Wall clock time and date at job start Tue Mar 31 2020 11:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.46966 * 2 1 4 4 C 1.34768 * 117.00021 * 180.02562 * 3 2 1 5 5 O 1.21522 * 119.99752 * 0.02562 * 4 3 2 6 6 C 1.47305 * 120.00089 * 180.02562 * 4 3 2 7 7 C 1.39874 * 120.11873 * 359.97438 * 6 4 3 8 8 C 1.37576 * 119.93270 * 180.02562 * 7 6 4 9 9 C 1.39120 * 120.16815 * 0.02562 * 8 7 6 10 10 O 1.35699 * 119.88510 * 180.02562 * 9 8 7 11 11 C 1.42898 * 116.99877 * 0.19102 * 10 9 8 12 12 H 1.08997 * 109.47216 * 23.96737 * 11 10 9 13 13 C 1.50704 * 109.47047 * 143.96662 * 11 10 9 14 14 H 1.07995 * 119.99852 * 25.52811 * 13 11 10 15 15 C 1.37874 * 119.99983 * 205.53439 * 13 11 10 16 16 N 1.31517 * 120.00053 * 185.07559 * 15 13 11 17 17 Si 1.86807 * 120.00084 * 5.06466 * 15 13 11 18 18 H 1.48496 * 109.46750 * 94.54005 * 17 15 13 19 19 H 1.48502 * 109.47049 * 214.53738 * 17 15 13 20 20 H 1.48498 * 109.46971 * 334.53738 * 17 15 13 21 21 C 1.53004 * 109.47313 * 263.96358 * 11 10 9 22 22 Cl 1.80298 * 109.46833 * 63.48454 * 21 11 10 23 23 C 1.38853 * 120.23219 * 359.72080 * 9 8 7 24 24 C 1.38042 * 120.06297 * 0.55693 * 23 9 8 25 25 F 1.35107 * 120.08004 * 179.72323 * 24 23 9 26 26 H 1.09004 * 109.47039 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46866 * 299.99128 * 1 2 3 28 28 H 1.08997 * 109.47417 * 59.99564 * 1 2 3 29 29 H 1.09009 * 109.47147 * 240.00564 * 2 1 3 30 30 H 1.08997 * 109.47417 * 120.00436 * 2 1 3 31 31 H 1.08003 * 120.03005 * 0.04306 * 7 6 4 32 32 H 1.07998 * 119.91677 * 179.97438 * 8 7 6 33 33 H 0.97001 * 119.99975 * 180.02562 * 16 15 13 34 34 H 1.08996 * 109.46941 * 183.48234 * 21 11 10 35 35 H 1.08992 * 109.47156 * 303.48244 * 21 11 10 36 36 H 1.07993 * 119.96582 * 180.30328 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3500 1.5456 -0.0005 5 8 4.0903 0.5818 -0.0015 6 6 3.9130 2.9068 0.0000 7 6 3.0632 4.0178 0.0005 8 6 3.5932 5.2874 0.0005 9 6 4.9724 5.4693 -0.0006 10 8 5.4890 6.7241 -0.0001 11 6 4.5585 7.8086 0.0058 12 1 3.6109 7.4721 0.4263 13 6 5.1068 8.9363 0.8418 14 1 6.1733 9.0393 0.9767 15 6 4.2468 9.8365 1.4343 16 7 4.7265 10.8769 2.0801 17 14 2.4002 9.5784 1.3196 18 1 1.9255 8.8560 2.5270 19 1 1.7208 10.8960 1.2320 20 1 2.0865 8.7782 0.1086 21 6 4.3358 8.2974 -1.4269 22 17 3.5848 6.9796 -2.4015 23 6 5.8224 4.3713 0.0042 24 6 5.3010 3.0931 -0.0016 25 9 6.1278 2.0245 -0.0026 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.9922 3.8790 0.0012 32 1 2.9368 6.1450 0.0005 33 1 4.1214 11.5099 2.4973 34 1 3.6744 9.1637 -1.4165 35 1 5.2925 8.5760 -1.8685 36 1 6.8924 4.5175 0.0083 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233593170.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:25 Heat of formation + Delta-G solvation = -169.489774 kcal Electronic energy + Delta-G solvation = -23973.628738 eV Core-core repulsion = 19977.225957 eV Total energy + Delta-G solvation = -3996.402781 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.071 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.12103 -41.67388 -41.05098 -38.51544 -37.59632 -36.76223 -35.26314 -33.12846 -32.51346 -31.66500 -31.06577 -27.24532 -25.76103 -24.45755 -24.00988 -22.78497 -21.75792 -19.94339 -19.23261 -18.91356 -18.09921 -17.69581 -17.43611 -17.26063 -16.88969 -16.68744 -16.13745 -15.51805 -15.36678 -15.09456 -14.92663 -14.73360 -14.60305 -14.45506 -13.84312 -13.65878 -13.58763 -13.41179 -13.11293 -12.92783 -12.81379 -12.54912 -12.45289 -12.39042 -11.87243 -11.65951 -11.54364 -11.50954 -11.26715 -11.16607 -10.85146 -10.07590 -9.35959 -8.48473 -6.63556 -0.47776 0.05387 1.27220 1.35706 1.37525 1.39372 1.43394 1.52639 2.08630 2.20353 2.48894 2.88203 3.09299 3.54986 3.62906 3.74675 3.95971 4.01774 4.02031 4.08344 4.19127 4.19847 4.34822 4.42004 4.62439 4.82789 4.84639 4.90528 4.94502 4.99411 5.09025 5.12732 5.24635 5.38217 5.45405 5.89381 6.42143 6.56703 6.61663 7.04335 8.66279 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.016144 B = 0.003993 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1733.974323 B = 7010.816903 C = 7524.654602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 O -0.351 6.351 4 C 0.520 3.480 5 O -0.535 6.535 6 C -0.228 4.228 7 C 0.022 3.978 8 C -0.229 4.229 9 C 0.207 3.793 10 O -0.304 6.304 11 C 0.181 3.819 12 H 0.065 0.935 13 C -0.541 4.541 14 H 0.046 0.954 15 C 0.038 3.962 16 N -0.918 5.918 17 Si 0.917 3.083 18 H -0.261 1.261 19 H -0.272 1.272 20 H -0.223 1.223 21 C -0.039 4.039 22 Cl -0.205 7.205 23 C -0.216 4.216 24 C 0.195 3.805 25 F -0.123 7.123 26 H 0.102 0.898 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.175 0.825 32 H 0.150 0.850 33 H 0.278 0.722 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.352 -14.830 -5.512 18.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 O -0.268 6.268 4 C 0.367 3.633 5 O -0.427 6.427 6 C -0.230 4.230 7 C 0.004 3.996 8 C -0.247 4.247 9 C 0.158 3.842 10 O -0.216 6.216 11 C 0.126 3.874 12 H 0.083 0.917 13 C -0.578 4.578 14 H 0.064 0.936 15 C -0.164 4.164 16 N -0.555 5.555 17 Si 0.737 3.263 18 H -0.186 1.186 19 H -0.197 1.197 20 H -0.145 1.145 21 C -0.102 4.102 22 Cl -0.179 7.179 23 C -0.235 4.235 24 C 0.175 3.825 25 F -0.101 7.101 26 H 0.120 0.880 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.192 0.808 32 H 0.167 0.833 33 H 0.088 0.912 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.023 -15.017 -5.488 18.871 hybrid contribution -0.035 0.138 0.214 0.257 sum -10.059 -14.880 -5.274 18.719 Atomic orbital electron populations 1.21832 0.90019 1.04503 1.03870 1.23360 0.97209 0.78703 1.02717 1.86536 1.22213 1.34120 1.83940 1.20759 0.81253 0.88979 0.72280 1.90858 1.61011 1.43068 1.47763 1.18974 0.91730 0.91988 1.20357 1.21228 1.01066 0.88772 0.88531 1.21569 0.94082 0.99482 1.09596 1.19278 0.92151 0.85360 0.87422 1.86184 1.38369 1.12014 1.85031 1.20821 0.90538 0.83594 0.92455 0.91737 1.20776 0.95068 1.10001 1.31974 0.93553 1.25741 1.04105 0.93658 0.92907 1.69967 1.38177 1.13050 1.34280 0.86186 0.78754 0.79771 0.81562 1.18556 1.19679 1.14500 1.25718 1.01097 0.91173 0.92251 1.98678 1.85591 1.57451 1.76189 1.20196 1.01950 0.88198 1.13196 1.17242 0.86184 0.82983 0.96085 1.91558 1.71465 1.54245 1.92810 0.87992 0.91143 0.91143 0.91211 0.91217 0.80811 0.83289 0.91220 0.87406 0.88271 0.82452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.29 71.98 0.74 -0.90 16 2 C 0.05 0.96 6.20 71.98 0.45 1.41 16 3 O -0.35 -8.39 9.46 -56.79 -0.54 -8.93 16 4 C 0.52 15.39 7.88 70.21 0.55 15.94 16 5 O -0.54 -18.54 15.12 19.76 0.30 -18.25 16 6 C -0.23 -6.75 5.88 -20.06 -0.12 -6.86 16 7 C 0.02 0.58 9.60 22.51 0.22 0.79 16 8 C -0.23 -6.93 7.14 22.32 0.16 -6.77 16 9 C 0.21 7.11 6.04 22.63 0.14 7.24 16 10 O -0.30 -12.20 9.68 -90.18 -0.87 -13.08 16 11 C 0.18 7.33 1.70 29.85 0.05 7.38 16 12 H 0.07 2.47 2.90 -2.39 -0.01 2.47 16 13 C -0.54 -27.31 9.23 25.60 0.24 -27.07 16 14 H 0.05 2.70 8.06 -2.91 -0.02 2.68 16 15 C 0.04 1.93 5.47 84.65 0.46 2.39 16 16 N -0.92 -50.73 13.96 21.45 0.30 -50.43 16 17 Si 0.92 35.62 26.37 68.60 1.81 37.43 16 18 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 19 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 20 H -0.22 -7.41 5.97 99.48 0.59 -6.82 16 21 C -0.04 -1.38 5.95 71.98 0.43 -0.96 16 22 Cl -0.21 -6.38 25.75 -2.72 -0.07 -6.45 16 23 C -0.22 -6.92 9.95 22.37 0.22 -6.69 16 24 C 0.20 6.21 7.28 22.66 0.16 6.38 16 25 F -0.12 -4.14 15.54 44.97 0.70 -3.44 16 26 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.17 3.47 7.60 -2.91 -0.02 3.45 16 32 H 0.15 4.45 5.06 -2.91 -0.01 4.43 16 33 H 0.28 14.18 8.31 -92.71 -0.77 13.41 16 34 H 0.11 3.62 6.91 -2.39 -0.02 3.60 16 35 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 36 H 0.16 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -60.19 324.44 6.34 -53.85 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 1.01 Total: 17.00 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 3.70 Total: -7.71 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.30 Total: -50.43 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -1.11 Total: -40.25 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.70 Total: -3.44 kcal Atomic # 14 Polarization: 35.62 SS G_CDS: 1.81 Total: 37.43 kcal Atomic # 17 Polarization: -6.38 SS G_CDS: -0.07 Total: -6.45 kcal Total: -60.19 6.34 -53.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233593170.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.638 kcal (2) G-P(sol) polarization free energy of solvation -60.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds