Wall clock time and date at job start Tue Mar 31 2020 10:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36241 * 120.05810 * 2 1 4 4 C 1.39988 * 120.11610 * 179.97438 * 3 2 1 5 5 C 1.47843 * 119.88530 * 180.02562 * 4 3 2 6 6 C 1.39758 * 120.00717 * 309.73267 * 5 4 3 7 7 C 1.36553 * 120.14975 * 179.68949 * 6 5 4 8 8 C 1.39829 * 120.15131 * 0.60984 * 7 6 5 9 9 C 1.47584 * 119.99921 * 179.69820 * 8 7 6 10 10 O 1.21501 * 119.99797 * 179.97438 * 9 8 7 11 11 O 1.34740 * 120.00369 * 359.97042 * 9 8 7 12 12 C 1.39795 * 119.99815 * 359.66345 * 8 7 6 13 13 C 1.37773 * 119.85365 * 0.03375 * 12 8 7 14 14 Cl 1.73599 * 120.07555 * 179.97438 * 13 12 8 15 15 C 1.40023 * 120.22929 * 0.03107 * 4 3 2 16 16 C 1.36208 * 120.11238 * 359.97438 * 15 4 3 17 17 C 1.40940 * 120.05950 * 179.97438 * 2 1 3 18 18 C 1.40978 * 120.11112 * 359.74874 * 17 2 1 19 19 H 1.08002 * 119.99802 * 329.63440 * 18 17 2 20 20 C 1.40082 * 120.00345 * 149.63782 * 18 17 2 21 21 N 1.30743 * 120.00093 * 162.26305 * 20 18 17 22 22 Si 1.86803 * 119.99572 * 342.27097 * 20 18 17 23 23 H 1.48496 * 109.47569 * 95.38888 * 22 20 18 24 24 H 1.48511 * 109.46841 * 215.38352 * 22 20 18 25 25 H 1.48495 * 109.47409 * 335.38189 * 22 20 18 26 26 H 1.08999 * 109.47105 * 270.02350 * 1 2 3 27 27 H 1.09002 * 109.46791 * 30.02038 * 1 2 3 28 28 H 1.08998 * 109.47032 * 150.01728 * 1 2 3 29 29 H 1.08001 * 119.94337 * 359.97438 * 3 2 1 30 30 H 1.08003 * 119.92083 * 359.97438 * 6 5 4 31 31 H 1.08004 * 119.92127 * 180.27725 * 7 6 5 32 32 H 0.96705 * 117.00412 * 180.02562 * 11 9 8 33 33 H 1.08007 * 120.06933 * 180.02562 * 12 8 7 34 34 H 1.07999 * 119.94547 * 179.97438 * 15 4 3 35 35 H 1.08004 * 120.05707 * 180.02562 * 16 15 4 36 36 H 0.97006 * 119.99936 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1894 1.1792 0.0000 4 6 3.5893 1.1806 0.0005 5 6 4.3247 2.4632 0.0011 6 6 4.0015 3.4545 -0.9295 7 6 4.6746 4.6427 -0.9275 8 6 5.6987 4.8682 -0.0026 9 6 6.4284 6.1510 -0.0078 10 8 7.3180 6.3471 0.7962 11 8 6.1081 7.1047 -0.9041 12 6 6.0310 3.8787 0.9274 13 6 5.3478 2.6823 0.9295 14 17 5.7561 1.4494 2.0814 15 6 4.2955 -0.0285 0.0004 16 6 3.6227 -1.2128 0.0003 17 6 2.2130 -1.2198 0.0005 18 6 1.5118 -2.4428 0.0064 19 1 0.5449 -2.5086 0.4831 20 6 2.0690 -3.5728 -0.6059 21 7 1.6143 -4.7641 -0.3169 22 14 3.4620 -3.3774 -1.8351 23 1 4.7628 -3.5594 -1.1423 24 1 3.3244 -4.3978 -2.9054 25 1 3.4062 -2.0202 -2.4350 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8901 -0.5136 29 1 1.6494 2.1145 -0.0004 30 1 3.2146 3.2822 -1.6489 31 1 4.4188 5.4079 -1.6455 32 1 6.6142 7.9280 -0.8690 33 1 6.8216 4.0519 1.6426 34 1 5.3755 -0.0221 0.0004 35 1 4.1683 -2.1449 0.0007 36 1 2.0005 -5.5466 -0.7407 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245372514.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:05 Heat of formation + Delta-G solvation = -67.205113 kcal Electronic energy + Delta-G solvation = -22614.778964 eV Core-core repulsion = 19053.580804 eV Total energy + Delta-G solvation = -3561.198160 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.065 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.46834 -39.11552 -37.82414 -36.21367 -36.13640 -34.05530 -32.56688 -31.41044 -30.79645 -29.65861 -26.57523 -25.65687 -23.57246 -22.61116 -21.73858 -20.88571 -19.63168 -18.26874 -17.62399 -17.53781 -16.11012 -15.73105 -15.41039 -15.26704 -14.82820 -14.34092 -13.94661 -13.71733 -13.69326 -13.25669 -13.03254 -12.83756 -12.68569 -12.26640 -11.79990 -11.74836 -11.53023 -11.47610 -11.27958 -11.21911 -10.96887 -10.91690 -10.78456 -10.42560 -10.28661 -9.91056 -9.65878 -9.38815 -8.97325 -8.65721 -7.77426 -7.45552 -7.18591 -4.65623 0.56454 1.29126 2.19533 2.32853 2.60198 2.65360 2.98452 3.00348 3.11135 3.19647 3.73050 3.82417 4.30200 4.80678 4.94207 5.01335 5.11817 5.24189 5.38975 5.69853 5.83286 5.90338 5.94757 6.13629 6.17007 6.18760 6.32297 6.38916 6.44249 6.51377 6.63942 6.68735 6.80114 6.81986 6.97891 7.34712 7.49692 7.57267 7.74080 7.75686 7.94204 8.13438 8.46813 8.57835 9.80956 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.021733 B = 0.003554 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.029615 B = 7875.535223 C = 8237.874210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.186 4.186 3 C -0.044 4.044 4 C -0.224 4.224 5 C 0.069 3.931 6 C -0.135 4.135 7 C -0.050 4.050 8 C -0.158 4.158 9 C 0.533 3.467 10 O -0.522 6.522 11 O -0.513 6.513 12 C -0.037 4.037 13 C -0.066 4.066 14 Cl -0.054 7.054 15 C -0.034 4.034 16 C -0.241 4.241 17 C 0.105 3.895 18 C -0.423 4.423 19 H 0.098 0.902 20 C 0.082 3.918 21 N -0.791 5.791 22 Si 0.913 3.087 23 H -0.268 1.268 24 H -0.289 1.289 25 H -0.241 1.241 26 H 0.046 0.954 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.412 0.588 33 H 0.141 0.859 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.981 14.034 -2.377 15.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.187 4.187 3 C -0.062 4.062 4 C -0.225 4.225 5 C 0.068 3.932 6 C -0.153 4.153 7 C -0.068 4.068 8 C -0.160 4.160 9 C 0.379 3.621 10 O -0.412 6.412 11 O -0.325 6.325 12 C -0.056 4.056 13 C -0.093 4.093 14 Cl -0.025 7.025 15 C -0.053 4.053 16 C -0.260 4.260 17 C 0.101 3.899 18 C -0.450 4.450 19 H 0.115 0.885 20 C -0.139 4.139 21 N -0.413 5.413 22 Si 0.739 3.261 23 H -0.193 1.193 24 H -0.216 1.216 25 H -0.164 1.164 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.156 0.844 31 H 0.155 0.845 32 H 0.270 0.730 33 H 0.159 0.841 34 H 0.114 0.886 35 H 0.120 0.880 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.957 13.287 -2.074 14.332 hybrid contribution 1.073 0.281 -0.277 1.143 sum 6.030 13.568 -2.350 15.032 Atomic orbital electron populations 1.20451 0.92782 1.01036 1.00277 1.19404 0.94819 0.92466 1.12003 1.20225 0.92060 0.96438 0.97516 1.17847 0.92673 0.89680 1.22286 1.19205 0.90257 0.93971 0.89723 1.21056 1.01846 0.92916 0.99521 1.21118 0.92684 0.97044 0.95995 1.18690 1.02096 0.92510 1.02678 1.20814 0.80424 0.83840 0.77047 1.90881 1.30960 1.80426 1.38942 1.84571 1.63173 1.28550 1.56187 1.20947 0.97693 0.90332 0.96653 1.20915 1.00741 0.91473 0.96146 1.98371 1.92714 1.53305 1.58074 1.20392 0.97565 0.91796 0.95516 1.20682 0.94503 0.96404 1.14381 1.17683 0.91287 0.92744 0.88182 1.19655 1.05321 0.91210 1.28822 0.88457 1.26323 0.96893 0.94180 0.96547 1.69649 1.37748 0.99448 1.34458 0.86267 0.80116 0.80099 0.79654 1.19346 1.21611 1.16396 0.93544 0.93968 0.91590 0.88524 0.84408 0.84511 0.73012 0.84116 0.88552 0.88028 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.64 9.40 36.01 0.34 -1.31 16 2 C -0.19 -3.94 5.90 -104.32 -0.62 -4.56 16 3 C -0.04 -0.85 9.07 -39.64 -0.36 -1.21 16 4 C -0.22 -4.31 5.13 -104.64 -0.54 -4.85 16 5 C 0.07 1.15 5.47 -104.78 -0.57 0.58 16 6 C -0.14 -1.88 9.43 -39.62 -0.37 -2.26 16 7 C -0.05 -0.61 9.55 -39.59 -0.38 -0.99 16 8 C -0.16 -2.11 5.88 -104.91 -0.62 -2.72 16 9 C 0.53 6.64 8.27 34.54 0.29 6.93 16 10 O -0.52 -7.81 17.12 -19.27 -0.33 -8.14 16 11 O -0.51 -4.57 12.66 -40.60 -0.51 -5.08 16 12 C -0.04 -0.54 9.37 -39.17 -0.37 -0.90 16 13 C -0.07 -1.05 6.28 -39.14 -0.25 -1.30 16 14 Cl -0.05 -0.88 25.95 -51.86 -1.35 -2.22 16 15 C -0.03 -0.71 8.09 -39.64 -0.32 -1.03 16 16 C -0.24 -5.46 7.10 -39.28 -0.28 -5.74 16 17 C 0.10 2.45 5.09 -106.80 -0.54 1.91 16 18 C -0.42 -10.50 8.50 -37.85 -0.32 -10.82 16 19 H 0.10 2.51 7.23 -52.49 -0.38 2.13 16 20 C 0.08 2.00 5.41 -17.32 -0.09 1.91 16 21 N -0.79 -19.62 13.92 55.55 0.77 -18.85 16 22 Si 0.91 19.57 24.52 -169.99 -4.17 15.40 16 23 H -0.27 -5.63 6.72 56.52 0.38 -5.25 16 24 H -0.29 -5.98 7.11 56.52 0.40 -5.57 16 25 H -0.24 -5.29 6.86 56.52 0.39 -4.91 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 28 H 0.07 1.27 6.86 -51.93 -0.36 0.92 16 29 H 0.10 1.64 8.03 -52.49 -0.42 1.22 16 30 H 0.14 1.74 8.03 -52.48 -0.42 1.32 16 31 H 0.14 1.34 7.59 -52.48 -0.40 0.94 16 32 H 0.41 1.73 9.11 45.56 0.42 2.14 16 33 H 0.14 1.93 7.64 -52.48 -0.40 1.53 16 34 H 0.10 1.86 7.13 -52.49 -0.37 1.48 16 35 H 0.10 2.32 4.77 -52.48 -0.25 2.07 16 36 H 0.29 6.49 8.29 -40.82 -0.34 6.16 16 LS Contribution 323.70 15.07 4.88 4.88 Total: -1.00 -27.25 323.70 -8.31 -35.56 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -2.60 Total: 4.83 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -5.00 Total: -26.37 kcal Atomic # 7 Polarization: -19.62 SS G_CDS: 0.77 Total: -18.85 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.84 Total: -13.23 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.17 Total: 15.40 kcal Atomic # 17 Polarization: -0.88 SS G_CDS: -1.35 Total: -2.22 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.25 -8.31 -35.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245372514.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.646 kcal (2) G-P(sol) polarization free energy of solvation -27.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds