Wall clock time and date at job start Tue Mar 31 2020 11:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45201 * 109.46824 * 2 1 4 4 C 1.34231 * 116.99826 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00000 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00222 * 180.02562 * 4 3 2 7 7 C 1.52994 * 109.47259 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.47449 * 54.99282 * 7 6 4 9 9 C 1.50699 * 109.47189 * 174.99787 * 7 6 4 10 10 H 1.08000 * 120.00272 * 240.00180 * 9 7 6 11 11 C 1.37877 * 120.00000 * 59.99347 * 9 7 6 12 12 N 1.31515 * 120.00132 * 0.02562 * 11 9 7 13 13 Si 1.86802 * 119.99882 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47514 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46924 * 120.00807 * 13 11 9 16 16 H 1.48501 * 109.47317 * 240.00218 * 13 11 9 17 17 O 1.42903 * 109.47018 * 294.99400 * 7 6 4 18 18 C 1.35980 * 116.99857 * 155.90594 * 17 7 6 19 19 C 1.38641 * 120.04918 * 5.39814 * 18 17 7 20 20 C 1.38189 * 119.98353 * 180.02562 * 19 18 17 21 21 C 1.38368 * 120.07594 * 359.97438 * 20 19 18 22 22 Cl 1.73604 * 119.94577 * 179.97438 * 21 20 19 23 23 C 1.38351 * 120.10345 * 359.97438 * 21 20 19 24 24 C 1.38335 * 120.01524 * 359.72811 * 23 21 20 25 25 F 1.35101 * 120.03850 * 180.29246 * 24 23 21 26 26 H 1.08999 * 109.46891 * 299.99939 * 1 2 3 27 27 H 1.08998 * 109.47083 * 60.00377 * 1 2 3 28 28 H 1.08996 * 109.47155 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47370 * 239.99948 * 2 1 3 30 30 H 1.08998 * 109.47083 * 119.99623 * 2 1 3 31 31 H 1.09002 * 109.46693 * 299.99940 * 6 4 3 32 32 H 1.09000 * 109.46979 * 59.99571 * 6 4 3 33 33 H 0.97005 * 120.00406 * 179.97438 * 12 11 9 34 34 H 1.08002 * 120.01246 * 0.02686 * 19 18 17 35 35 H 1.07998 * 119.95822 * 180.02562 * 20 19 18 36 36 H 1.07997 * 119.99074 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 6 5.4486 2.8574 -0.0014 8 1 5.7798 2.2503 -0.8439 9 6 6.0242 4.2447 -0.1248 10 1 6.6582 4.4937 -0.9628 11 6 5.7413 5.1960 0.8323 12 7 4.9695 4.8927 1.8530 13 14 6.4554 6.9154 0.6797 14 1 7.2848 6.9998 -0.5491 15 1 5.3508 7.9048 0.5999 16 1 7.2977 7.2088 1.8670 17 8 5.8955 2.2631 1.2189 18 6 7.1142 1.6600 1.2017 19 6 7.9111 1.7374 0.0699 20 6 9.1491 1.1236 0.0537 21 6 9.5948 0.4321 1.1662 22 17 11.1504 -0.3383 1.1420 23 6 8.8028 0.3537 2.2979 24 6 7.5654 0.9718 2.3206 25 9 6.7941 0.9005 3.4275 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.5843 3.4701 -0.8895 32 1 3.5851 3.4691 0.8904 33 1 4.7707 5.5619 2.5266 34 1 7.5646 2.2772 -0.7990 35 1 9.7698 1.1844 -0.8280 36 1 9.1523 -0.1869 3.1650 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225713370.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:51 Heat of formation + Delta-G solvation = -171.808408 kcal Electronic energy + Delta-G solvation = -24421.314727 eV Core-core repulsion = 20424.811402 eV Total energy + Delta-G solvation = -3996.503324 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.071 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.76863 -41.50401 -40.64216 -38.68004 -37.55306 -37.07031 -35.12423 -32.92833 -32.12363 -31.72327 -30.14129 -28.23334 -25.09465 -24.17295 -23.45103 -22.89819 -21.49316 -19.65068 -18.92446 -18.39581 -17.89970 -17.62456 -17.36632 -17.24722 -16.70430 -16.48161 -16.16551 -15.55219 -15.21559 -15.12254 -14.94591 -14.24536 -14.13613 -13.94782 -13.75130 -13.64916 -13.31853 -13.03294 -12.95801 -12.86731 -12.66611 -12.49993 -12.43345 -12.30378 -11.93275 -11.89420 -11.51492 -11.47040 -11.27700 -10.96157 -10.71729 -9.95391 -8.85301 -8.18874 -6.46774 0.10455 0.24837 1.10418 1.30405 1.41553 1.46962 1.56094 1.83197 2.37654 2.55821 2.58068 3.17611 3.36875 3.78498 3.94258 4.00074 4.02790 4.12497 4.15792 4.34142 4.43871 4.50803 4.54264 4.70802 4.84638 4.90433 4.92564 5.04340 5.12985 5.16964 5.23924 5.38952 5.52060 5.63670 5.72189 5.91590 6.52140 6.84928 6.92307 7.34890 8.81426 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.009419 B = 0.005419 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2972.103667 B = 5166.099630 C = 7258.014729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 O -0.367 6.367 4 C 0.462 3.538 5 O -0.539 6.539 6 C -0.098 4.098 7 C 0.220 3.780 8 H 0.037 0.963 9 C -0.570 4.570 10 H 0.075 0.925 11 C 0.045 3.955 12 N -0.883 5.883 13 Si 0.954 3.046 14 H -0.261 1.261 15 H -0.273 1.273 16 H -0.290 1.290 17 O -0.305 6.305 18 C 0.127 3.873 19 C -0.177 4.177 20 C -0.068 4.068 21 C -0.069 4.069 22 Cl -0.053 7.053 23 C -0.101 4.101 24 C 0.023 3.977 25 F -0.149 7.149 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.267 0.733 34 H 0.149 0.851 35 H 0.165 0.835 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.605 -7.421 -4.064 8.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 O -0.284 6.284 4 C 0.308 3.692 5 O -0.430 6.430 6 C -0.136 4.136 7 C 0.166 3.834 8 H 0.055 0.945 9 C -0.607 4.607 10 H 0.093 0.907 11 C -0.160 4.160 12 N -0.519 5.519 13 Si 0.779 3.221 14 H -0.185 1.185 15 H -0.199 1.199 16 H -0.216 1.216 17 O -0.217 6.217 18 C 0.078 3.922 19 C -0.196 4.196 20 C -0.086 4.086 21 C -0.096 4.096 22 Cl -0.025 7.025 23 C -0.121 4.121 24 C 0.003 3.997 25 F -0.128 7.128 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.122 0.878 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.077 0.923 34 H 0.166 0.834 35 H 0.183 0.817 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.629 -7.709 -3.720 8.583 hybrid contribution 0.197 0.771 0.418 0.899 sum 0.826 -6.939 -3.302 7.728 Atomic orbital electron populations 1.21806 0.89922 1.04437 1.03701 1.23275 0.97465 0.79709 1.02039 1.86546 1.24323 1.33509 1.84016 1.24600 0.80374 0.93572 0.70685 1.90578 1.61034 1.44222 1.47117 1.21687 0.95705 0.88945 1.07217 1.19941 0.89818 0.92215 0.81438 0.94529 1.21656 1.33138 0.95350 1.10528 0.90728 1.25715 0.93991 1.02202 0.94099 1.70000 1.35211 1.35385 1.11287 0.85573 0.78554 0.79778 0.78186 1.18482 1.19867 1.21593 1.86285 1.29041 1.66198 1.40140 1.19554 0.88008 0.91028 0.93645 1.21304 0.95379 1.04358 0.98574 1.21138 0.94912 0.94429 0.98142 1.20290 0.89634 1.03877 0.95798 1.98333 1.25524 1.79938 1.98674 1.20811 0.91067 1.00292 0.99890 1.17171 0.92466 1.06648 0.83451 1.91414 1.75070 1.95323 1.50962 0.91637 0.90899 0.87831 0.91257 0.92484 0.85864 0.86258 0.92328 0.83351 0.81722 0.81851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 10.29 71.98 0.74 -2.02 16 2 C 0.05 1.38 6.19 71.98 0.45 1.83 16 3 O -0.37 -13.32 10.22 -51.43 -0.53 -13.85 16 4 C 0.46 19.58 7.84 71.24 0.56 20.14 16 5 O -0.54 -25.17 15.17 27.03 0.41 -24.76 16 6 C -0.10 -4.32 5.22 29.85 0.16 -4.17 16 7 C 0.22 10.43 1.35 29.85 0.04 10.47 16 8 H 0.04 1.68 6.18 -2.39 -0.01 1.67 16 9 C -0.57 -27.85 7.92 25.60 0.20 -27.65 16 10 H 0.07 3.50 7.81 -2.91 -0.02 3.48 16 11 C 0.05 2.25 5.24 84.65 0.44 2.70 16 12 N -0.88 -46.89 10.93 21.45 0.23 -46.66 16 13 Si 0.95 39.88 29.54 68.60 2.03 41.91 16 14 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 15 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 16 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 17 O -0.30 -15.73 8.29 -79.49 -0.66 -16.39 16 18 C 0.13 5.84 6.59 22.52 0.15 5.99 16 19 C -0.18 -6.89 8.69 22.35 0.19 -6.70 16 20 C -0.07 -2.12 9.82 22.29 0.22 -1.90 16 21 C -0.07 -2.11 6.32 22.33 0.14 -1.97 16 22 Cl -0.05 -1.32 28.95 -2.72 -0.08 -1.40 16 23 C -0.10 -3.42 9.80 22.32 0.22 -3.21 16 24 C 0.02 0.97 7.31 22.45 0.16 1.13 16 25 F -0.15 -6.85 17.11 44.97 0.77 -6.08 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 1.88 8.13 -2.39 -0.02 1.86 16 30 H 0.06 1.71 8.13 -2.39 -0.02 1.69 16 31 H 0.12 4.80 8.14 -2.39 -0.02 4.78 16 32 H 0.12 5.86 6.22 -2.39 -0.01 5.85 16 33 H 0.27 13.59 8.31 -92.70 -0.77 12.82 16 34 H 0.15 5.75 5.67 -2.91 -0.02 5.73 16 35 H 0.17 3.99 8.06 -2.91 -0.02 3.97 16 36 H 0.16 4.58 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -61.03 333.27 6.97 -54.07 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 1.12 Total: 18.51 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 3.67 Total: -5.35 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: 0.23 Total: -46.66 kcal Atomic # 8 Polarization: -54.22 SS G_CDS: -0.77 Total: -54.99 kcal Atomic # 9 Polarization: -6.85 SS G_CDS: 0.77 Total: -6.08 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -61.03 6.97 -54.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225713370.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.741 kcal (2) G-P(sol) polarization free energy of solvation -61.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds