Wall clock time and date at job start Tue Mar 31 2020 10:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36254 * 119.94174 * 2 1 4 4 C 1.40940 * 119.87944 * 180.29872 * 3 2 1 5 5 C 1.40981 * 120.10847 * 179.69407 * 4 3 2 6 6 H 1.08003 * 119.99902 * 204.69872 * 5 4 3 7 7 C 1.40096 * 120.00413 * 24.70496 * 5 4 3 8 8 N 1.30739 * 120.00226 * 17.91670 * 7 5 4 9 9 Si 1.86803 * 119.99961 * 197.92579 * 7 5 4 10 10 H 1.48501 * 109.47456 * 59.99302 * 9 7 5 11 11 H 1.48501 * 109.47088 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46529 * 299.99266 * 9 7 5 13 13 C 1.40965 * 119.77313 * 359.70999 * 4 3 2 14 14 C 1.36221 * 119.88189 * 0.02562 * 13 4 3 15 15 C 1.39979 * 119.94166 * 179.75783 * 2 1 3 16 16 C 1.47875 * 119.88464 * 359.97438 * 15 2 1 17 17 C 1.39792 * 119.98184 * 129.72395 * 16 15 2 18 18 C 1.36523 * 120.17397 * 180.02562 * 17 16 15 19 19 C 1.39854 * 120.13173 * 359.97438 * 18 17 16 20 20 C 1.47511 * 120.01677 * 180.02562 * 19 18 17 21 21 O 1.21505 * 119.99769 * 180.02562 * 20 19 18 22 22 O 1.34756 * 120.00050 * 0.02562 * 20 19 18 23 23 C 1.39948 * 119.96203 * 0.02933 * 19 18 17 24 24 Cl 1.73600 * 120.08595 * 179.97438 * 23 19 18 25 25 C 1.37811 * 119.82804 * 359.97438 * 23 19 18 26 26 H 1.08998 * 109.47134 * 270.23891 * 1 2 3 27 27 H 1.08993 * 109.47368 * 30.24637 * 1 2 3 28 28 H 1.09004 * 109.47209 * 150.24545 * 1 2 3 29 29 H 1.07995 * 120.05436 * 0.02562 * 3 2 1 30 30 H 0.96994 * 120.00483 * 180.02562 * 8 7 5 31 31 H 1.08000 * 120.05686 * 179.97438 * 13 4 3 32 32 H 1.07997 * 119.93852 * 179.97438 * 14 13 4 33 33 H 1.08008 * 119.91652 * 359.72713 * 17 16 15 34 34 H 1.08007 * 119.93454 * 179.97438 * 18 17 16 35 35 H 0.96702 * 116.99280 * 179.97438 * 22 20 19 36 36 H 1.08007 * 120.06581 * 179.97438 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.1807 0.0000 4 6 3.5964 1.1792 -0.0064 5 6 4.3049 2.3980 -0.0129 6 1 5.3092 2.4367 -0.4084 7 6 3.7064 3.5590 0.4937 8 7 2.6635 3.4684 1.2769 9 14 4.3984 5.2364 0.0500 10 1 4.3468 5.4194 -1.4228 11 1 3.5913 6.2948 0.7085 12 1 5.8070 5.3284 0.5112 13 6 4.2951 -0.0452 -0.0065 14 6 3.6056 -1.2200 -0.0010 15 6 2.2056 -1.2130 0.0051 16 6 1.4624 -2.4913 0.0111 17 6 1.7799 -3.4883 -0.9159 18 6 1.0959 -4.6699 -0.9142 19 6 0.0743 -4.8884 0.0156 20 6 -0.6627 -6.1662 0.0155 21 8 -1.5505 -6.3554 0.8233 22 8 -0.3515 -7.1235 -0.8804 23 6 -0.2482 -3.8941 0.9461 24 17 -1.5161 -4.1616 2.1014 25 6 0.4432 -2.7020 0.9430 26 1 -0.3633 0.0043 1.0276 27 1 -0.3634 0.8877 -0.5176 28 1 -0.3634 -0.8922 -0.5100 29 1 1.6470 2.1159 0.0004 30 1 2.2489 4.2722 1.6273 31 1 5.3750 -0.0517 -0.0118 32 1 4.1400 -2.1585 -0.0016 33 1 2.5652 -3.3217 -1.6385 34 1 1.3441 -5.4374 -1.6325 35 1 -0.8619 -7.9439 -0.8412 36 1 0.1972 -1.9318 1.6591 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241350245.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:47 Heat of formation + Delta-G solvation = -61.437568 kcal Electronic energy + Delta-G solvation = -22605.936621 eV Core-core repulsion = 19044.988560 eV Total energy + Delta-G solvation = -3560.948061 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.065 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.31708 -39.04076 -37.55137 -36.29642 -35.90379 -34.23284 -32.22449 -31.40028 -30.59075 -29.13458 -26.04460 -26.00810 -23.68140 -22.47481 -21.58290 -20.43577 -19.74483 -18.07629 -17.41626 -17.27611 -16.06552 -15.59835 -15.44333 -15.10647 -14.56288 -14.11501 -13.98750 -13.77657 -13.48872 -13.02740 -12.91773 -12.72269 -12.35933 -11.99896 -11.73495 -11.57868 -11.50029 -11.43599 -11.31689 -11.20185 -11.12414 -11.03428 -10.77819 -10.44475 -9.95258 -9.75510 -9.66132 -9.43038 -8.74161 -8.62434 -7.57598 -7.39627 -7.01963 -4.57188 0.68441 1.43555 2.24916 2.40182 2.75461 2.92073 2.94097 2.95365 3.04188 3.07522 3.73401 3.87777 4.38285 4.84585 5.11482 5.20100 5.39933 5.46816 5.55836 5.74904 5.91407 5.94787 6.07125 6.19778 6.24793 6.33461 6.36398 6.46695 6.55986 6.66868 6.74116 6.83414 6.90962 7.11451 7.13934 7.41163 7.67403 7.82966 7.90794 7.92939 8.05369 8.38260 8.61891 8.73396 9.88943 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.028712 B = 0.003031 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.963813 B = 9237.141874 C = 9907.083781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.039 4.039 3 C -0.169 4.169 4 C 0.123 3.877 5 C -0.445 4.445 6 H 0.083 0.917 7 C 0.074 3.926 8 N -0.773 5.773 9 Si 0.912 3.088 10 H -0.261 1.261 11 H -0.276 1.276 12 H -0.263 1.263 13 C -0.233 4.233 14 C -0.053 4.053 15 C -0.225 4.225 16 C 0.079 3.921 17 C -0.146 4.146 18 C -0.044 4.044 19 C -0.167 4.167 20 C 0.524 3.476 21 O -0.504 6.504 22 O -0.517 6.517 23 C 0.031 3.969 24 Cl -0.047 7.047 25 C -0.137 4.137 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.121 0.879 30 H 0.287 0.713 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.410 0.590 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.913 -10.270 -3.105 11.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.040 4.040 3 C -0.189 4.189 4 C 0.120 3.880 5 C -0.472 4.472 6 H 0.101 0.899 7 C -0.147 4.147 8 N -0.396 5.396 9 Si 0.736 3.264 10 H -0.185 1.185 11 H -0.201 1.201 12 H -0.187 1.187 13 C -0.252 4.252 14 C -0.071 4.071 15 C -0.226 4.226 16 C 0.078 3.922 17 C -0.164 4.164 18 C -0.062 4.062 19 C -0.169 4.169 20 C 0.369 3.631 21 O -0.393 6.393 22 O -0.329 6.329 23 C 0.004 3.996 24 Cl -0.017 7.017 25 C -0.156 4.156 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.138 0.862 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.267 0.733 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.218 -9.816 -2.630 11.003 hybrid contribution -0.124 0.231 0.090 0.277 sum -4.342 -9.586 -2.540 10.825 Atomic orbital electron populations 1.20819 0.93655 1.01095 1.01008 1.19220 0.93751 0.92650 0.98359 1.20865 0.94225 0.96163 1.07605 1.17713 0.92076 0.92142 0.86115 1.19722 1.01417 0.92364 1.33712 0.89913 1.26052 0.94166 1.01930 0.92531 1.69769 1.17400 1.32217 1.20251 0.86291 0.80015 0.79932 0.80208 1.18528 1.20072 1.18721 1.20654 0.97897 0.92458 1.14236 1.20269 0.92308 0.96707 0.97845 1.17811 0.92429 0.89442 1.22901 1.19215 0.90345 0.93142 0.89490 1.21179 1.01780 0.93387 1.00087 1.20987 0.92361 0.97216 0.95645 1.18593 1.03054 0.92588 1.02637 1.20782 0.80966 0.83832 0.77558 1.90958 1.30367 1.80106 1.37852 1.84570 1.63326 1.28544 1.56421 1.20922 0.92240 0.94484 0.91961 1.98390 1.49453 1.96355 1.57544 1.21325 0.97656 0.95640 1.00986 0.92275 0.92637 0.92838 0.86163 0.90231 0.88619 0.88973 0.84868 0.84449 0.73254 0.84122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 8.43 36.00 0.30 -1.66 16 2 C -0.04 -0.84 5.83 -104.69 -0.61 -1.45 16 3 C -0.17 -4.03 8.26 -39.27 -0.32 -4.35 16 4 C 0.12 3.00 5.57 -106.80 -0.60 2.40 16 5 C -0.44 -10.79 9.03 -37.85 -0.34 -11.14 16 6 H 0.08 1.91 7.91 -52.48 -0.42 1.50 16 7 C 0.07 1.70 5.13 -17.32 -0.09 1.61 16 8 N -0.77 -18.35 10.96 55.56 0.61 -17.75 16 9 Si 0.91 17.10 29.60 -169.99 -5.03 12.07 16 10 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 11 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 12 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 13 C -0.23 -5.23 9.73 -39.28 -0.38 -5.61 16 14 C -0.05 -1.08 9.42 -39.65 -0.37 -1.46 16 15 C -0.22 -4.52 5.49 -104.64 -0.57 -5.09 16 16 C 0.08 1.36 4.71 -104.83 -0.49 0.86 16 17 C -0.15 -2.17 9.42 -39.62 -0.37 -2.55 16 18 C -0.04 -0.59 9.55 -39.60 -0.38 -0.97 16 19 C -0.17 -2.47 5.88 -104.87 -0.62 -3.09 16 20 C 0.52 7.27 8.26 34.51 0.28 7.56 16 21 O -0.50 -8.06 14.74 -19.27 -0.28 -8.35 16 22 O -0.52 -5.25 12.66 -40.64 -0.51 -5.77 16 23 C 0.03 0.50 6.35 -39.10 -0.25 0.25 16 24 Cl -0.05 -0.74 26.01 -51.86 -1.35 -2.08 16 25 C -0.14 -2.28 7.66 -39.19 -0.30 -2.58 16 26 H 0.06 1.01 7.48 -51.93 -0.39 0.62 16 27 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 28 H 0.05 0.90 6.45 -51.93 -0.33 0.57 16 29 H 0.12 2.96 6.16 -52.49 -0.32 2.64 16 30 H 0.29 6.18 8.29 -40.82 -0.34 5.84 16 31 H 0.10 2.01 8.06 -52.49 -0.42 1.59 16 32 H 0.09 1.65 8.03 -52.49 -0.42 1.23 16 33 H 0.13 1.81 8.03 -52.48 -0.42 1.39 16 34 H 0.14 1.50 7.59 -52.48 -0.40 1.10 16 35 H 0.41 2.22 9.11 45.56 0.42 2.64 16 36 H 0.14 2.35 6.84 -52.48 -0.36 1.99 16 LS Contribution 326.06 15.07 4.91 4.91 Total: -1.00 -26.80 326.06 -9.39 -36.19 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -2.62 Total: 8.02 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: -5.11 Total: -27.26 kcal Atomic # 7 Polarization: -18.35 SS G_CDS: 0.61 Total: -17.75 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.80 Total: -14.12 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.35 Total: -2.08 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -26.80 -9.39 -36.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241350245.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.244 kcal (2) G-P(sol) polarization free energy of solvation -26.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds