Wall clock time and date at job start Tue Mar 31 2020 11:26:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 O 1.45201 * 109.46824 * 2 1
4 4 C 1.34231 * 116.99826 * 180.02562 * 3 2 1
5 5 O 1.20829 * 120.00000 * 359.97438 * 4 3 2
6 6 C 1.50701 * 120.00222 * 180.02562 * 4 3 2
7 7 C 1.52994 * 109.47259 * 180.02562 * 6 4 3
8 8 H 1.08996 * 109.47449 * 54.99282 * 7 6 4
9 9 C 1.50699 * 109.47189 * 174.99787 * 7 6 4
10 10 H 1.08000 * 120.00272 * 240.00180 * 9 7 6
11 11 C 1.37877 * 120.00000 * 59.99347 * 9 7 6
12 12 N 1.31515 * 120.00132 * 0.02562 * 11 9 7
13 13 Si 1.86802 * 119.99882 * 179.97438 * 11 9 7
14 14 H 1.48500 * 109.47514 * 0.02562 * 13 11 9
15 15 H 1.48504 * 109.46924 * 120.00807 * 13 11 9
16 16 H 1.48501 * 109.47317 * 240.00218 * 13 11 9
17 17 O 1.42903 * 109.47018 * 294.99400 * 7 6 4
18 18 C 1.35980 * 116.99857 * 155.90594 * 17 7 6
19 19 C 1.38641 * 120.04918 * 5.39814 * 18 17 7
20 20 C 1.38189 * 119.98353 * 180.02562 * 19 18 17
21 21 C 1.38368 * 120.07594 * 359.97438 * 20 19 18
22 22 Cl 1.73604 * 119.94577 * 179.97438 * 21 20 19
23 23 C 1.38351 * 120.10345 * 359.97438 * 21 20 19
24 24 C 1.38335 * 120.01524 * 359.72811 * 23 21 20
25 25 F 1.35101 * 120.03850 * 180.29246 * 24 23 21
26 26 H 1.08999 * 109.46891 * 299.99939 * 1 2 3
27 27 H 1.08998 * 109.47083 * 60.00377 * 1 2 3
28 28 H 1.08996 * 109.47155 * 179.97438 * 1 2 3
29 29 H 1.09003 * 109.47370 * 239.99948 * 2 1 3
30 30 H 1.08998 * 109.47083 * 119.99623 * 2 1 3
31 31 H 1.09002 * 109.46693 * 299.99940 * 6 4 3
32 32 H 1.09000 * 109.46979 * 59.99571 * 6 4 3
33 33 H 0.97005 * 120.00406 * 179.97438 * 12 11 9
34 34 H 1.08002 * 120.01246 * 0.02686 * 19 18 17
35 35 H 1.07998 * 119.95822 * 180.02562 * 20 19 18
36 36 H 1.07997 * 119.99074 * 179.97438 * 23 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0139 1.3690 0.0000
4 6 3.3447 1.5449 -0.0005
5 8 4.0807 0.5867 -0.0005
6 6 3.9207 2.9375 0.0000
7 6 5.4486 2.8574 -0.0014
8 1 5.7798 2.2503 -0.8439
9 6 6.0242 4.2447 -0.1248
10 1 6.6582 4.4937 -0.9628
11 6 5.7413 5.1960 0.8323
12 7 4.9695 4.8927 1.8530
13 14 6.4554 6.9154 0.6797
14 1 7.2848 6.9998 -0.5491
15 1 5.3508 7.9048 0.5999
16 1 7.2977 7.2088 1.8670
17 8 5.8955 2.2631 1.2189
18 6 7.1142 1.6600 1.2017
19 6 7.9111 1.7374 0.0699
20 6 9.1491 1.1236 0.0537
21 6 9.5948 0.4321 1.1662
22 17 11.1504 -0.3383 1.1420
23 6 8.8028 0.3537 2.2979
24 6 7.5654 0.9718 2.3206
25 9 6.7941 0.9005 3.4275
26 1 -0.3633 0.5138 0.8900
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3633 -1.0276 -0.0005
29 1 1.8934 -0.5138 -0.8900
30 1 1.8933 -0.5138 0.8900
31 1 3.5843 3.4701 -0.8895
32 1 3.5851 3.4691 0.8904
33 1 4.7707 5.5619 2.5266
34 1 7.5646 2.2772 -0.7990
35 1 9.7698 1.1844 -0.8280
36 1 9.1523 -0.1869 3.1650
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001225713370.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:26:51
Heat of formation + Delta-G solvation = -159.012533 kcal
Electronic energy + Delta-G solvation = -24420.759856 eV
Core-core repulsion = 20424.811402 eV
Total energy + Delta-G solvation = -3995.948454 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 316.071 amu
Computer time = 0.55 seconds
Orbital eigenvalues (eV)
-48.11810 -39.91062 -39.08832 -37.16688 -36.09048 -35.64785 -33.32961 -31.63548
-30.57297 -30.25544 -28.60659 -26.46819 -23.52231 -22.88461 -21.97158 -21.38081
-19.87241 -18.00042 -17.29437 -16.80581 -16.32740 -16.12575 -15.79013 -15.59810
-15.08162 -14.86570 -14.64789 -14.03330 -13.77808 -13.49234 -13.41802 -12.81652
-12.76826 -12.57464 -12.43040 -12.16736 -11.83787 -11.67899 -11.40129 -11.30163
-11.13850 -11.06142 -10.83413 -10.77703 -10.60069 -10.36563 -10.18018 -9.79691
-9.55746 -9.27187 -8.85911 -8.48478 -7.26315 -6.34079 -4.56634 1.58116
1.73206 2.43792 2.94814 3.11817 3.22642 3.25068 3.27667 4.05034
4.15893 4.21180 4.85401 5.03223 5.06331 5.12513 5.21527 5.34890
5.38721 5.44092 5.63653 5.86343 5.87756 5.94974 6.04379 6.13884
6.21712 6.30656 6.42650 6.53080 6.68635 6.77676 6.93047 7.16073
7.21284 7.55317 7.73101 8.32043 8.45270 8.66319 9.22125 10.67002
Molecular weight = 316.07amu
Principal moments of inertia in cm(-1)
A = 0.009419 B = 0.005419 C = 0.003857
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2972.103667 B = 5166.099630 C = 7258.014729
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.059 3.941
3 O -0.366 6.366
4 C 0.456 3.544
5 O -0.515 6.515
6 C -0.101 4.101
7 C 0.221 3.779
8 H 0.036 0.964
9 C -0.565 4.565
10 H 0.072 0.928
11 C 0.086 3.914
12 N -0.854 5.854
13 Si 0.897 3.103
14 H -0.269 1.269
15 H -0.279 1.279
16 H -0.280 1.280
17 O -0.275 6.275
18 C 0.166 3.834
19 C -0.171 4.171
20 C -0.080 4.080
21 C -0.076 4.076
22 Cl -0.086 7.086
23 C -0.112 4.112
24 C 0.052 3.948
25 F -0.133 7.133
26 H 0.065 0.935
27 H 0.064 0.936
28 H 0.073 0.927
29 H 0.063 0.937
30 H 0.065 0.935
31 H 0.105 0.895
32 H 0.141 0.859
33 H 0.269 0.731
34 H 0.151 0.849
35 H 0.131 0.869
36 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.485 -6.781 -3.046 7.450
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.015 4.015
3 O -0.284 6.284
4 C 0.301 3.699
5 O -0.403 6.403
6 C -0.138 4.138
7 C 0.167 3.833
8 H 0.054 0.946
9 C -0.602 4.602
10 H 0.090 0.910
11 C -0.122 4.122
12 N -0.488 5.488
13 Si 0.724 3.276
14 H -0.193 1.193
15 H -0.205 1.205
16 H -0.206 1.206
17 O -0.185 6.185
18 C 0.115 3.885
19 C -0.190 4.190
20 C -0.099 4.099
21 C -0.102 4.102
22 Cl -0.058 7.058
23 C -0.132 4.132
24 C 0.032 3.968
25 F -0.112 7.112
26 H 0.084 0.916
27 H 0.083 0.917
28 H 0.092 0.908
29 H 0.082 0.918
30 H 0.083 0.917
31 H 0.123 0.877
32 H 0.159 0.841
33 H 0.079 0.921
34 H 0.169 0.831
35 H 0.149 0.851
36 H 0.156 0.844
Dipole moment (debyes) X Y Z Total
from point charges -0.455 -7.062 -2.685 7.569
hybrid contribution 0.436 0.731 0.125 0.860
sum -0.019 -6.331 -2.560 6.829
Atomic orbital electron populations
1.21778 0.93255 1.02366 1.03336 1.22869 0.94885 0.81679 1.02091
1.86569 1.26026 1.31085 1.84680 1.24858 0.79592 0.94246 0.71210
1.90599 1.60230 1.43633 1.45846 1.21815 0.96236 0.88317 1.07460
1.19937 0.89066 0.92704 0.81601 0.94571 1.21434 1.33383 0.94733
1.10652 0.90998 1.25070 0.93652 0.99204 0.94313 1.69867 1.33839
1.34580 1.10546 0.86448 0.79231 0.83334 0.78601 1.19331 1.20489
1.20563 1.86350 1.27523 1.65053 1.39592 1.19118 0.87946 0.89496
0.91971 1.21246 0.94490 1.03807 0.99487 1.20808 0.95942 0.96175
0.96968 1.20149 0.88640 1.04938 0.96505 1.98314 1.27999 1.80676
1.98764 1.20562 0.92524 1.01485 0.98638 1.16782 0.91140 1.05056
0.83871 1.91468 1.74360 1.95044 1.50282 0.91570 0.91711 0.90806
0.91846 0.91678 0.87661 0.84112 0.92053 0.83107 0.85111 0.84366
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.60 10.29 37.16 0.38 -1.22 16
2 C 0.06 0.85 6.19 37.16 0.23 1.08 16
3 O -0.37 -6.60 10.22 -39.26 -0.40 -7.00 16
4 C 0.46 9.43 7.84 36.01 0.28 9.71 16
5 O -0.52 -11.70 15.17 -24.06 -0.36 -12.06 16
6 C -0.10 -2.16 5.22 -27.89 -0.15 -2.30 16
7 C 0.22 5.09 1.35 -27.89 -0.04 5.06 16
8 H 0.04 0.81 6.18 -51.93 -0.32 0.49 16
9 C -0.57 -13.63 7.92 -34.44 -0.27 -13.90 16
10 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16
11 C 0.09 2.12 5.24 -17.82 -0.09 2.03 16
12 N -0.85 -22.01 10.93 55.43 0.61 -21.41 16
13 Si 0.90 19.34 29.54 -169.99 -5.02 14.32 16
14 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16
15 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16
16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16
17 O -0.27 -6.82 8.29 -34.15 -0.28 -7.10 16
18 C 0.17 3.71 6.59 -39.19 -0.26 3.45 16
19 C -0.17 -3.35 8.69 -39.45 -0.34 -3.69 16
20 C -0.08 -1.34 9.82 -39.55 -0.39 -1.73 16
21 C -0.08 -1.25 6.32 -39.49 -0.25 -1.50 16
22 Cl -0.09 -1.21 28.95 -51.86 -1.50 -2.71 16
23 C -0.11 -1.98 9.80 -39.50 -0.39 -2.37 16
24 C 0.05 1.09 7.31 -39.30 -0.29 0.80 16
25 F -0.13 -2.95 17.11 2.25 0.04 -2.91 16
26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16
28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
29 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16
30 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16
31 H 0.11 2.01 8.14 -51.93 -0.42 1.59 16
32 H 0.14 3.31 6.22 -51.93 -0.32 2.99 16
33 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16
34 H 0.15 2.91 5.67 -52.49 -0.30 2.61 16
35 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16
36 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16
LS Contribution 333.27 15.07 5.02 5.02
Total: -1.00 -27.71 333.27 -7.34 -35.05
By element:
Atomic # 1 Polarization: 7.26 SS G_CDS: -3.87 Total: 3.39 kcal
Atomic # 6 Polarization: -3.01 SS G_CDS: -1.57 Total: -4.58 kcal
Atomic # 7 Polarization: -22.01 SS G_CDS: 0.61 Total: -21.41 kcal
Atomic # 8 Polarization: -25.12 SS G_CDS: -1.05 Total: -26.17 kcal
Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal
Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal
Atomic # 17 Polarization: -1.21 SS G_CDS: -1.50 Total: -2.71 kcal
Total LS contribution 5.02 Total: 5.02 kcal
Total: -27.71 -7.34 -35.05 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001225713370.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -123.959 kcal
(2) G-P(sol) polarization free energy of solvation -27.712 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.671 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.054 kcal
(6) G-S(sol) free energy of system = (1) + (5) -159.013 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds