Wall clock time and date at job start Tue Mar 31 2020 11:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36036 * 117.00276 * 2 1 4 4 C 1.37897 * 119.94906 * 0.02562 * 3 2 1 5 5 C 1.40158 * 119.84565 * 179.97438 * 4 3 2 6 6 C 1.46662 * 120.12234 * 179.97438 * 5 4 3 7 7 C 1.50705 * 120.00116 * 0.02732 * 6 5 4 8 8 O 1.21325 * 120.00008 * 180.02562 * 6 5 4 9 9 C 1.40268 * 119.75595 * 0.02562 * 5 4 3 10 10 F 1.35099 * 120.05097 * 179.97438 * 9 5 4 11 11 C 1.38007 * 119.90101 * 0.24779 * 9 5 4 12 12 C 1.38791 * 120.14698 * 359.47377 * 11 9 5 13 13 O 1.35748 * 119.87346 * 180.27628 * 12 11 9 14 14 C 1.42894 * 117.00332 * 356.74335 * 13 12 11 15 15 H 1.09007 * 109.46875 * 27.12953 * 14 13 12 16 16 C 1.50701 * 109.47098 * 147.12771 * 14 13 12 17 17 H 1.08003 * 120.00371 * 0.02562 * 16 14 13 18 18 C 1.37881 * 120.00201 * 180.02562 * 16 14 13 19 19 N 1.31514 * 119.99476 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00216 * 180.02562 * 18 16 14 21 21 H 1.48489 * 109.47145 * 89.99781 * 20 18 16 22 22 H 1.48496 * 109.46919 * 209.99869 * 20 18 16 23 23 H 1.48502 * 109.46780 * 329.99821 * 20 18 16 24 24 C 1.52998 * 109.47574 * 267.12904 * 14 13 12 25 25 Cl 1.80299 * 109.46937 * 64.99836 * 24 14 13 26 26 H 1.09006 * 109.46934 * 300.00344 * 1 2 3 27 27 H 1.09008 * 109.46765 * 59.99791 * 1 2 3 28 28 H 1.08997 * 109.47468 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.07802 * 0.02562 * 4 3 2 30 30 H 1.09004 * 109.46951 * 90.00080 * 7 6 5 31 31 H 1.09003 * 109.46958 * 209.99821 * 7 6 5 32 32 H 1.08995 * 109.46792 * 329.99970 * 7 6 5 33 33 H 1.07998 * 119.92376 * 179.72740 * 11 9 5 34 34 H 0.97001 * 119.99852 * 179.97438 * 19 18 16 35 35 H 1.09001 * 109.46975 * 184.99951 * 24 14 13 36 36 H 1.08998 * 109.47055 * 305.00217 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2121 0.0000 4 6 1.2946 2.3679 0.0005 5 6 1.9332 3.6156 0.0011 6 6 1.1394 4.8488 0.0011 7 6 -0.3659 4.7759 0.0011 8 8 1.6945 5.9276 0.0011 9 6 3.3344 3.6804 0.0005 10 9 3.9562 4.8798 0.0005 11 6 4.0770 2.5171 -0.0057 12 6 3.4404 1.2838 -0.0004 13 8 4.1763 0.1431 -0.0009 14 6 5.5958 0.2868 -0.0794 15 1 5.8875 1.2483 0.3433 16 6 6.2567 -0.8239 0.6957 17 1 5.6531 -1.5656 1.1976 18 6 7.6321 -0.8932 0.7640 19 7 8.3671 0.0097 0.1524 20 14 8.4513 -2.2704 1.7241 21 1 8.6857 -3.4289 0.8254 22 1 9.7493 -1.7927 2.2647 23 1 7.5701 -2.6841 2.8455 24 6 6.0353 0.2188 -1.5433 25 17 5.3627 1.6316 -2.4390 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 0.2161 2.3120 0.0014 30 1 -0.7288 4.7584 1.0288 31 1 -0.7718 5.6473 -0.5127 32 1 -0.6857 3.8694 -0.5127 33 1 5.1558 2.5667 -0.0106 34 1 9.3347 -0.0388 0.2008 35 1 7.1238 0.2391 -1.5972 36 1 5.6665 -0.7042 -1.9908 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230269278.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:11 Heat of formation + Delta-G solvation = -155.670419 kcal Electronic energy + Delta-G solvation = -24575.766685 eV Core-core repulsion = 20579.963156 eV Total energy + Delta-G solvation = -3995.803529 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.071 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.99983 -41.68802 -40.26440 -39.62383 -37.51236 -36.66181 -35.41130 -32.80419 -31.71839 -30.55335 -29.82613 -28.08350 -27.32539 -25.12769 -23.86182 -22.54018 -21.16263 -19.76277 -18.96180 -18.53747 -18.01361 -17.51289 -17.15490 -16.78227 -16.47625 -16.33054 -15.94989 -15.78587 -15.72637 -15.60200 -15.37154 -14.82654 -14.35079 -14.18715 -13.92620 -13.44426 -13.16177 -13.04291 -13.03304 -12.99026 -12.86137 -12.74942 -12.42698 -12.33582 -12.07595 -11.85237 -11.55240 -11.27318 -11.08326 -10.80228 -10.62507 -9.74612 -8.84381 -8.40279 -6.56799 -0.49692 0.07028 1.34124 1.38820 1.43467 1.53205 1.56476 2.17431 2.31389 2.46883 2.52403 2.94593 3.01591 3.10845 3.53433 3.92764 3.95214 4.12195 4.23995 4.32635 4.39491 4.47979 4.55275 4.61215 4.70502 4.73831 4.76204 4.88108 4.92108 4.95164 5.16545 5.25792 5.44945 5.52302 5.76743 6.17637 6.48040 6.52748 6.70177 7.15503 8.66475 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.016189 B = 0.004552 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1729.143088 B = 6149.099090 C = 6843.931386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.325 6.325 3 C 0.067 3.933 4 C -0.081 4.081 5 C -0.229 4.229 6 C 0.396 3.604 7 C -0.187 4.187 8 O -0.503 6.503 9 C 0.139 3.861 10 F -0.136 7.136 11 C -0.227 4.227 12 C 0.166 3.834 13 O -0.301 6.301 14 C 0.206 3.794 15 H 0.032 0.968 16 C -0.547 4.547 17 H 0.070 0.930 18 C 0.028 3.972 19 N -0.909 5.909 20 Si 0.979 3.021 21 H -0.267 1.267 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.027 4.027 25 Cl -0.225 7.225 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.115 0.885 29 H 0.202 0.798 30 H 0.123 0.877 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.138 0.862 34 H 0.277 0.723 35 H 0.120 0.880 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.699 1.388 -0.635 17.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.240 6.240 3 C 0.021 3.979 4 C -0.099 4.099 5 C -0.231 4.231 6 C 0.278 3.722 7 C -0.243 4.243 8 O -0.383 6.383 9 C 0.119 3.881 10 F -0.115 7.115 11 C -0.247 4.247 12 C 0.118 3.882 13 O -0.213 6.213 14 C 0.151 3.849 15 H 0.050 0.950 16 C -0.585 4.585 17 H 0.089 0.911 18 C -0.174 4.174 19 N -0.546 5.546 20 Si 0.803 3.197 21 H -0.192 1.192 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.090 4.090 25 Cl -0.199 7.199 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.134 0.866 29 H 0.219 0.781 30 H 0.141 0.859 31 H 0.114 0.886 32 H 0.133 0.867 33 H 0.155 0.845 34 H 0.086 0.914 35 H 0.138 0.862 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.220 1.736 -0.737 17.323 hybrid contribution 1.435 -0.034 0.197 1.449 sum -15.785 1.703 -0.540 15.886 Atomic orbital electron populations 1.23538 0.75871 1.06051 1.03120 1.86245 1.23862 1.24742 1.89144 1.18184 0.88224 0.86772 1.04684 1.21448 1.01935 0.87367 0.99191 1.20477 0.91026 0.97404 1.14217 1.22908 0.94007 0.85683 0.69652 1.22258 0.88580 1.06677 1.06771 1.90593 1.76407 1.32352 1.38906 1.17765 0.90708 0.79747 0.99927 1.91494 1.83073 1.43602 1.93294 1.21045 1.01660 0.90755 1.11209 1.18725 0.89846 0.85883 0.93775 1.86184 1.21726 1.27865 1.85565 1.20450 0.73610 0.98937 0.91856 0.95039 1.21201 0.91930 1.12304 1.33027 0.91139 1.25743 0.96956 0.98730 0.95967 1.69883 1.06907 1.35188 1.42668 0.85207 0.77515 0.78270 0.78719 1.19189 1.20293 1.19192 1.25470 1.03419 0.86997 0.93109 1.98647 1.88716 1.52314 1.80217 0.90425 0.90525 0.86639 0.78123 0.85921 0.88593 0.86664 0.84492 0.91386 0.86234 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.23 16 2 O -0.33 -9.43 10.27 -79.91 -0.82 -10.25 16 3 C 0.07 2.12 6.69 22.51 0.15 2.27 16 4 C -0.08 -1.91 8.34 22.66 0.19 -1.72 16 5 C -0.23 -6.79 5.88 -20.12 -0.12 -6.91 16 6 C 0.40 10.37 7.21 27.89 0.20 10.57 16 7 C -0.19 -2.30 9.75 71.24 0.69 -1.61 16 8 O -0.50 -17.85 16.07 -3.17 -0.05 -17.91 16 9 C 0.14 5.29 7.28 22.71 0.17 5.45 16 10 F -0.14 -5.71 15.53 44.97 0.70 -5.01 16 11 C -0.23 -9.34 6.97 22.35 0.16 -9.19 16 12 C 0.17 6.71 5.99 22.72 0.14 6.84 16 13 O -0.30 -13.97 9.49 -76.68 -0.73 -14.70 16 14 C 0.21 10.18 2.19 29.85 0.07 10.25 16 15 H 0.03 1.69 5.39 -2.38 -0.01 1.68 16 16 C -0.55 -28.60 8.89 25.60 0.23 -28.37 16 17 H 0.07 3.71 7.81 -2.91 -0.02 3.68 16 18 C 0.03 1.39 5.29 84.66 0.45 1.84 16 19 N -0.91 -47.47 11.29 21.45 0.24 -47.22 16 20 Si 0.98 40.12 29.54 68.60 2.03 42.15 16 21 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 22 H -0.28 -11.12 7.11 99.48 0.71 -10.42 16 23 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 24 C -0.03 -1.25 6.17 71.98 0.44 -0.81 16 25 Cl -0.22 -9.47 25.55 -2.72 -0.07 -9.54 16 26 H 0.08 0.75 7.65 -2.38 -0.02 0.73 16 27 H 0.08 0.75 7.66 -2.38 -0.02 0.74 16 28 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.20 2.35 4.56 -2.91 -0.01 2.34 16 30 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.11 0.71 6.45 -2.39 -0.02 0.69 16 33 H 0.14 6.27 5.06 -2.91 -0.01 6.26 16 34 H 0.28 13.61 8.31 -92.71 -0.77 12.83 16 35 H 0.12 5.93 5.95 -2.39 -0.01 5.91 16 36 H 0.08 3.62 8.14 -2.39 -0.02 3.60 16 Total: -1.00 -67.50 320.95 6.31 -61.19 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.14 Total: 11.45 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 3.87 Total: -10.15 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.24 Total: -47.22 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -1.60 Total: -42.86 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 0.70 Total: -5.01 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Atomic # 17 Polarization: -9.47 SS G_CDS: -0.07 Total: -9.54 kcal Total: -67.50 6.31 -61.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230269278.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.484 kcal (2) G-P(sol) polarization free energy of solvation -67.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds