Wall clock time and date at job start Tue Mar 31 2020 10:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36254 * 119.94174 * 2 1 4 4 C 1.40940 * 119.87944 * 180.29872 * 3 2 1 5 5 C 1.40981 * 120.10847 * 179.69407 * 4 3 2 6 6 H 1.08003 * 119.99902 * 204.69872 * 5 4 3 7 7 C 1.40096 * 120.00413 * 24.70496 * 5 4 3 8 8 N 1.30739 * 120.00226 * 17.91670 * 7 5 4 9 9 Si 1.86803 * 119.99961 * 197.92579 * 7 5 4 10 10 H 1.48501 * 109.47456 * 59.99302 * 9 7 5 11 11 H 1.48501 * 109.47088 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46529 * 299.99266 * 9 7 5 13 13 C 1.40965 * 119.77313 * 359.70999 * 4 3 2 14 14 C 1.36221 * 119.88189 * 0.02562 * 13 4 3 15 15 C 1.39979 * 119.94166 * 179.75783 * 2 1 3 16 16 C 1.47875 * 119.88464 * 359.97438 * 15 2 1 17 17 C 1.39792 * 119.98184 * 129.72395 * 16 15 2 18 18 C 1.36523 * 120.17397 * 180.02562 * 17 16 15 19 19 C 1.39854 * 120.13173 * 359.97438 * 18 17 16 20 20 C 1.47511 * 120.01677 * 180.02562 * 19 18 17 21 21 O 1.21505 * 119.99769 * 180.02562 * 20 19 18 22 22 O 1.34756 * 120.00050 * 0.02562 * 20 19 18 23 23 C 1.39948 * 119.96203 * 0.02933 * 19 18 17 24 24 Cl 1.73600 * 120.08595 * 179.97438 * 23 19 18 25 25 C 1.37811 * 119.82804 * 359.97438 * 23 19 18 26 26 H 1.08998 * 109.47134 * 270.23891 * 1 2 3 27 27 H 1.08993 * 109.47368 * 30.24637 * 1 2 3 28 28 H 1.09004 * 109.47209 * 150.24545 * 1 2 3 29 29 H 1.07995 * 120.05436 * 0.02562 * 3 2 1 30 30 H 0.96994 * 120.00483 * 180.02562 * 8 7 5 31 31 H 1.08000 * 120.05686 * 179.97438 * 13 4 3 32 32 H 1.07997 * 119.93852 * 179.97438 * 14 13 4 33 33 H 1.08008 * 119.91652 * 359.72713 * 17 16 15 34 34 H 1.08007 * 119.93454 * 179.97438 * 18 17 16 35 35 H 0.96702 * 116.99280 * 179.97438 * 22 20 19 36 36 H 1.08007 * 120.06581 * 179.97438 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1870 1.1807 0.0000 4 6 3.5964 1.1792 -0.0064 5 6 4.3049 2.3980 -0.0129 6 1 5.3092 2.4367 -0.4084 7 6 3.7064 3.5590 0.4937 8 7 2.6635 3.4684 1.2769 9 14 4.3984 5.2364 0.0500 10 1 4.3468 5.4194 -1.4228 11 1 3.5913 6.2948 0.7085 12 1 5.8070 5.3284 0.5112 13 6 4.2951 -0.0452 -0.0065 14 6 3.6056 -1.2200 -0.0010 15 6 2.2056 -1.2130 0.0051 16 6 1.4624 -2.4913 0.0111 17 6 1.7799 -3.4883 -0.9159 18 6 1.0959 -4.6699 -0.9142 19 6 0.0743 -4.8884 0.0156 20 6 -0.6627 -6.1662 0.0155 21 8 -1.5505 -6.3554 0.8233 22 8 -0.3515 -7.1235 -0.8804 23 6 -0.2482 -3.8941 0.9461 24 17 -1.5161 -4.1616 2.1014 25 6 0.4432 -2.7020 0.9430 26 1 -0.3633 0.0043 1.0276 27 1 -0.3634 0.8877 -0.5176 28 1 -0.3634 -0.8922 -0.5100 29 1 1.6470 2.1159 0.0004 30 1 2.2489 4.2722 1.6273 31 1 5.3750 -0.0517 -0.0118 32 1 4.1400 -2.1585 -0.0016 33 1 2.5652 -3.3217 -1.6385 34 1 1.3441 -5.4374 -1.6325 35 1 -0.8619 -7.9439 -0.8412 36 1 0.1972 -1.9318 1.6591 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241350245.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:46 Heat of formation + Delta-G solvation = -73.579035 kcal Electronic energy + Delta-G solvation = -22606.463115 eV Core-core repulsion = 19044.988560 eV Total energy + Delta-G solvation = -3561.474554 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.065 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.43503 -40.37326 -39.01655 -37.50063 -36.92157 -35.86107 -33.77519 -32.85932 -31.85273 -30.67866 -27.66901 -27.50342 -25.04041 -23.69554 -22.96466 -21.84186 -21.34878 -19.15191 -19.00552 -18.48130 -17.45695 -17.02081 -16.64005 -16.38692 -15.85046 -15.60965 -15.45352 -15.15401 -14.76231 -14.35536 -14.29423 -14.15565 -13.72434 -13.61546 -13.29007 -13.06108 -12.80727 -12.75726 -12.62208 -12.48975 -12.44651 -12.34229 -12.26425 -11.98068 -11.49212 -11.33060 -11.07779 -10.98956 -10.09278 -9.86283 -9.26934 -9.04713 -8.69175 -6.35649 -0.53563 0.22776 0.85387 1.06394 1.19616 1.38332 1.44981 1.50269 1.64786 2.07447 2.17874 2.57582 2.77484 3.65204 3.71901 3.87497 4.07299 4.24419 4.33852 4.36943 4.38499 4.56514 4.67844 4.81423 4.88636 4.96937 5.06854 5.10940 5.11201 5.18946 5.29775 5.45680 5.52894 5.61419 5.66350 5.72659 6.00765 6.10164 6.21491 6.34359 6.65283 6.87751 7.00496 7.02915 8.24140 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.028712 B = 0.003031 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.963813 B = 9237.141874 C = 9907.083781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.050 4.050 3 C -0.193 4.193 4 C 0.092 3.908 5 C -0.488 4.488 6 H 0.080 0.920 7 C 0.037 3.963 8 N -0.810 5.810 9 Si 0.981 3.019 10 H -0.260 1.260 11 H -0.268 1.268 12 H -0.259 1.259 13 C -0.250 4.250 14 C -0.056 4.056 15 C -0.212 4.212 16 C 0.056 3.944 17 C -0.136 4.136 18 C -0.028 4.028 19 C -0.163 4.163 20 C 0.530 3.470 21 O -0.528 6.528 22 O -0.502 6.502 23 C 0.019 3.981 24 Cl -0.048 7.048 25 C -0.136 4.136 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.102 0.898 30 H 0.291 0.709 31 H 0.100 0.900 32 H 0.122 0.878 33 H 0.150 0.850 34 H 0.172 0.828 35 H 0.433 0.567 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.294 -12.770 -4.230 14.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.050 4.050 3 C -0.213 4.213 4 C 0.089 3.911 5 C -0.516 4.516 6 H 0.098 0.902 7 C -0.180 4.180 8 N -0.434 5.434 9 Si 0.801 3.199 10 H -0.184 1.184 11 H -0.192 1.192 12 H -0.183 1.183 13 C -0.269 4.269 14 C -0.074 4.074 15 C -0.213 4.213 16 C 0.056 3.944 17 C -0.154 4.154 18 C -0.046 4.046 19 C -0.165 4.165 20 C 0.375 3.625 21 O -0.419 6.419 22 O -0.316 6.316 23 C -0.008 4.008 24 Cl -0.019 7.019 25 C -0.155 4.155 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.120 0.880 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.140 0.860 33 H 0.168 0.832 34 H 0.190 0.810 35 H 0.295 0.705 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.603 -12.361 -3.769 13.718 hybrid contribution -0.142 0.595 0.402 0.732 sum -4.745 -11.766 -3.367 13.125 Atomic orbital electron populations 1.20781 0.91551 1.01830 1.01653 1.19588 0.95502 0.92451 0.97456 1.20825 0.94302 0.96478 1.09679 1.18051 0.92735 0.93173 0.87145 1.19921 1.01911 0.93617 1.36120 0.90167 1.26813 0.94325 1.05058 0.91820 1.69822 1.18877 1.33266 1.21468 0.85263 0.79364 0.75490 0.79751 1.18390 1.19215 1.18268 1.20846 0.98382 0.92757 1.14906 1.20578 0.92724 0.97160 0.96923 1.18118 0.92647 0.90462 1.20109 1.19079 0.91209 0.92741 0.91386 1.21346 1.01797 0.92906 0.99341 1.21280 0.90830 0.97240 0.95275 1.18906 1.02889 0.92821 1.01917 1.20566 0.80292 0.84048 0.77614 1.90964 1.31343 1.80615 1.38974 1.84499 1.63328 1.29101 1.54682 1.20975 0.92500 0.94686 0.92617 1.98391 1.49499 1.96319 1.57690 1.21209 0.97529 0.95903 1.00867 0.91601 0.92445 0.91448 0.88000 0.89783 0.88138 0.86035 0.83212 0.81015 0.70493 0.84914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.64 8.43 71.23 0.60 -3.04 16 2 C -0.05 -2.14 5.83 -19.91 -0.12 -2.26 16 3 C -0.19 -9.63 8.26 22.47 0.19 -9.44 16 4 C 0.09 4.69 5.57 -21.28 -0.12 4.57 16 5 C -0.49 -24.97 9.03 23.39 0.21 -24.76 16 6 H 0.08 3.94 7.91 -2.91 -0.02 3.91 16 7 C 0.04 1.77 5.13 85.31 0.44 2.21 16 8 N -0.81 -40.38 10.96 21.85 0.24 -40.14 16 9 Si 0.98 36.18 29.60 68.60 2.03 38.21 16 10 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 11 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 12 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 13 C -0.25 -11.47 9.73 22.47 0.22 -11.25 16 14 C -0.06 -2.24 9.42 22.23 0.21 -2.03 16 15 C -0.21 -8.38 5.49 -19.88 -0.11 -8.49 16 16 C 0.06 1.82 4.71 -20.00 -0.09 1.73 16 17 C -0.14 -3.53 9.42 22.24 0.21 -3.32 16 18 C -0.03 -0.63 9.55 22.26 0.21 -0.42 16 19 C -0.16 -4.26 5.88 -20.03 -0.12 -4.38 16 20 C 0.53 12.73 8.26 70.27 0.58 13.31 16 21 O -0.53 -15.43 14.74 19.82 0.29 -15.13 16 22 O -0.50 -7.80 12.66 -56.67 -0.72 -8.51 16 23 C 0.02 0.58 6.35 22.58 0.14 0.72 16 24 Cl -0.05 -1.45 26.01 -2.72 -0.07 -1.52 16 25 C -0.14 -4.30 7.66 22.52 0.17 -4.13 16 26 H 0.07 2.25 7.48 -2.39 -0.02 2.24 16 27 H 0.06 2.00 8.08 -2.39 -0.02 1.98 16 28 H 0.07 2.19 6.45 -2.39 -0.02 2.18 16 29 H 0.10 5.35 6.16 -2.91 -0.02 5.33 16 30 H 0.29 13.14 8.29 -92.71 -0.77 12.37 16 31 H 0.10 4.36 8.06 -2.91 -0.02 4.33 16 32 H 0.12 4.07 8.03 -2.91 -0.02 4.05 16 33 H 0.15 3.43 8.03 -2.91 -0.02 3.41 16 34 H 0.17 2.71 7.59 -2.91 -0.02 2.69 16 35 H 0.43 2.66 9.11 -74.06 -0.67 1.98 16 36 H 0.13 4.35 6.84 -2.91 -0.02 4.33 16 Total: -1.00 -60.06 326.06 4.87 -55.19 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.47 Total: 22.89 kcal Atomic # 6 Polarization: -53.61 SS G_CDS: 2.63 Total: -50.98 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.24 Total: -40.14 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.43 Total: -23.65 kcal Atomic # 14 Polarization: 36.18 SS G_CDS: 2.03 Total: 38.21 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.07 Total: -1.52 kcal Total: -60.06 4.87 -55.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241350245.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.386 kcal (2) G-P(sol) polarization free energy of solvation -60.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds