 5 6 4.6488 1.0969 0.4971 6 9 5.3262 2.1613 0.9801 7 6 5.3450 0.0013 -0.0009 8 9 6.6960 0.0062 0.0011 9 6 4.6622 -1.0953 -0.4936 10 6 3.2742 -1.1039 -0.5025 11 7 2.5856 -2.2050 -1.0020 12 6 1.8989 -2.1082 -2.2157 13 6 2.0278 -0.9668 -2.9981 14 6 1.3534 -0.8734 -4.1983 15 6 0.5375 -1.9157 -4.6196 16 8 -0.1306 -1.8211 -5.7980 17 6 -0.9909 -2.8155 -6.0953 18 1 -1.0624 -3.6787 -5.4501 19 6 -1.7838 -2.7301 -7.2291 20 7 -1.6970 -1.6782 -8.0149 21 14 -2.9755 -4.1082 -7.6415 22 1 -2.8827 -5.1691 -6.6065 23 1 -4.3597 -3.5717 -7.6769 24 1 -2.6318 -4.6791 -8.9686 25 6 0.4046 -3.0547 -3.8355 26 6 1.0827 -3.1508 -2.6376 27 1 2.7333 1.9543 0.8885 28 1 5.2094 -1.9445 -0.8755 29 1 2.5854 -3.0410 -0.5100 30 1 2.6590 -0.1547 -2.6685 31 1 1.4564 0.0120 -4.8080 32 1 -2.2521 -1.6183 -8.8082 33 1 -0.2295 -3.8651 -4.1636 34 1 0.9790 -4.0362 -2.0279 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212611492.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:03 Heat of formation + Delta-G solvation = -37.703237 kcal Electronic energy + Delta-G solvation = -24293.032439 eV Core-core repulsion = 20213.609647 eV Total energy + Delta-G solvation = -4079.422792 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.076 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.56558 -49.63456 -41.36694 -40.38532 -38.47870 -37.46531 -35.80310 -34.14561 -32.37009 -31.96259 -30.88572 -28.71608 -27.16809 -25.23058 -24.36757 -23.51425 -22.48264 -20.49750 -19.89206 -19.19382 -18.82037 -18.45579 -18.06962 -17.61792 -17.34411 -16.46061 -16.21396 -16.02996 -15.86471 -15.47113 -15.42153 -15.27052 -15.08848 -14.89514 -14.84154 -14.47758 -14.18496 -14.00931 -13.69458 -13.47002 -13.40269 -13.13996 -12.81215 -12.74684 -12.64281 -12.32133 -12.09589 -11.23169 -11.14015 -10.55113 -10.21694 -9.85517 -9.76082 -8.43240 -8.19436 -6.08141 -0.72406 -0.23481 0.51743 0.79369 1.35644 1.43833 1.53593 1.57040 1.57558 2.16160 2.20649 2.47568 2.52333 2.82532 2.85076 3.16877 3.24616 3.54489 3.59772 3.84961 3.92854 4.07476 4.09203 4.39397 4.48997 4.57067 4.62130 4.70656 4.84697 4.94725 5.06792 5.18780 5.33763 5.43051 5.47502 5.70653 5.87337 6.06558 6.39991 6.42566 6.76929 7.02344 7.86556 8.81019 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.025455 B = 0.002797 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.697007 B =10008.766067 C =10136.395734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.273 3.727 3 C -0.029 4.029 4 C -0.051 4.051 5 C 0.061 3.939 6 F -0.127 7.127 7 C 0.114 3.886 8 F -0.124 7.124 9 C -0.122 4.122 10 C 0.231 3.769 11 N -0.694 5.694 12 C 0.133 3.867 13 C -0.127 4.127 14 C -0.162 4.162 15 C 0.078 3.922 16 O -0.238 6.238 17 C -0.407 4.407 18 H 0.101 0.899 19 C -0.027 4.027 20 N -0.924 5.924 21 Si 1.016 2.984 22 H -0.250 1.250 23 H -0.272 1.272 24 H -0.268 1.268 25 C -0.201 4.201 26 C -0.121 4.121 27 H 0.179 0.821 28 H 0.180 0.820 29 H 0.427 0.573 30 H 0.140 0.860 31 H 0.113 0.887 32 H 0.270 0.730 33 H 0.122 0.878 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.320 0.314 20.306 25.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.042 4.042 3 C -0.035 4.035 4 C -0.072 4.072 5 C 0.040 3.960 6 F -0.105 7.105 7 C 0.093 3.907 8 F -0.102 7.102 9 C -0.143 4.143 10 C 0.133 3.867 11 N -0.328 5.328 12 C 0.037 3.963 13 C -0.148 4.148 14 C -0.182 4.182 15 C 0.028 3.972 16 O -0.146 6.146 17 C -0.484 4.484 18 H 0.118 0.882 19 C -0.223 4.223 20 N -0.563 5.563 21 Si 0.836 3.164 22 H -0.174 1.174 23 H -0.197 1.197 24 H -0.193 1.193 25 C -0.221 4.221 26 C -0.142 4.142 27 H 0.196 0.804 28 H 0.198 0.802 29 H 0.268 0.732 30 H 0.157 0.843 31 H 0.131 0.869 32 H 0.079 0.921 33 H 0.140 0.860 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 13.585 0.702 19.959 24.154 hybrid contribution -0.003 -0.392 -0.456 0.601 sum 13.582 0.310 19.504 23.769 Atomic orbital electron populations 1.81327 1.13467 1.08157 1.09034 1.25459 0.92511 0.93095 0.93137 1.16263 0.83992 0.97618 1.05615 1.20988 0.91066 0.98330 0.96835 1.17297 0.89887 0.85303 1.03476 1.91571 1.79755 1.53476 1.85726 1.17711 0.77469 0.94710 1.00839 1.91580 1.27989 1.96580 1.94040 1.21339 0.92628 0.99162 1.01151 1.17053 0.89545 0.87403 0.92697 1.41341 1.56718 1.13082 1.21621 1.17302 0.96539 0.95170 0.87327 1.20444 1.02296 0.98308 0.93784 1.20211 1.01396 0.98028 0.98588 1.19810 0.94740 0.95357 0.87254 1.83939 1.51586 1.46759 1.32300 1.21809 1.17285 0.99002 1.10271 0.88186 1.26535 0.99619 1.01097 0.95073 1.70208 1.40680 1.30614 1.14835 0.84559 0.76526 0.76352 0.78970 1.17376 1.19721 1.19328 1.21083 1.05125 0.98655 0.97192 1.20538 0.97742 0.99525 0.96392 0.80356 0.80243 0.73243 0.84280 0.86870 0.92062 0.86046 0.83419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -13.80 18.54 19.00 0.35 -13.45 16 2 C 0.27 6.54 13.79 88.33 1.22 7.75 16 3 C -0.03 -0.46 5.11 -21.12 -0.11 -0.57 16 4 C -0.05 -0.59 9.73 22.56 0.22 -0.37 16 5 C 0.06 0.77 7.29 22.37 0.16 0.94 16 6 F -0.13 -1.90 17.17 44.97 0.77 -1.13 16 7 C 0.11 1.44 7.30 22.46 0.16 1.60 16 8 F -0.12 -1.83 17.17 44.97 0.77 -1.06 16 9 C -0.12 -1.35 9.93 22.41 0.22 -1.13 16 10 C 0.23 3.44 4.69 38.64 0.18 3.62 16 11 N -0.69 -12.33 4.96 -179.78 -0.89 -13.22 16 12 C 0.13 3.71 5.93 38.23 0.23 3.93 16 13 C -0.13 -4.05 8.71 22.39 0.19 -3.85 16 14 C -0.16 -6.82 9.98 22.37 0.22 -6.59 16 15 C 0.08 3.87 6.65 22.59 0.15 4.02 16 16 O -0.24 -14.44 9.75 -22.89 -0.22 -14.67 16 17 C -0.41 -23.88 9.48 67.91 0.64 -23.23 16 18 H 0.10 5.36 5.20 -2.91 -0.02 5.34 16 19 C -0.03 -1.53 5.49 84.82 0.47 -1.06 16 20 N -0.92 -57.58 13.67 21.61 0.30 -57.28 16 21 Si 1.02 43.45 29.55 68.60 2.03 45.48 16 22 H -0.25 -9.82 7.11 99.48 0.71 -9.12 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 25 C -0.20 -8.47 9.16 22.37 0.20 -8.27 16 26 C -0.12 -3.82 9.89 22.39 0.22 -3.59 16 27 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 28 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 29 H 0.43 5.27 8.84 -92.70 -0.82 4.46 16 30 H 0.14 3.61 6.68 -2.91 -0.02 3.59 16 31 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 32 H 0.27 15.43 8.31 -92.70 -0.77 14.65 16 33 H 0.12 5.24 5.63 -2.91 -0.02 5.23 16 34 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -75.74 322.16 7.88 -67.86 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.39 Total: 14.28 kcal Atomic # 6 Polarization: -31.21 SS G_CDS: 4.39 Total: -26.82 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -0.24 Total: -83.95 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.22 Total: -14.67 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 1.54 Total: -2.19 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -75.74 7.88 -67.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212611492.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.154 kcal (2) G-P(sol) polarization free energy of solvation -75.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds