Wall clock time and date at job start Tue Mar 31 2020 10:54:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.36241 * 120.05810 * 2 1
4 4 C 1.39988 * 120.11610 * 179.97438 * 3 2 1
5 5 C 1.47843 * 119.88530 * 180.02562 * 4 3 2
6 6 C 1.39758 * 120.00717 * 309.73267 * 5 4 3
7 7 C 1.36553 * 120.14975 * 179.68949 * 6 5 4
8 8 C 1.39829 * 120.15131 * 0.60984 * 7 6 5
9 9 C 1.47584 * 119.99921 * 179.69820 * 8 7 6
10 10 O 1.21501 * 119.99797 * 179.97438 * 9 8 7
11 11 O 1.34740 * 120.00369 * 359.97042 * 9 8 7
12 12 C 1.39795 * 119.99815 * 359.66345 * 8 7 6
13 13 C 1.37773 * 119.85365 * 0.03375 * 12 8 7
14 14 Cl 1.73599 * 120.07555 * 179.97438 * 13 12 8
15 15 C 1.40023 * 120.22929 * 0.03107 * 4 3 2
16 16 C 1.36208 * 120.11238 * 359.97438 * 15 4 3
17 17 C 1.40940 * 120.05950 * 179.97438 * 2 1 3
18 18 C 1.40978 * 120.11112 * 359.74874 * 17 2 1
19 19 H 1.08002 * 119.99802 * 329.63440 * 18 17 2
20 20 C 1.40082 * 120.00345 * 149.63782 * 18 17 2
21 21 N 1.30743 * 120.00093 * 162.26305 * 20 18 17
22 22 Si 1.86803 * 119.99572 * 342.27097 * 20 18 17
23 23 H 1.48496 * 109.47569 * 95.38888 * 22 20 18
24 24 H 1.48511 * 109.46841 * 215.38352 * 22 20 18
25 25 H 1.48495 * 109.47409 * 335.38189 * 22 20 18
26 26 H 1.08999 * 109.47105 * 270.02350 * 1 2 3
27 27 H 1.09002 * 109.46791 * 30.02038 * 1 2 3
28 28 H 1.08998 * 109.47032 * 150.01728 * 1 2 3
29 29 H 1.08001 * 119.94337 * 359.97438 * 3 2 1
30 30 H 1.08003 * 119.92083 * 359.97438 * 6 5 4
31 31 H 1.08004 * 119.92127 * 180.27725 * 7 6 5
32 32 H 0.96705 * 117.00412 * 180.02562 * 11 9 8
33 33 H 1.08007 * 120.06933 * 180.02562 * 12 8 7
34 34 H 1.07999 * 119.94547 * 179.97438 * 15 4 3
35 35 H 1.08004 * 120.05707 * 180.02562 * 16 15 4
36 36 H 0.97006 * 119.99936 * 180.02562 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1894 1.1792 0.0000
4 6 3.5893 1.1806 0.0005
5 6 4.3247 2.4632 0.0011
6 6 4.0015 3.4545 -0.9295
7 6 4.6746 4.6427 -0.9275
8 6 5.6987 4.8682 -0.0026
9 6 6.4284 6.1510 -0.0078
10 8 7.3180 6.3471 0.7962
11 8 6.1081 7.1047 -0.9041
12 6 6.0310 3.8787 0.9274
13 6 5.3478 2.6823 0.9295
14 17 5.7561 1.4494 2.0814
15 6 4.2955 -0.0285 0.0004
16 6 3.6227 -1.2128 0.0003
17 6 2.2130 -1.2198 0.0005
18 6 1.5118 -2.4428 0.0064
19 1 0.5449 -2.5086 0.4831
20 6 2.0690 -3.5728 -0.6059
21 7 1.6143 -4.7641 -0.3169
22 14 3.4620 -3.3774 -1.8351
23 1 4.7628 -3.5594 -1.1423
24 1 3.3244 -4.3978 -2.9054
25 1 3.4062 -2.0202 -2.4350
26 1 -0.3633 0.0004 1.0277
27 1 -0.3633 0.8898 -0.5142
28 1 -0.3633 -0.8901 -0.5136
29 1 1.6494 2.1145 -0.0004
30 1 3.2146 3.2822 -1.6489
31 1 4.4188 5.4079 -1.6455
32 1 6.6142 7.9280 -0.8690
33 1 6.8216 4.0519 1.6426
34 1 5.3755 -0.0221 0.0004
35 1 4.1683 -2.1449 0.0007
36 1 2.0005 -5.5466 -0.7407
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001245372514.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:54:05
Heat of formation + Delta-G solvation = -67.205113 kcal
Electronic energy + Delta-G solvation = -22614.778964 eV
Core-core repulsion = 19053.580804 eV
Total energy + Delta-G solvation = -3561.198160 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 316.065 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-40.46834 -39.11552 -37.82414 -36.21367 -36.13640 -34.05530 -32.56688 -31.41044
-30.79645 -29.65861 -26.57523 -25.65687 -23.57246 -22.61116 -21.73858 -20.88571
-19.63168 -18.26874 -17.62399 -17.53781 -16.11012 -15.73105 -15.41039 -15.26704
-14.82820 -14.34092 -13.94661 -13.71733 -13.69326 -13.25669 -13.03254 -12.83756
-12.68569 -12.26640 -11.79990 -11.74836 -11.53023 -11.47610 -11.27958 -11.21911
-10.96887 -10.91690 -10.78456 -10.42560 -10.28661 -9.91056 -9.65878 -9.38815
-8.97325 -8.65721 -7.77426 -7.45552 -7.18591 -4.65623 0.56454 1.29126
2.19533 2.32853 2.60198 2.65360 2.98452 3.00348 3.11135 3.19647
3.73050 3.82417 4.30200 4.80678 4.94207 5.01335 5.11817 5.24189
5.38975 5.69853 5.83286 5.90338 5.94757 6.13629 6.17007 6.18760
6.32297 6.38916 6.44249 6.51377 6.63942 6.68735 6.80114 6.81986
6.97891 7.34712 7.49692 7.57267 7.74080 7.75686 7.94204 8.13438
8.46813 8.57835 9.80956
Molecular weight = 316.07amu
Principal moments of inertia in cm(-1)
A = 0.021733 B = 0.003554 C = 0.003398
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1288.029615 B = 7875.535223 C = 8237.874210
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.089 4.089
2 C -0.186 4.186
3 C -0.044 4.044
4 C -0.224 4.224
5 C 0.069 3.931
6 C -0.135 4.135
7 C -0.050 4.050
8 C -0.158 4.158
9 C 0.533 3.467
10 O -0.522 6.522
11 O -0.513 6.513
12 C -0.037 4.037
13 C -0.066 4.066
14 Cl -0.054 7.054
15 C -0.034 4.034
16 C -0.241 4.241
17 C 0.105 3.895
18 C -0.423 4.423
19 H 0.098 0.902
20 C 0.082 3.918
21 N -0.791 5.791
22 Si 0.913 3.087
23 H -0.268 1.268
24 H -0.289 1.289
25 H -0.241 1.241
26 H 0.046 0.954
27 H 0.041 0.959
28 H 0.065 0.935
29 H 0.097 0.903
30 H 0.138 0.862
31 H 0.137 0.863
32 H 0.412 0.588
33 H 0.141 0.859
34 H 0.096 0.904
35 H 0.102 0.898
36 H 0.290 0.710
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.981 14.034 -2.377 15.080
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.187 4.187
3 C -0.062 4.062
4 C -0.225 4.225
5 C 0.068 3.932
6 C -0.153 4.153
7 C -0.068 4.068
8 C -0.160 4.160
9 C 0.379 3.621
10 O -0.412 6.412
11 O -0.325 6.325
12 C -0.056 4.056
13 C -0.093 4.093
14 Cl -0.025 7.025
15 C -0.053 4.053
16 C -0.260 4.260
17 C 0.101 3.899
18 C -0.450 4.450
19 H 0.115 0.885
20 C -0.139 4.139
21 N -0.413 5.413
22 Si 0.739 3.261
23 H -0.193 1.193
24 H -0.216 1.216
25 H -0.164 1.164
26 H 0.065 0.935
27 H 0.060 0.940
28 H 0.084 0.916
29 H 0.115 0.885
30 H 0.156 0.844
31 H 0.155 0.845
32 H 0.270 0.730
33 H 0.159 0.841
34 H 0.114 0.886
35 H 0.120 0.880
36 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 4.957 13.287 -2.074 14.332
hybrid contribution 1.073 0.281 -0.277 1.143
sum 6.030 13.568 -2.350 15.032
Atomic orbital electron populations
1.20451 0.92782 1.01036 1.00277 1.19404 0.94819 0.92466 1.12003
1.20225 0.92060 0.96438 0.97516 1.17847 0.92673 0.89680 1.22286
1.19205 0.90257 0.93971 0.89723 1.21056 1.01846 0.92916 0.99521
1.21118 0.92684 0.97044 0.95995 1.18690 1.02096 0.92510 1.02678
1.20814 0.80424 0.83840 0.77047 1.90881 1.30960 1.80426 1.38942
1.84571 1.63173 1.28550 1.56187 1.20947 0.97693 0.90332 0.96653
1.20915 1.00741 0.91473 0.96146 1.98371 1.92714 1.53305 1.58074
1.20392 0.97565 0.91796 0.95516 1.20682 0.94503 0.96404 1.14381
1.17683 0.91287 0.92744 0.88182 1.19655 1.05321 0.91210 1.28822
0.88457 1.26323 0.96893 0.94180 0.96547 1.69649 1.37748 0.99448
1.34458 0.86267 0.80116 0.80099 0.79654 1.19346 1.21611 1.16396
0.93544 0.93968 0.91590 0.88524 0.84408 0.84511 0.73012 0.84116
0.88552 0.88028 0.89963
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.64 9.40 36.01 0.34 -1.31 16
2 C -0.19 -3.94 5.90 -104.32 -0.62 -4.56 16
3 C -0.04 -0.85 9.07 -39.64 -0.36 -1.21 16
4 C -0.22 -4.31 5.13 -104.64 -0.54 -4.85 16
5 C 0.07 1.15 5.47 -104.78 -0.57 0.58 16
6 C -0.14 -1.88 9.43 -39.62 -0.37 -2.26 16
7 C -0.05 -0.61 9.55 -39.59 -0.38 -0.99 16
8 C -0.16 -2.11 5.88 -104.91 -0.62 -2.72 16
9 C 0.53 6.64 8.27 34.54 0.29 6.93 16
10 O -0.52 -7.81 17.12 -19.27 -0.33 -8.14 16
11 O -0.51 -4.57 12.66 -40.60 -0.51 -5.08 16
12 C -0.04 -0.54 9.37 -39.17 -0.37 -0.90 16
13 C -0.07 -1.05 6.28 -39.14 -0.25 -1.30 16
14 Cl -0.05 -0.88 25.95 -51.86 -1.35 -2.22 16
15 C -0.03 -0.71 8.09 -39.64 -0.32 -1.03 16
16 C -0.24 -5.46 7.10 -39.28 -0.28 -5.74 16
17 C 0.10 2.45 5.09 -106.80 -0.54 1.91 16
18 C -0.42 -10.50 8.50 -37.85 -0.32 -10.82 16
19 H 0.10 2.51 7.23 -52.49 -0.38 2.13 16
20 C 0.08 2.00 5.41 -17.32 -0.09 1.91 16
21 N -0.79 -19.62 13.92 55.55 0.77 -18.85 16
22 Si 0.91 19.57 24.52 -169.99 -4.17 15.40 16
23 H -0.27 -5.63 6.72 56.52 0.38 -5.25 16
24 H -0.29 -5.98 7.11 56.52 0.40 -5.57 16
25 H -0.24 -5.29 6.86 56.52 0.39 -4.91 16
26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16
27 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16
28 H 0.07 1.27 6.86 -51.93 -0.36 0.92 16
29 H 0.10 1.64 8.03 -52.49 -0.42 1.22 16
30 H 0.14 1.74 8.03 -52.48 -0.42 1.32 16
31 H 0.14 1.34 7.59 -52.48 -0.40 0.94 16
32 H 0.41 1.73 9.11 45.56 0.42 2.14 16
33 H 0.14 1.93 7.64 -52.48 -0.40 1.53 16
34 H 0.10 1.86 7.13 -52.49 -0.37 1.48 16
35 H 0.10 2.32 4.77 -52.48 -0.25 2.07 16
36 H 0.29 6.49 8.29 -40.82 -0.34 6.16 16
LS Contribution 323.70 15.07 4.88 4.88
Total: -1.00 -27.25 323.70 -8.31 -35.56
By element:
Atomic # 1 Polarization: 7.43 SS G_CDS: -2.60 Total: 4.83 kcal
Atomic # 6 Polarization: -21.37 SS G_CDS: -5.00 Total: -26.37 kcal
Atomic # 7 Polarization: -19.62 SS G_CDS: 0.77 Total: -18.85 kcal
Atomic # 8 Polarization: -12.38 SS G_CDS: -0.84 Total: -13.23 kcal
Atomic # 14 Polarization: 19.57 SS G_CDS: -4.17 Total: 15.40 kcal
Atomic # 17 Polarization: -0.88 SS G_CDS: -1.35 Total: -2.22 kcal
Total LS contribution 4.88 Total: 4.88 kcal
Total: -27.25 -8.31 -35.56 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001245372514.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.646 kcal
(2) G-P(sol) polarization free energy of solvation -27.253 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.898 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.559 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.205 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds