Wall clock time and date at job start Tue Mar 31 2020 11:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34719 * 116.99950 * 2 1 4 4 O 1.21468 * 119.99340 * 359.97438 * 3 2 1 5 5 C 1.47741 * 120.00232 * 180.02562 * 3 2 1 6 6 C 1.39693 * 120.08303 * 359.97438 * 5 3 2 7 7 C 1.38125 * 120.07638 * 179.97438 * 6 5 3 8 8 Cl 1.73597 * 119.87494 * 180.02562 * 7 6 5 9 9 C 1.38286 * 120.24952 * 359.97438 * 7 6 5 10 10 C 1.39393 * 120.16900 * 0.04630 * 9 7 6 11 11 C 1.48436 * 120.03825 * 179.97438 * 10 9 7 12 12 C 1.39710 * 119.99747 * 179.97438 * 11 10 9 13 13 C 1.38392 * 120.37906 * 179.97438 * 12 11 10 14 14 C 1.37709 * 120.38133 * 359.97438 * 13 12 11 15 15 C 1.40749 * 119.98598 * 0.02562 * 14 13 12 16 16 C 1.41422 * 120.18872 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00182 * 204.49049 * 16 15 14 18 18 C 1.39934 * 120.00226 * 24.49254 * 16 15 14 19 19 N 1.30826 * 119.99492 * 17.90747 * 18 16 15 20 20 Si 1.86796 * 120.00321 * 197.90229 * 18 16 15 21 21 H 1.48499 * 109.46876 * 60.00162 * 20 18 16 22 22 H 1.48503 * 109.47152 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47272 * 300.00069 * 20 18 16 24 24 C 1.38720 * 119.99577 * 359.97438 * 11 10 9 25 25 C 1.39081 * 119.92377 * 0.22916 * 10 9 7 26 26 H 1.08997 * 109.47416 * 59.99772 * 1 2 3 27 27 H 1.09003 * 109.46974 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47140 * 299.99665 * 1 2 3 29 29 H 1.07998 * 119.96496 * 359.97438 * 6 5 3 30 30 H 1.08002 * 119.91407 * 180.02562 * 9 7 6 31 31 H 1.08003 * 119.81557 * 0.02562 * 12 11 10 32 32 H 1.08005 * 119.81028 * 180.02562 * 13 12 11 33 33 H 1.08001 * 120.01127 * 180.02562 * 14 13 12 34 34 H 0.97007 * 119.99985 * 179.97438 * 19 18 16 35 35 H 1.07999 * 120.18859 * 359.73003 * 24 11 10 36 36 H 1.07995 * 120.13186 * 179.72681 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4019 2.2190 -0.0005 5 6 3.5390 1.2778 -0.0006 6 6 4.3015 0.1073 -0.0006 7 6 5.6809 0.1798 -0.0016 8 17 6.6234 -1.2780 -0.0023 9 6 6.3138 1.4093 -0.0033 10 6 5.5630 2.5838 -0.0028 11 6 6.2454 3.9020 -0.0040 12 6 5.4921 5.0785 -0.0041 13 6 6.1201 6.3117 -0.0046 14 6 7.4948 6.3932 -0.0045 15 6 8.2692 5.2179 -0.0044 16 6 9.6812 5.2966 -0.0038 17 1 10.2679 4.4768 -0.3914 18 6 10.3182 6.4365 0.4991 19 7 9.6642 7.2628 1.2744 20 14 12.1023 6.7782 0.0638 21 1 12.2352 6.9133 -1.4091 22 1 12.5388 8.0382 0.7174 23 1 12.9511 5.6550 0.5363 24 6 7.6312 3.9655 -0.0049 25 6 4.1737 2.5191 0.0040 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 3.8121 -0.8554 0.0003 30 1 7.3927 1.4597 -0.0045 31 1 4.4134 5.0255 -0.0029 32 1 5.5287 7.2155 -0.0043 33 1 7.9787 7.3588 -0.0045 34 1 10.1059 8.0529 1.6233 35 1 8.2165 3.0578 -0.0005 36 1 3.5887 3.4269 0.0088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244080800.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:59 Heat of formation + Delta-G solvation = -65.888457 kcal Electronic energy + Delta-G solvation = -22216.801309 eV Core-core repulsion = 18655.660243 eV Total energy + Delta-G solvation = -3561.141066 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.065 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.75145 -40.45574 -38.99109 -37.68160 -37.38323 -35.67920 -33.56559 -32.45887 -31.63808 -29.83683 -28.61567 -27.27242 -25.36310 -24.36905 -22.91221 -21.98335 -21.46426 -19.61017 -18.47034 -18.31321 -17.58115 -17.45003 -17.07870 -16.47710 -16.30145 -16.10136 -15.37430 -14.90469 -14.88654 -14.78174 -14.42083 -14.21216 -14.06135 -13.58494 -13.32696 -13.07122 -13.05417 -12.82127 -12.72515 -12.52071 -12.32258 -12.15610 -12.13209 -11.84550 -11.79047 -11.53254 -11.26128 -11.07804 -10.55669 -10.00254 -9.44143 -8.84856 -8.64283 -6.36064 -0.58963 -0.20615 0.95902 0.96133 0.99227 1.39230 1.45303 1.50713 1.56869 1.59622 2.20984 2.49963 2.82295 3.45952 3.57996 3.74715 3.89853 3.97350 4.05515 4.16309 4.31581 4.35643 4.46528 4.50855 4.64141 4.73845 4.86011 4.99799 5.02220 5.07276 5.09500 5.20862 5.26929 5.45204 5.49042 5.65736 5.94006 6.05156 6.12222 6.32036 6.56040 6.65459 6.91978 6.98460 8.32633 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.017072 B = 0.003247 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.747501 B = 8621.230475 C =10173.878518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.519 3.481 4 O -0.529 6.529 5 C -0.119 4.119 6 C -0.051 4.051 7 C -0.042 4.042 8 Cl -0.049 7.049 9 C -0.075 4.075 10 C -0.028 4.028 11 C -0.041 4.041 12 C -0.222 4.222 13 C -0.109 4.109 14 C -0.181 4.181 15 C 0.079 3.921 16 C -0.499 4.499 17 H 0.079 0.921 18 C 0.036 3.964 19 N -0.825 5.825 20 Si 0.980 3.020 21 H -0.261 1.261 22 H -0.269 1.269 23 H -0.259 1.259 24 C -0.215 4.215 25 C -0.052 4.052 26 H 0.064 0.936 27 H 0.139 0.861 28 H 0.064 0.936 29 H 0.173 0.827 30 H 0.143 0.857 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.288 0.712 35 H 0.109 0.891 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.898 -14.502 -1.971 18.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.267 6.267 3 C 0.365 3.635 4 O -0.420 6.420 5 C -0.120 4.120 6 C -0.070 4.070 7 C -0.069 4.069 8 Cl -0.020 7.020 9 C -0.093 4.093 10 C -0.028 4.028 11 C -0.042 4.042 12 C -0.241 4.241 13 C -0.127 4.127 14 C -0.200 4.200 15 C 0.077 3.923 16 C -0.528 4.528 17 H 0.097 0.903 18 C -0.179 4.179 19 N -0.451 5.451 20 Si 0.801 3.199 21 H -0.185 1.185 22 H -0.194 1.194 23 H -0.183 1.183 24 C -0.234 4.234 25 C -0.071 4.071 26 H 0.083 0.917 27 H 0.157 0.843 28 H 0.082 0.918 29 H 0.190 0.810 30 H 0.161 0.839 31 H 0.136 0.864 32 H 0.132 0.868 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.126 0.874 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.031 -14.154 -1.817 18.037 hybrid contribution 0.758 0.673 0.033 1.014 sum -10.273 -13.481 -1.784 17.043 Atomic orbital electron populations 1.23658 0.73837 1.06184 1.02803 1.86529 1.25550 1.30926 1.83693 1.21000 0.88631 0.81826 0.72056 1.90840 1.67080 1.37056 1.46993 1.18861 0.89430 0.94039 1.09703 1.21445 0.91086 0.99308 0.95139 1.20647 0.92059 0.87880 1.06274 1.98377 1.72314 1.34382 1.96950 1.21550 1.01619 0.90034 0.96110 1.18765 0.92358 0.92565 0.99099 1.18423 0.92887 0.91113 1.01732 1.20770 0.98452 0.91691 1.13153 1.20907 0.94472 0.97166 1.00148 1.21425 0.93171 0.98598 1.06825 1.17884 0.94071 0.91554 0.88824 1.19801 0.92002 1.03142 1.37866 0.90307 1.26731 1.04964 0.94404 0.91766 1.69866 1.40705 1.11702 1.22831 0.85280 0.76399 0.78607 0.79631 1.18536 1.19356 1.18289 1.21233 0.92974 0.96869 1.12359 1.21452 0.93558 0.97583 0.94470 0.91716 0.84320 0.91770 0.80994 0.83887 0.86414 0.86824 0.87884 0.90101 0.87352 0.84138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.35 -7.07 9.81 -56.29 -0.55 -7.62 16 3 C 0.52 13.61 7.90 70.33 0.56 14.17 16 4 O -0.53 -16.64 16.13 19.94 0.32 -16.31 16 5 C -0.12 -3.21 5.87 -20.13 -0.12 -3.33 16 6 C -0.05 -1.19 9.39 22.59 0.21 -0.97 16 7 C -0.04 -1.07 6.31 22.25 0.14 -0.93 16 8 Cl -0.05 -1.09 28.94 -2.72 -0.08 -1.17 16 9 C -0.07 -2.30 9.20 22.56 0.21 -2.09 16 10 C -0.03 -0.96 5.87 -20.08 -0.12 -1.08 16 11 C -0.04 -1.77 5.87 -20.09 -0.12 -1.89 16 12 C -0.22 -9.48 9.43 22.66 0.21 -9.27 16 13 C -0.11 -4.98 10.01 22.18 0.22 -4.76 16 14 C -0.18 -9.39 8.69 22.76 0.20 -9.20 16 15 C 0.08 4.17 5.57 -21.32 -0.12 4.05 16 16 C -0.50 -26.31 9.05 23.47 0.21 -26.10 16 17 H 0.08 3.97 7.91 -2.91 -0.02 3.95 16 18 C 0.04 1.81 5.14 85.25 0.44 2.24 16 19 N -0.83 -42.70 10.96 21.82 0.24 -42.46 16 20 Si 0.98 37.60 29.60 68.60 2.03 39.63 16 21 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 22 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 23 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 24 C -0.22 -10.15 9.17 22.95 0.21 -9.94 16 25 C -0.05 -1.66 8.97 22.76 0.20 -1.46 16 26 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.17 3.00 7.60 -2.91 -0.02 2.98 16 30 H 0.14 4.43 6.18 -2.91 -0.02 4.41 16 31 H 0.12 4.41 6.18 -2.91 -0.02 4.39 16 32 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 33 H 0.10 5.60 6.15 -2.91 -0.02 5.58 16 34 H 0.29 13.53 8.30 -92.70 -0.77 12.77 16 35 H 0.11 4.72 6.18 -2.91 -0.02 4.70 16 36 H 0.14 4.56 5.77 -2.91 -0.02 4.55 16 Total: -1.00 -60.23 330.47 6.63 -53.59 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 1.14 Total: 23.32 kcal Atomic # 6 Polarization: -52.51 SS G_CDS: 3.54 Total: -48.97 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.24 Total: -42.46 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.23 Total: -23.93 kcal Atomic # 14 Polarization: 37.60 SS G_CDS: 2.03 Total: 39.63 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal Total: -60.23 6.63 -53.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244080800.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.298 kcal (2) G-P(sol) polarization free energy of solvation -60.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds