Wall clock time and date at job start Tue Mar 31 2020 11:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36036 * 117.00276 * 2 1 4 4 C 1.37897 * 119.94906 * 0.02562 * 3 2 1 5 5 C 1.40158 * 119.84565 * 179.97438 * 4 3 2 6 6 C 1.46662 * 120.12234 * 179.97438 * 5 4 3 7 7 C 1.50705 * 120.00116 * 0.02732 * 6 5 4 8 8 O 1.21325 * 120.00008 * 180.02562 * 6 5 4 9 9 C 1.40268 * 119.75595 * 0.02562 * 5 4 3 10 10 F 1.35099 * 120.05097 * 179.97438 * 9 5 4 11 11 C 1.38007 * 119.90101 * 0.24779 * 9 5 4 12 12 C 1.38791 * 120.14698 * 359.47377 * 11 9 5 13 13 O 1.35748 * 119.87346 * 180.27628 * 12 11 9 14 14 C 1.42894 * 117.00332 * 356.74335 * 13 12 11 15 15 H 1.09007 * 109.46875 * 27.12953 * 14 13 12 16 16 C 1.50701 * 109.47098 * 147.12771 * 14 13 12 17 17 H 1.08003 * 120.00371 * 0.02562 * 16 14 13 18 18 C 1.37881 * 120.00201 * 180.02562 * 16 14 13 19 19 N 1.31514 * 119.99476 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00216 * 180.02562 * 18 16 14 21 21 H 1.48489 * 109.47145 * 89.99781 * 20 18 16 22 22 H 1.48496 * 109.46919 * 209.99869 * 20 18 16 23 23 H 1.48502 * 109.46780 * 329.99821 * 20 18 16 24 24 C 1.52998 * 109.47574 * 267.12904 * 14 13 12 25 25 Cl 1.80299 * 109.46937 * 64.99836 * 24 14 13 26 26 H 1.09006 * 109.46934 * 300.00344 * 1 2 3 27 27 H 1.09008 * 109.46765 * 59.99791 * 1 2 3 28 28 H 1.08997 * 109.47468 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.07802 * 0.02562 * 4 3 2 30 30 H 1.09004 * 109.46951 * 90.00080 * 7 6 5 31 31 H 1.09003 * 109.46958 * 209.99821 * 7 6 5 32 32 H 1.08995 * 109.46792 * 329.99970 * 7 6 5 33 33 H 1.07998 * 119.92376 * 179.72740 * 11 9 5 34 34 H 0.97001 * 119.99852 * 179.97438 * 19 18 16 35 35 H 1.09001 * 109.46975 * 184.99951 * 24 14 13 36 36 H 1.08998 * 109.47055 * 305.00217 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2121 0.0000 4 6 1.2946 2.3679 0.0005 5 6 1.9332 3.6156 0.0011 6 6 1.1394 4.8488 0.0011 7 6 -0.3659 4.7759 0.0011 8 8 1.6945 5.9276 0.0011 9 6 3.3344 3.6804 0.0005 10 9 3.9562 4.8798 0.0005 11 6 4.0770 2.5171 -0.0057 12 6 3.4404 1.2838 -0.0004 13 8 4.1763 0.1431 -0.0009 14 6 5.5958 0.2868 -0.0794 15 1 5.8875 1.2483 0.3433 16 6 6.2567 -0.8239 0.6957 17 1 5.6531 -1.5656 1.1976 18 6 7.6321 -0.8932 0.7640 19 7 8.3671 0.0097 0.1524 20 14 8.4513 -2.2704 1.7241 21 1 8.6857 -3.4289 0.8254 22 1 9.7493 -1.7927 2.2647 23 1 7.5701 -2.6841 2.8455 24 6 6.0353 0.2188 -1.5433 25 17 5.3627 1.6316 -2.4390 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 0.2161 2.3120 0.0014 30 1 -0.7288 4.7584 1.0288 31 1 -0.7718 5.6473 -0.5127 32 1 -0.6857 3.8694 -0.5127 33 1 5.1558 2.5667 -0.0106 34 1 9.3347 -0.0388 0.2008 35 1 7.1238 0.2391 -1.5972 36 1 5.6665 -0.7042 -1.9908 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230269278.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:12 Heat of formation + Delta-G solvation = -139.135530 kcal Electronic energy + Delta-G solvation = -24575.049678 eV Core-core repulsion = 20579.963156 eV Total energy + Delta-G solvation = -3995.086522 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.071 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.51993 -40.36144 -38.99564 -38.27646 -36.16351 -34.95515 -33.57501 -31.56582 -30.12074 -29.28444 -28.67080 -27.17824 -25.43783 -23.74333 -22.46892 -21.02373 -19.93907 -18.31997 -17.34954 -17.27989 -16.45509 -16.07819 -15.86100 -15.33292 -15.26002 -14.79824 -14.67745 -14.62070 -14.43015 -14.17302 -13.83252 -13.37948 -13.04557 -12.68008 -12.33249 -12.22168 -12.17826 -11.94556 -11.76810 -11.52740 -11.37371 -11.21818 -11.09220 -10.82893 -10.66128 -10.36731 -9.85947 -9.63170 -9.53012 -9.33954 -8.78206 -8.33258 -7.46007 -6.51729 -4.60265 0.79511 1.41735 2.54429 3.08313 3.16927 3.20583 3.29385 3.37550 3.74540 3.81684 4.09222 4.20278 4.43764 4.80128 4.84315 4.96085 5.04499 5.15851 5.23281 5.29702 5.34934 5.41138 5.48365 5.74767 5.78159 5.97645 6.06989 6.11640 6.27473 6.32183 6.62088 6.81422 7.01501 7.34713 7.48742 7.62705 7.63115 8.08164 8.54207 9.07844 10.55470 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.016189 B = 0.004552 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.143088 B = 6149.099090 C = 6843.931386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.299 6.299 3 C 0.061 3.939 4 C -0.109 4.109 5 C -0.238 4.238 6 C 0.397 3.603 7 C -0.196 4.196 8 O -0.459 6.459 9 C 0.172 3.828 10 F -0.120 7.120 11 C -0.223 4.223 12 C 0.204 3.796 13 O -0.283 6.283 14 C 0.200 3.800 15 H 0.054 0.946 16 C -0.524 4.524 17 H 0.079 0.921 18 C 0.065 3.935 19 N -0.887 5.887 20 Si 0.919 3.081 21 H -0.275 1.275 22 H -0.282 1.282 23 H -0.269 1.269 24 C -0.038 4.038 25 Cl -0.240 7.240 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.099 0.901 29 H 0.146 0.854 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.164 0.836 34 H 0.274 0.726 35 H 0.137 0.863 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.248 1.930 -0.795 14.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.212 6.212 3 C 0.015 3.985 4 C -0.128 4.128 5 C -0.240 4.240 6 C 0.276 3.724 7 C -0.253 4.253 8 O -0.336 6.336 9 C 0.152 3.848 10 F -0.098 7.098 11 C -0.243 4.243 12 C 0.154 3.846 13 O -0.195 6.195 14 C 0.146 3.854 15 H 0.072 0.928 16 C -0.561 4.561 17 H 0.097 0.903 18 C -0.139 4.139 19 N -0.524 5.524 20 Si 0.745 3.255 21 H -0.201 1.201 22 H -0.207 1.207 23 H -0.193 1.193 24 C -0.100 4.100 25 Cl -0.214 7.214 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.117 0.883 29 H 0.163 0.837 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.181 0.819 34 H 0.084 0.916 35 H 0.155 0.845 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.734 2.278 -0.888 13.950 hybrid contribution 0.548 -0.266 0.263 0.663 sum -13.186 2.012 -0.626 13.353 Atomic orbital electron populations 1.23049 0.79293 1.03896 1.00794 1.86259 1.20285 1.25229 1.89456 1.18072 0.89271 0.85192 1.05933 1.20971 0.99689 0.89751 1.02409 1.19979 0.92172 0.95305 1.16578 1.22079 0.91389 0.87345 0.71588 1.22190 0.94047 1.04539 1.04491 1.90592 1.74980 1.31059 1.36979 1.17457 0.89146 0.80631 0.97556 1.91545 1.82519 1.42887 1.92832 1.21287 1.02783 0.89879 1.10305 1.18399 0.88407 0.86824 0.90971 1.86257 1.22644 1.26417 1.84148 1.20751 0.72468 1.00595 0.91618 0.92842 1.20978 0.91244 1.11795 1.32100 0.90260 1.24989 0.96709 0.96781 0.95381 1.69787 1.06652 1.33961 1.41991 0.86131 0.78606 0.80806 0.79964 1.20071 1.20701 1.19308 1.25802 1.04577 0.86356 0.93284 1.98655 1.88942 1.53091 1.80703 0.92943 0.92972 0.88306 0.83684 0.88656 0.89584 0.89845 0.81859 0.91614 0.84545 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.30 -4.69 10.27 -34.55 -0.35 -5.04 16 3 C 0.06 1.01 6.69 -39.21 -0.26 0.75 16 4 C -0.11 -1.49 8.34 -38.99 -0.33 -1.81 16 5 C -0.24 -3.75 5.88 -105.01 -0.62 -4.37 16 6 C 0.40 5.73 7.21 -30.91 -0.22 5.51 16 7 C -0.20 -1.75 9.75 36.01 0.35 -1.40 16 8 O -0.46 -8.33 16.07 5.52 0.09 -8.25 16 9 C 0.17 3.20 7.28 -38.90 -0.28 2.92 16 10 F -0.12 -2.38 15.53 2.25 0.03 -2.35 16 11 C -0.22 -4.36 6.97 -39.46 -0.27 -4.64 16 12 C 0.20 4.02 5.99 -38.88 -0.23 3.79 16 13 O -0.28 -6.32 9.49 -33.64 -0.32 -6.63 16 14 C 0.20 4.68 2.19 -27.88 -0.06 4.62 16 15 H 0.05 1.32 5.39 -51.93 -0.28 1.04 16 16 C -0.52 -13.16 8.89 -34.44 -0.31 -13.46 16 17 H 0.08 2.01 7.81 -52.48 -0.41 1.60 16 18 C 0.07 1.61 5.29 -17.82 -0.09 1.51 16 19 N -0.89 -22.43 11.29 55.43 0.63 -21.81 16 20 Si 0.92 19.37 29.54 -169.99 -5.02 14.35 16 21 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 22 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 C -0.04 -0.83 6.17 37.16 0.23 -0.60 16 25 Cl -0.24 -4.88 25.55 -51.86 -1.33 -6.20 16 26 H 0.05 0.41 7.65 -51.93 -0.40 0.01 16 27 H 0.05 0.41 7.66 -51.92 -0.40 0.01 16 28 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.15 1.36 4.56 -52.49 -0.24 1.12 16 30 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 0.57 6.45 -51.93 -0.34 0.23 16 33 H 0.16 3.42 5.06 -52.49 -0.27 3.15 16 34 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 35 H 0.14 3.22 5.95 -51.93 -0.31 2.91 16 36 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 320.95 15.07 4.84 4.84 Total: -1.00 -28.67 320.95 -6.00 -34.67 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -3.46 Total: 2.38 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -1.11 Total: -5.96 kcal Atomic # 7 Polarization: -22.43 SS G_CDS: 0.63 Total: -21.81 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.59 Total: -19.92 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.03 Total: -2.35 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Atomic # 17 Polarization: -4.88 SS G_CDS: -1.33 Total: -6.20 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.67 -6.00 -34.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230269278.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.467 kcal (2) G-P(sol) polarization free energy of solvation -28.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds