Wall clock time and date at job start Tue Mar 31 2020 10:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86799 * 119.99991 * 2 1 4 4 H 1.48504 * 109.46575 * 269.99629 * 3 2 1 5 5 H 1.48496 * 109.47198 * 29.99705 * 3 2 1 6 6 H 1.48498 * 109.46946 * 149.99910 * 3 2 1 7 7 C 1.38626 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00345 * 359.97438 * 7 2 1 9 9 O 1.34813 * 119.99801 * 180.02562 * 7 2 1 10 10 C 1.35616 * 117.00039 * 174.93391 * 9 7 2 11 11 C 1.38680 * 120.13897 * 5.59642 * 10 9 7 12 12 C 1.38340 * 120.05159 * 180.02562 * 11 10 9 13 13 F 1.35105 * 119.83767 * 179.97438 * 12 11 10 14 14 C 1.38747 * 120.32914 * 359.97438 * 12 11 10 15 15 C 1.37872 * 120.27533 * 0.03314 * 14 12 11 16 16 C 1.39578 * 119.94581 * 359.66948 * 15 14 12 17 17 C 1.47641 * 120.16661 * 180.30034 * 16 15 14 18 18 C 1.35563 * 125.08892 * 310.01925 * 17 16 15 19 19 C 1.46456 * 106.08880 * 179.89447 * 18 17 16 20 20 C 1.39609 * 134.15760 * 180.02562 * 19 18 17 21 21 C 1.37896 * 119.57733 * 180.32062 * 20 19 18 22 22 F 1.35096 * 119.89461 * 180.02562 * 21 20 19 23 23 C 1.38962 * 120.21480 * 359.97438 * 21 20 19 24 24 C 1.37865 * 120.70195 * 0.04751 * 23 21 20 25 25 C 1.38862 * 120.03217 * 359.94991 * 24 23 21 26 26 O 1.34755 * 125.09350 * 130.32538 * 17 16 15 27 27 H 0.96999 * 120.00060 * 0.02562 * 1 2 3 28 28 H 1.07995 * 119.97466 * 359.97438 * 11 10 9 29 29 H 1.08005 * 119.86302 * 180.02562 * 14 12 11 30 30 H 1.07998 * 120.02620 * 179.97438 * 15 14 12 31 31 H 1.08007 * 126.96329 * 0.02562 * 18 17 16 32 32 H 1.08003 * 120.21457 * 0.34483 * 20 19 18 33 33 H 1.08008 * 119.64836 * 180.02562 * 23 21 20 34 34 H 1.08006 * 119.98717 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 2.4972 2.0463 -1.4002 5 1 1.4472 2.6527 0.7000 6 1 3.5472 1.4401 0.7001 7 6 2.0088 -1.2006 0.0005 8 1 1.4688 -2.1359 0.0014 9 8 3.3569 -1.2006 0.0011 10 6 3.9726 -2.4042 0.1083 11 6 3.2252 -3.5723 0.0944 12 6 3.8550 -4.7991 0.2044 13 9 3.1226 -5.9343 0.1909 14 6 5.2351 -4.8695 0.3285 15 6 5.9913 -3.7167 0.3440 16 6 5.3683 -2.4731 0.2276 17 6 6.1740 -1.2360 0.2369 18 6 7.1194 -0.9287 1.1586 19 6 7.6533 0.3792 0.7718 20 6 8.6298 1.2258 1.2998 21 6 8.8960 2.4281 0.6792 22 9 9.8400 3.2520 1.1842 23 6 8.1971 2.7945 -0.4647 24 6 7.2304 1.9665 -0.9944 25 6 6.9465 0.7513 -0.3855 26 8 6.0755 -0.2405 -0.6660 27 1 -0.4850 0.8400 -0.0004 28 1 2.1506 -3.5242 -0.0016 29 1 5.7190 -5.8313 0.4135 30 1 7.0652 -3.7762 0.4413 31 1 7.4200 -1.5279 2.0054 32 1 9.1736 0.9408 2.1883 33 1 8.4133 3.7382 -0.9436 34 1 6.6940 2.2630 -1.8837 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242707174.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:49 Heat of formation + Delta-G solvation = -60.909679 kcal Electronic energy + Delta-G solvation = -24961.638917 eV Core-core repulsion = 20848.917067 eV Total energy + Delta-G solvation = -4112.721850 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.070 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.90193 -48.54323 -42.21185 -39.43582 -37.51807 -36.77289 -32.94534 -32.68367 -31.14759 -29.95791 -29.74428 -27.96115 -25.60926 -23.76486 -22.53353 -22.20628 -21.48580 -20.81010 -18.42174 -18.17160 -17.62174 -17.38896 -16.64505 -16.14825 -15.72199 -15.53219 -15.38480 -15.28130 -15.22548 -14.34089 -14.25941 -14.09616 -13.85667 -13.52040 -13.39361 -13.21030 -12.94464 -12.52392 -12.49639 -12.43580 -11.84810 -11.66458 -11.46300 -11.01505 -10.99700 -10.86461 -10.44660 -10.13137 -9.80617 -9.13270 -8.72274 -8.36453 -8.12502 -7.56401 -6.68763 -4.36007 0.71949 1.18103 1.41828 1.81845 2.56958 2.88071 3.09539 3.12366 3.28693 3.54873 3.98676 4.04364 4.10939 4.33680 4.46766 4.65354 4.70825 4.83918 4.93631 5.15019 5.19582 5.25152 5.34751 5.46389 5.69530 5.79176 5.81807 5.93528 6.02761 6.03795 6.16880 6.34998 6.45131 6.55890 6.59711 6.66260 6.75652 7.20755 7.33857 7.46185 7.70920 8.63483 9.18085 10.36642 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.011457 B = 0.005152 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.242873 B = 5433.756147 C = 7573.039671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.073 3.927 3 Si 0.899 3.101 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.255 1.255 7 C -0.395 4.395 8 H 0.113 0.887 9 O -0.183 6.183 10 C 0.204 3.796 11 C -0.259 4.259 12 C 0.161 3.839 13 F -0.144 7.144 14 C -0.245 4.245 15 C -0.009 4.009 16 C -0.143 4.143 17 C 0.143 3.857 18 C -0.224 4.224 19 C -0.093 4.093 20 C -0.113 4.113 21 C 0.078 3.922 22 F -0.141 7.141 23 C -0.138 4.138 24 C -0.073 4.073 25 C 0.041 3.959 26 O -0.174 6.174 27 H 0.285 0.715 28 H 0.152 0.848 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.161 0.839 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.491 -0.136 0.449 14.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.133 4.133 3 Si 0.724 3.276 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.179 1.179 7 C -0.470 4.470 8 H 0.130 0.870 9 O -0.085 6.085 10 C 0.148 3.852 11 C -0.279 4.279 12 C 0.141 3.859 13 F -0.122 7.122 14 C -0.264 4.264 15 C -0.028 4.028 16 C -0.144 4.144 17 C 0.095 3.905 18 C -0.243 4.243 19 C -0.094 4.094 20 C -0.132 4.132 21 C 0.059 3.941 22 F -0.120 7.120 23 C -0.157 4.157 24 C -0.091 4.091 25 C -0.007 4.007 26 O -0.074 6.074 27 H 0.095 0.905 28 H 0.169 0.831 29 H 0.148 0.852 30 H 0.151 0.849 31 H 0.178 0.822 32 H 0.156 0.844 33 H 0.162 0.838 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 14.136 0.267 0.217 14.140 hybrid contribution 0.047 0.605 0.187 0.635 sum 14.183 0.872 0.403 14.216 Atomic orbital electron populations 1.69637 1.05637 1.29188 1.45021 1.24485 0.95036 0.99058 0.94757 0.86241 0.80646 0.81161 0.79567 1.19309 1.20349 1.17884 1.20867 0.76286 0.97080 1.52754 0.86999 1.83604 1.23186 1.25051 1.76629 1.18696 0.90011 0.85350 0.91174 1.21102 1.02494 0.90237 1.14030 1.17600 0.89063 0.81301 0.97929 1.91459 1.77751 1.49437 1.93568 1.20492 0.91686 0.99087 1.15150 1.20466 0.99066 0.89051 0.94184 1.16880 0.88962 0.89268 1.19332 1.20242 0.94649 0.87479 0.88112 1.22303 1.02500 0.96378 1.03156 1.19615 0.97877 0.95828 0.96107 1.20352 0.98924 0.92725 1.01228 1.17310 0.91379 0.89875 0.95569 1.91479 1.62424 1.71232 1.86879 1.20767 0.97513 1.01066 0.96328 1.19761 0.98453 0.89969 1.00960 1.19659 0.92605 0.91503 0.96947 1.84201 1.51170 1.25006 1.47038 0.90467 0.83091 0.85238 0.84905 0.82157 0.84408 0.83820 0.84092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.59 13.96 55.48 0.77 -22.81 16 2 C 0.07 1.96 5.49 -17.52 -0.10 1.86 16 3 Si 0.90 21.04 28.62 -169.99 -4.86 16.17 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.26 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.40 -10.50 9.94 30.88 0.31 -10.20 16 8 H 0.11 3.01 5.44 -52.49 -0.29 2.72 16 9 O -0.18 -4.57 7.89 0.51 0.00 -4.56 16 10 C 0.20 4.41 6.66 -38.66 -0.26 4.15 16 11 C -0.26 -5.25 9.13 -39.38 -0.36 -5.61 16 12 C 0.16 2.83 7.30 -39.36 -0.29 2.54 16 13 F -0.14 -2.47 17.26 2.25 0.04 -2.43 16 14 C -0.24 -3.67 10.01 -39.53 -0.40 -4.07 16 15 C -0.01 -0.14 9.66 -39.22 -0.38 -0.52 16 16 C -0.14 -2.64 5.79 -104.80 -0.61 -3.25 16 17 C 0.14 2.64 6.23 -36.70 -0.23 2.41 16 18 C -0.22 -3.55 10.93 -37.23 -0.41 -3.95 16 19 C -0.09 -1.48 6.38 -105.18 -0.67 -2.15 16 20 C -0.11 -1.54 10.08 -39.20 -0.40 -1.93 16 21 C 0.08 1.03 7.29 -39.44 -0.29 0.74 16 22 F -0.14 -1.81 17.26 2.25 0.04 -1.78 16 23 C -0.14 -1.70 9.99 -39.45 -0.39 -2.09 16 24 C -0.07 -1.03 10.06 -39.49 -0.40 -1.43 16 25 C 0.04 0.70 7.40 -38.45 -0.28 0.42 16 26 O -0.17 -3.43 10.43 2.68 0.03 -3.41 16 27 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.15 3.22 5.64 -52.49 -0.30 2.93 16 29 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 30 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 31 H 0.16 2.05 8.06 -52.48 -0.42 1.63 16 32 H 0.14 1.54 8.06 -52.48 -0.42 1.12 16 33 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 34 H 0.14 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 316.81 15.07 4.77 4.77 Total: -1.00 -28.13 316.81 -6.60 -34.73 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -2.25 Total: 2.39 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -5.14 Total: -23.07 kcal Atomic # 7 Polarization: -23.59 SS G_CDS: 0.77 Total: -22.81 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: 0.03 Total: -7.97 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.08 Total: -4.21 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.86 Total: 16.17 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.13 -6.60 -34.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242707174.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.182 kcal (2) G-P(sol) polarization free energy of solvation -28.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds