Wall clock time and date at job start Tue Mar 31 2020 11:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45201 * 109.46824 * 2 1 4 4 C 1.34231 * 116.99826 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00000 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00222 * 180.02562 * 4 3 2 7 7 C 1.52994 * 109.47259 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.47449 * 54.99282 * 7 6 4 9 9 C 1.50699 * 109.47189 * 174.99787 * 7 6 4 10 10 H 1.08000 * 120.00272 * 240.00180 * 9 7 6 11 11 C 1.37877 * 120.00000 * 59.99347 * 9 7 6 12 12 N 1.31515 * 120.00132 * 0.02562 * 11 9 7 13 13 Si 1.86802 * 119.99882 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47514 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46924 * 120.00807 * 13 11 9 16 16 H 1.48501 * 109.47317 * 240.00218 * 13 11 9 17 17 O 1.42903 * 109.47018 * 294.99400 * 7 6 4 18 18 C 1.35980 * 116.99857 * 155.90594 * 17 7 6 19 19 C 1.38641 * 120.04918 * 5.39814 * 18 17 7 20 20 C 1.38189 * 119.98353 * 180.02562 * 19 18 17 21 21 C 1.38368 * 120.07594 * 359.97438 * 20 19 18 22 22 Cl 1.73604 * 119.94577 * 179.97438 * 21 20 19 23 23 C 1.38351 * 120.10345 * 359.97438 * 21 20 19 24 24 C 1.38335 * 120.01524 * 359.72811 * 23 21 20 25 25 F 1.35101 * 120.03850 * 180.29246 * 24 23 21 26 26 H 1.08999 * 109.46891 * 299.99939 * 1 2 3 27 27 H 1.08998 * 109.47083 * 60.00377 * 1 2 3 28 28 H 1.08996 * 109.47155 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47370 * 239.99948 * 2 1 3 30 30 H 1.08998 * 109.47083 * 119.99623 * 2 1 3 31 31 H 1.09002 * 109.46693 * 299.99940 * 6 4 3 32 32 H 1.09000 * 109.46979 * 59.99571 * 6 4 3 33 33 H 0.97005 * 120.00406 * 179.97438 * 12 11 9 34 34 H 1.08002 * 120.01246 * 0.02686 * 19 18 17 35 35 H 1.07998 * 119.95822 * 180.02562 * 20 19 18 36 36 H 1.07997 * 119.99074 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 6 5.4486 2.8574 -0.0014 8 1 5.7798 2.2503 -0.8439 9 6 6.0242 4.2447 -0.1248 10 1 6.6582 4.4937 -0.9628 11 6 5.7413 5.1960 0.8323 12 7 4.9695 4.8927 1.8530 13 14 6.4554 6.9154 0.6797 14 1 7.2848 6.9998 -0.5491 15 1 5.3508 7.9048 0.5999 16 1 7.2977 7.2088 1.8670 17 8 5.8955 2.2631 1.2189 18 6 7.1142 1.6600 1.2017 19 6 7.9111 1.7374 0.0699 20 6 9.1491 1.1236 0.0537 21 6 9.5948 0.4321 1.1662 22 17 11.1504 -0.3383 1.1420 23 6 8.8028 0.3537 2.2979 24 6 7.5654 0.9718 2.3206 25 9 6.7941 0.9005 3.4275 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.5843 3.4701 -0.8895 32 1 3.5851 3.4691 0.8904 33 1 4.7707 5.5619 2.5266 34 1 7.5646 2.2772 -0.7990 35 1 9.7698 1.1844 -0.8280 36 1 9.1523 -0.1869 3.1650 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225713370.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:51 Heat of formation + Delta-G solvation = -159.012533 kcal Electronic energy + Delta-G solvation = -24420.759856 eV Core-core repulsion = 20424.811402 eV Total energy + Delta-G solvation = -3995.948454 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.071 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.11810 -39.91062 -39.08832 -37.16688 -36.09048 -35.64785 -33.32961 -31.63548 -30.57297 -30.25544 -28.60659 -26.46819 -23.52231 -22.88461 -21.97158 -21.38081 -19.87241 -18.00042 -17.29437 -16.80581 -16.32740 -16.12575 -15.79013 -15.59810 -15.08162 -14.86570 -14.64789 -14.03330 -13.77808 -13.49234 -13.41802 -12.81652 -12.76826 -12.57464 -12.43040 -12.16736 -11.83787 -11.67899 -11.40129 -11.30163 -11.13850 -11.06142 -10.83413 -10.77703 -10.60069 -10.36563 -10.18018 -9.79691 -9.55746 -9.27187 -8.85911 -8.48478 -7.26315 -6.34079 -4.56634 1.58116 1.73206 2.43792 2.94814 3.11817 3.22642 3.25068 3.27667 4.05034 4.15893 4.21180 4.85401 5.03223 5.06331 5.12513 5.21527 5.34890 5.38721 5.44092 5.63653 5.86343 5.87756 5.94974 6.04379 6.13884 6.21712 6.30656 6.42650 6.53080 6.68635 6.77676 6.93047 7.16073 7.21284 7.55317 7.73101 8.32043 8.45270 8.66319 9.22125 10.67002 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.009419 B = 0.005419 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2972.103667 B = 5166.099630 C = 7258.014729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.456 3.544 5 O -0.515 6.515 6 C -0.101 4.101 7 C 0.221 3.779 8 H 0.036 0.964 9 C -0.565 4.565 10 H 0.072 0.928 11 C 0.086 3.914 12 N -0.854 5.854 13 Si 0.897 3.103 14 H -0.269 1.269 15 H -0.279 1.279 16 H -0.280 1.280 17 O -0.275 6.275 18 C 0.166 3.834 19 C -0.171 4.171 20 C -0.080 4.080 21 C -0.076 4.076 22 Cl -0.086 7.086 23 C -0.112 4.112 24 C 0.052 3.948 25 F -0.133 7.133 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.141 0.859 33 H 0.269 0.731 34 H 0.151 0.849 35 H 0.131 0.869 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.485 -6.781 -3.046 7.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.301 3.699 5 O -0.403 6.403 6 C -0.138 4.138 7 C 0.167 3.833 8 H 0.054 0.946 9 C -0.602 4.602 10 H 0.090 0.910 11 C -0.122 4.122 12 N -0.488 5.488 13 Si 0.724 3.276 14 H -0.193 1.193 15 H -0.205 1.205 16 H -0.206 1.206 17 O -0.185 6.185 18 C 0.115 3.885 19 C -0.190 4.190 20 C -0.099 4.099 21 C -0.102 4.102 22 Cl -0.058 7.058 23 C -0.132 4.132 24 C 0.032 3.968 25 F -0.112 7.112 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.159 0.841 33 H 0.079 0.921 34 H 0.169 0.831 35 H 0.149 0.851 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.455 -7.062 -2.685 7.569 hybrid contribution 0.436 0.731 0.125 0.860 sum -0.019 -6.331 -2.560 6.829 Atomic orbital electron populations 1.21778 0.93255 1.02366 1.03336 1.22869 0.94885 0.81679 1.02091 1.86569 1.26026 1.31085 1.84680 1.24858 0.79592 0.94246 0.71210 1.90599 1.60230 1.43633 1.45846 1.21815 0.96236 0.88317 1.07460 1.19937 0.89066 0.92704 0.81601 0.94571 1.21434 1.33383 0.94733 1.10652 0.90998 1.25070 0.93652 0.99204 0.94313 1.69867 1.33839 1.34580 1.10546 0.86448 0.79231 0.83334 0.78601 1.19331 1.20489 1.20563 1.86350 1.27523 1.65053 1.39592 1.19118 0.87946 0.89496 0.91971 1.21246 0.94490 1.03807 0.99487 1.20808 0.95942 0.96175 0.96968 1.20149 0.88640 1.04938 0.96505 1.98314 1.27999 1.80676 1.98764 1.20562 0.92524 1.01485 0.98638 1.16782 0.91140 1.05056 0.83871 1.91468 1.74360 1.95044 1.50282 0.91570 0.91711 0.90806 0.91846 0.91678 0.87661 0.84112 0.92053 0.83107 0.85111 0.84366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.29 37.16 0.38 -1.22 16 2 C 0.06 0.85 6.19 37.16 0.23 1.08 16 3 O -0.37 -6.60 10.22 -39.26 -0.40 -7.00 16 4 C 0.46 9.43 7.84 36.01 0.28 9.71 16 5 O -0.52 -11.70 15.17 -24.06 -0.36 -12.06 16 6 C -0.10 -2.16 5.22 -27.89 -0.15 -2.30 16 7 C 0.22 5.09 1.35 -27.89 -0.04 5.06 16 8 H 0.04 0.81 6.18 -51.93 -0.32 0.49 16 9 C -0.57 -13.63 7.92 -34.44 -0.27 -13.90 16 10 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 11 C 0.09 2.12 5.24 -17.82 -0.09 2.03 16 12 N -0.85 -22.01 10.93 55.43 0.61 -21.41 16 13 Si 0.90 19.34 29.54 -169.99 -5.02 14.32 16 14 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 15 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 16 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 17 O -0.27 -6.82 8.29 -34.15 -0.28 -7.10 16 18 C 0.17 3.71 6.59 -39.19 -0.26 3.45 16 19 C -0.17 -3.35 8.69 -39.45 -0.34 -3.69 16 20 C -0.08 -1.34 9.82 -39.55 -0.39 -1.73 16 21 C -0.08 -1.25 6.32 -39.49 -0.25 -1.50 16 22 Cl -0.09 -1.21 28.95 -51.86 -1.50 -2.71 16 23 C -0.11 -1.98 9.80 -39.50 -0.39 -2.37 16 24 C 0.05 1.09 7.31 -39.30 -0.29 0.80 16 25 F -0.13 -2.95 17.11 2.25 0.04 -2.91 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 30 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 31 H 0.11 2.01 8.14 -51.93 -0.42 1.59 16 32 H 0.14 3.31 6.22 -51.93 -0.32 2.99 16 33 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 34 H 0.15 2.91 5.67 -52.49 -0.30 2.61 16 35 H 0.13 1.83 8.06 -52.49 -0.42 1.40 16 36 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 333.27 15.07 5.02 5.02 Total: -1.00 -27.71 333.27 -7.34 -35.05 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -3.87 Total: 3.39 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -1.57 Total: -4.58 kcal Atomic # 7 Polarization: -22.01 SS G_CDS: 0.61 Total: -21.41 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -1.05 Total: -26.17 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.04 Total: -2.91 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -1.50 Total: -2.71 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.71 -7.34 -35.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225713370.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.959 kcal (2) G-P(sol) polarization free energy of solvation -27.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds