Wall clock time and date at job start Tue Mar 31 2020 11:25:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.36036 * 117.00276 * 2 1
4 4 C 1.37897 * 119.94906 * 0.02562 * 3 2 1
5 5 C 1.40158 * 119.84565 * 179.97438 * 4 3 2
6 6 C 1.46662 * 120.12234 * 179.97438 * 5 4 3
7 7 C 1.50705 * 120.00116 * 0.02732 * 6 5 4
8 8 O 1.21325 * 120.00008 * 180.02562 * 6 5 4
9 9 C 1.40268 * 119.75595 * 0.02562 * 5 4 3
10 10 F 1.35099 * 120.05097 * 179.97438 * 9 5 4
11 11 C 1.38007 * 119.90101 * 0.24779 * 9 5 4
12 12 C 1.38791 * 120.14698 * 359.47377 * 11 9 5
13 13 O 1.35748 * 119.87346 * 180.27628 * 12 11 9
14 14 C 1.42894 * 117.00332 * 356.74335 * 13 12 11
15 15 H 1.09007 * 109.46875 * 27.12953 * 14 13 12
16 16 C 1.50701 * 109.47098 * 147.12771 * 14 13 12
17 17 H 1.08003 * 120.00371 * 0.02562 * 16 14 13
18 18 C 1.37881 * 120.00201 * 180.02562 * 16 14 13
19 19 N 1.31514 * 119.99476 * 359.97438 * 18 16 14
20 20 Si 1.86799 * 120.00216 * 180.02562 * 18 16 14
21 21 H 1.48489 * 109.47145 * 89.99781 * 20 18 16
22 22 H 1.48496 * 109.46919 * 209.99869 * 20 18 16
23 23 H 1.48502 * 109.46780 * 329.99821 * 20 18 16
24 24 C 1.52998 * 109.47574 * 267.12904 * 14 13 12
25 25 Cl 1.80299 * 109.46937 * 64.99836 * 24 14 13
26 26 H 1.09006 * 109.46934 * 300.00344 * 1 2 3
27 27 H 1.09008 * 109.46765 * 59.99791 * 1 2 3
28 28 H 1.08997 * 109.47468 * 180.02562 * 1 2 3
29 29 H 1.07998 * 120.07802 * 0.02562 * 4 3 2
30 30 H 1.09004 * 109.46951 * 90.00080 * 7 6 5
31 31 H 1.09003 * 109.46958 * 209.99821 * 7 6 5
32 32 H 1.08995 * 109.46792 * 329.99970 * 7 6 5
33 33 H 1.07998 * 119.92376 * 179.72740 * 11 9 5
34 34 H 0.97001 * 119.99852 * 179.97438 * 19 18 16
35 35 H 1.09001 * 109.46975 * 184.99951 * 24 14 13
36 36 H 1.08998 * 109.47055 * 305.00217 * 24 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0466 1.2121 0.0000
4 6 1.2946 2.3679 0.0005
5 6 1.9332 3.6156 0.0011
6 6 1.1394 4.8488 0.0011
7 6 -0.3659 4.7759 0.0011
8 8 1.6945 5.9276 0.0011
9 6 3.3344 3.6804 0.0005
10 9 3.9562 4.8798 0.0005
11 6 4.0770 2.5171 -0.0057
12 6 3.4404 1.2838 -0.0004
13 8 4.1763 0.1431 -0.0009
14 6 5.5958 0.2868 -0.0794
15 1 5.8875 1.2483 0.3433
16 6 6.2567 -0.8239 0.6957
17 1 5.6531 -1.5656 1.1976
18 6 7.6321 -0.8932 0.7640
19 7 8.3671 0.0097 0.1524
20 14 8.4513 -2.2704 1.7241
21 1 8.6857 -3.4289 0.8254
22 1 9.7493 -1.7927 2.2647
23 1 7.5701 -2.6841 2.8455
24 6 6.0353 0.2188 -1.5433
25 17 5.3627 1.6316 -2.4390
26 1 -0.3633 0.5139 0.8900
27 1 -0.3633 0.5139 -0.8901
28 1 -0.3634 -1.0276 0.0005
29 1 0.2161 2.3120 0.0014
30 1 -0.7288 4.7584 1.0288
31 1 -0.7718 5.6473 -0.5127
32 1 -0.6857 3.8694 -0.5127
33 1 5.1558 2.5667 -0.0106
34 1 9.3347 -0.0388 0.2008
35 1 7.1238 0.2391 -1.5972
36 1 5.6665 -0.7042 -1.9908
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001230269278.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:25:12
Heat of formation + Delta-G solvation = -139.135530 kcal
Electronic energy + Delta-G solvation = -24575.049678 eV
Core-core repulsion = 20579.963156 eV
Total energy + Delta-G solvation = -3995.086522 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 316.071 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-48.51993 -40.36144 -38.99564 -38.27646 -36.16351 -34.95515 -33.57501 -31.56582
-30.12074 -29.28444 -28.67080 -27.17824 -25.43783 -23.74333 -22.46892 -21.02373
-19.93907 -18.31997 -17.34954 -17.27989 -16.45509 -16.07819 -15.86100 -15.33292
-15.26002 -14.79824 -14.67745 -14.62070 -14.43015 -14.17302 -13.83252 -13.37948
-13.04557 -12.68008 -12.33249 -12.22168 -12.17826 -11.94556 -11.76810 -11.52740
-11.37371 -11.21818 -11.09220 -10.82893 -10.66128 -10.36731 -9.85947 -9.63170
-9.53012 -9.33954 -8.78206 -8.33258 -7.46007 -6.51729 -4.60265 0.79511
1.41735 2.54429 3.08313 3.16927 3.20583 3.29385 3.37550 3.74540
3.81684 4.09222 4.20278 4.43764 4.80128 4.84315 4.96085 5.04499
5.15851 5.23281 5.29702 5.34934 5.41138 5.48365 5.74767 5.78159
5.97645 6.06989 6.11640 6.27473 6.32183 6.62088 6.81422 7.01501
7.34713 7.48742 7.62705 7.63115 8.08164 8.54207 9.07844 10.55470
Molecular weight = 316.07amu
Principal moments of inertia in cm(-1)
A = 0.016189 B = 0.004552 C = 0.004090
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1729.143088 B = 6149.099090 C = 6843.931386
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.025 3.975
2 O -0.299 6.299
3 C 0.061 3.939
4 C -0.109 4.109
5 C -0.238 4.238
6 C 0.397 3.603
7 C -0.196 4.196
8 O -0.459 6.459
9 C 0.172 3.828
10 F -0.120 7.120
11 C -0.223 4.223
12 C 0.204 3.796
13 O -0.283 6.283
14 C 0.200 3.800
15 H 0.054 0.946
16 C -0.524 4.524
17 H 0.079 0.921
18 C 0.065 3.935
19 N -0.887 5.887
20 Si 0.919 3.081
21 H -0.275 1.275
22 H -0.282 1.282
23 H -0.269 1.269
24 C -0.038 4.038
25 Cl -0.240 7.240
26 H 0.052 0.948
27 H 0.052 0.948
28 H 0.099 0.901
29 H 0.146 0.854
30 H 0.095 0.905
31 H 0.085 0.915
32 H 0.083 0.917
33 H 0.164 0.836
34 H 0.274 0.726
35 H 0.137 0.863
36 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.248 1.930 -0.795 14.400
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.212 6.212
3 C 0.015 3.985
4 C -0.128 4.128
5 C -0.240 4.240
6 C 0.276 3.724
7 C -0.253 4.253
8 O -0.336 6.336
9 C 0.152 3.848
10 F -0.098 7.098
11 C -0.243 4.243
12 C 0.154 3.846
13 O -0.195 6.195
14 C 0.146 3.854
15 H 0.072 0.928
16 C -0.561 4.561
17 H 0.097 0.903
18 C -0.139 4.139
19 N -0.524 5.524
20 Si 0.745 3.255
21 H -0.201 1.201
22 H -0.207 1.207
23 H -0.193 1.193
24 C -0.100 4.100
25 Cl -0.214 7.214
26 H 0.071 0.929
27 H 0.070 0.930
28 H 0.117 0.883
29 H 0.163 0.837
30 H 0.113 0.887
31 H 0.104 0.896
32 H 0.102 0.898
33 H 0.181 0.819
34 H 0.084 0.916
35 H 0.155 0.845
36 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -13.734 2.278 -0.888 13.950
hybrid contribution 0.548 -0.266 0.263 0.663
sum -13.186 2.012 -0.626 13.353
Atomic orbital electron populations
1.23049 0.79293 1.03896 1.00794 1.86259 1.20285 1.25229 1.89456
1.18072 0.89271 0.85192 1.05933 1.20971 0.99689 0.89751 1.02409
1.19979 0.92172 0.95305 1.16578 1.22079 0.91389 0.87345 0.71588
1.22190 0.94047 1.04539 1.04491 1.90592 1.74980 1.31059 1.36979
1.17457 0.89146 0.80631 0.97556 1.91545 1.82519 1.42887 1.92832
1.21287 1.02783 0.89879 1.10305 1.18399 0.88407 0.86824 0.90971
1.86257 1.22644 1.26417 1.84148 1.20751 0.72468 1.00595 0.91618
0.92842 1.20978 0.91244 1.11795 1.32100 0.90260 1.24989 0.96709
0.96781 0.95381 1.69787 1.06652 1.33961 1.41991 0.86131 0.78606
0.80806 0.79964 1.20071 1.20701 1.19308 1.25802 1.04577 0.86356
0.93284 1.98655 1.88942 1.53091 1.80703 0.92943 0.92972 0.88306
0.83684 0.88656 0.89584 0.89845 0.81859 0.91614 0.84545 0.90342
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.24 9.81 101.05 0.99 1.23 16
2 O -0.30 -4.69 10.27 -34.55 -0.35 -5.04 16
3 C 0.06 1.01 6.69 -39.21 -0.26 0.75 16
4 C -0.11 -1.49 8.34 -38.99 -0.33 -1.81 16
5 C -0.24 -3.75 5.88 -105.01 -0.62 -4.37 16
6 C 0.40 5.73 7.21 -30.91 -0.22 5.51 16
7 C -0.20 -1.75 9.75 36.01 0.35 -1.40 16
8 O -0.46 -8.33 16.07 5.52 0.09 -8.25 16
9 C 0.17 3.20 7.28 -38.90 -0.28 2.92 16
10 F -0.12 -2.38 15.53 2.25 0.03 -2.35 16
11 C -0.22 -4.36 6.97 -39.46 -0.27 -4.64 16
12 C 0.20 4.02 5.99 -38.88 -0.23 3.79 16
13 O -0.28 -6.32 9.49 -33.64 -0.32 -6.63 16
14 C 0.20 4.68 2.19 -27.88 -0.06 4.62 16
15 H 0.05 1.32 5.39 -51.93 -0.28 1.04 16
16 C -0.52 -13.16 8.89 -34.44 -0.31 -13.46 16
17 H 0.08 2.01 7.81 -52.48 -0.41 1.60 16
18 C 0.07 1.61 5.29 -17.82 -0.09 1.51 16
19 N -0.89 -22.43 11.29 55.43 0.63 -21.81 16
20 Si 0.92 19.37 29.54 -169.99 -5.02 14.35 16
21 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16
22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16
23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16
24 C -0.04 -0.83 6.17 37.16 0.23 -0.60 16
25 Cl -0.24 -4.88 25.55 -51.86 -1.33 -6.20 16
26 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16
27 H 0.05 0.41 7.66 -51.92 -0.40 0.01 16
28 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16
29 H 0.15 1.36 4.56 -52.49 -0.24 1.12 16
30 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16
31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16
32 H 0.08 0.57 6.45 -51.93 -0.34 0.23 16
33 H 0.16 3.42 5.06 -52.49 -0.27 3.15 16
34 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16
35 H 0.14 3.22 5.95 -51.93 -0.31 2.91 16
36 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16
LS Contribution 320.95 15.07 4.84 4.84
Total: -1.00 -28.67 320.95 -6.00 -34.67
By element:
Atomic # 1 Polarization: 5.84 SS G_CDS: -3.46 Total: 2.38 kcal
Atomic # 6 Polarization: -4.85 SS G_CDS: -1.11 Total: -5.96 kcal
Atomic # 7 Polarization: -22.43 SS G_CDS: 0.63 Total: -21.81 kcal
Atomic # 8 Polarization: -19.33 SS G_CDS: -0.59 Total: -19.92 kcal
Atomic # 9 Polarization: -2.38 SS G_CDS: 0.03 Total: -2.35 kcal
Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal
Atomic # 17 Polarization: -4.88 SS G_CDS: -1.33 Total: -6.20 kcal
Total LS contribution 4.84 Total: 4.84 kcal
Total: -28.67 -6.00 -34.67 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001230269278.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -104.467 kcal
(2) G-P(sol) polarization free energy of solvation -28.666 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.133 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.002 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.668 kcal
(6) G-S(sol) free energy of system = (1) + (5) -139.136 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds