Wall clock time and date at job start Tue Mar 31 2020 11:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86795 * 119.99812 * 2 1 4 4 H 1.48501 * 109.47443 * 270.00135 * 3 2 1 5 5 H 1.48509 * 109.47068 * 30.00534 * 3 2 1 6 6 H 1.48499 * 109.47004 * 150.00339 * 3 2 1 7 7 C 1.38657 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00379 * 359.97438 * 7 2 1 9 9 O 1.34812 * 119.99499 * 180.02562 * 7 2 1 10 10 C 1.35644 * 116.99886 * 185.05195 * 9 7 2 11 11 C 1.39060 * 119.92961 * 354.44567 * 10 9 7 12 12 C 1.37739 * 120.07599 * 180.02562 * 11 10 9 13 13 C 1.39667 * 119.92650 * 359.97426 * 12 11 10 14 14 C 1.47775 * 120.07396 * 179.97438 * 13 12 11 15 15 N 1.31059 * 125.12305 * 359.69223 * 14 13 12 16 16 C 1.35586 * 109.63320 * 179.86891 * 15 14 13 17 17 C 1.40588 * 107.21150 * 0.39109 * 16 15 14 18 18 C 1.38780 * 119.96177 * 179.79042 * 17 16 15 19 19 C 1.38098 * 119.88328 * 359.97438 * 18 17 16 20 20 F 1.35108 * 119.78123 * 180.02562 * 19 18 17 21 21 C 1.38948 * 120.43911 * 0.02562 * 19 18 17 22 22 C 1.37791 * 120.48023 * 0.02562 * 21 19 18 23 23 F 1.35104 * 120.11902 * 179.97438 * 22 21 19 24 24 N 1.37024 * 125.12545 * 180.02562 * 14 13 12 25 25 H 0.97001 * 126.39878 * 359.97155 * 24 14 13 26 26 C 1.39677 * 119.85720 * 0.25231 * 13 12 11 27 27 C 1.37742 * 119.92303 * 359.51662 * 26 13 12 28 28 H 0.96994 * 119.99934 * 359.97438 * 1 2 3 29 29 H 1.08007 * 119.96346 * 359.97438 * 11 10 9 30 30 H 1.08006 * 120.03795 * 179.97438 * 12 11 10 31 31 H 1.08000 * 120.05778 * 179.97438 * 18 17 16 32 32 H 1.08004 * 119.75691 * 180.02562 * 21 19 18 33 33 H 1.08003 * 120.03734 * 179.72093 * 26 13 12 34 34 H 1.08001 * 119.95982 * 180.20424 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4469 2.6526 0.7002 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1362 -0.0005 9 8 3.3569 -1.2008 0.0000 10 6 3.9728 -2.4046 -0.1070 11 6 3.2191 -3.5732 -0.0943 12 6 3.8414 -4.7972 -0.2022 13 6 5.2310 -4.8639 -0.3251 14 6 5.9021 -6.1755 -0.4405 15 7 5.2944 -7.3366 -0.4332 16 6 6.2084 -8.3300 -0.5605 17 6 7.4737 -7.7229 -0.6434 18 6 8.6112 -8.5067 -0.7762 19 6 8.4971 -9.8821 -0.8260 20 9 9.6059 -10.6433 -0.9547 21 6 7.2495 -10.4883 -0.7446 22 6 6.1092 -9.7260 -0.6136 23 9 4.8998 -10.3230 -0.5356 24 7 7.2540 -6.3611 -0.5648 25 1 7.9302 -5.6663 -0.5927 26 6 5.9857 -3.6886 -0.3328 27 6 5.3567 -2.4675 -0.2292 28 1 -0.4850 0.8400 0.0004 29 1 2.1445 -3.5209 0.0012 30 1 3.2554 -5.7044 -0.1918 31 1 9.5840 -8.0420 -0.8404 32 1 7.1730 -11.5649 -0.7842 33 1 7.0608 -3.7371 -0.4231 34 1 5.9394 -1.5582 -0.2384 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250643040.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:26 Heat of formation + Delta-G solvation = -20.704384 kcal Electronic energy + Delta-G solvation = -23896.216457 eV Core-core repulsion = 19817.530791 eV Total energy + Delta-G solvation = -4078.685667 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.076 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.20972 -49.01358 -42.21657 -39.41041 -37.44231 -36.46894 -33.29195 -32.68756 -30.87057 -30.64580 -29.79732 -28.18707 -25.66205 -23.58132 -23.08977 -22.33288 -21.82773 -20.53709 -18.95515 -18.37659 -17.96349 -17.30839 -16.98581 -16.35244 -16.32322 -15.78226 -15.50129 -15.22989 -14.96585 -14.95262 -14.54876 -14.22452 -14.07171 -13.92320 -13.57914 -13.02892 -12.62986 -12.51837 -12.40668 -12.20256 -12.03248 -11.58517 -11.31725 -11.02376 -10.97646 -10.80677 -10.37702 -10.21446 -9.63375 -9.20183 -8.84061 -8.59566 -8.37382 -7.38128 -6.66243 -4.30799 0.32546 0.91389 1.55918 1.90251 2.51436 2.80843 3.07999 3.11786 3.24037 3.33250 3.65154 3.89457 3.99949 4.03333 4.27988 4.49570 4.55322 4.65035 4.80470 4.87209 4.96217 5.23449 5.30634 5.42013 5.53757 5.62716 5.78067 5.85431 5.95453 6.06766 6.17789 6.43444 6.53507 6.65314 6.83415 6.99093 7.15075 7.27616 7.54903 7.72375 7.76280 8.66229 9.24046 10.39623 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.034626 B = 0.002454 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.437449 B =11404.922292 C =12198.881627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.392 4.392 8 H 0.113 0.887 9 O -0.199 6.199 10 C 0.176 3.824 11 C -0.227 4.227 12 C -0.009 4.009 13 C -0.151 4.151 14 C 0.380 3.620 15 N -0.489 5.489 16 C 0.020 3.980 17 C 0.092 3.908 18 C -0.153 4.153 19 C 0.132 3.868 20 F -0.130 7.130 21 C -0.199 4.199 22 C 0.179 3.821 23 F -0.120 7.120 24 N -0.598 5.598 25 H 0.427 0.573 26 C -0.048 4.048 27 C -0.192 4.192 28 H 0.284 0.716 29 H 0.142 0.858 30 H 0.129 0.871 31 H 0.141 0.859 32 H 0.153 0.847 33 H 0.112 0.888 34 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.312 -13.334 -1.415 21.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.467 4.467 8 H 0.130 0.870 9 O -0.101 6.101 10 C 0.120 3.880 11 C -0.246 4.246 12 C -0.030 4.030 13 C -0.155 4.155 14 C 0.119 3.881 15 N -0.209 5.209 16 C -0.101 4.101 17 C -0.020 4.020 18 C -0.176 4.176 19 C 0.111 3.889 20 F -0.109 7.109 21 C -0.221 4.221 22 C 0.158 3.842 23 F -0.098 7.098 24 N -0.209 5.209 25 H 0.267 0.733 26 C -0.069 4.069 27 C -0.211 4.211 28 H 0.095 0.905 29 H 0.160 0.840 30 H 0.147 0.853 31 H 0.159 0.841 32 H 0.171 0.829 33 H 0.130 0.870 34 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 15.236 -13.188 -1.311 20.194 hybrid contribution 1.331 0.864 -0.104 1.591 sum 16.568 -12.324 -1.415 20.697 Atomic orbital electron populations 1.69636 1.05704 1.29115 1.45362 1.24553 0.95100 0.99160 0.95110 0.86152 0.80366 0.81055 0.79229 1.19587 1.20454 1.18177 1.20900 0.76497 0.97060 1.52193 0.86984 1.83526 1.23107 1.26119 1.77311 1.19304 0.91693 0.85463 0.91494 1.21253 1.01636 0.91257 1.10487 1.20861 0.92170 0.97654 0.92269 1.17133 0.93396 0.86217 1.18766 1.21792 0.78324 0.94101 0.93865 1.70768 1.30020 0.95902 1.24202 1.18948 0.90191 0.92947 1.08026 1.18001 0.95162 0.84158 1.04691 1.19651 0.97500 0.91273 1.09142 1.16535 0.82095 0.87504 1.02810 1.91524 1.50707 1.75329 1.93330 1.20626 0.89784 1.01506 1.10183 1.16292 0.80631 0.86640 1.00648 1.91541 1.41926 1.83375 1.92974 1.43188 1.09213 1.05563 1.62967 0.73301 1.20475 0.97816 0.91019 0.97556 1.20029 0.91937 0.97597 1.11572 0.90541 0.84032 0.85321 0.84129 0.82931 0.86993 0.85688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.31 13.96 55.48 0.77 -22.54 16 2 C 0.07 1.74 5.49 -17.51 -0.10 1.64 16 3 Si 0.91 19.96 28.62 -169.99 -4.86 15.09 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.39 -10.14 9.94 30.89 0.31 -9.84 16 8 H 0.11 2.96 5.42 -52.49 -0.28 2.68 16 9 O -0.20 -4.73 8.58 0.43 0.00 -4.73 16 10 C 0.18 3.61 6.65 -38.97 -0.26 3.36 16 11 C -0.23 -4.46 9.15 -39.46 -0.36 -4.82 16 12 C -0.01 -0.16 9.67 -39.23 -0.38 -0.54 16 13 C -0.15 -2.38 5.88 -104.93 -0.62 -3.00 16 14 C 0.38 5.64 7.73 -154.49 -1.19 4.45 16 15 N -0.49 -8.11 10.83 -8.67 -0.09 -8.20 16 16 C 0.02 0.29 7.20 -84.64 -0.61 -0.32 16 17 C 0.09 1.10 7.29 -83.93 -0.61 0.49 16 18 C -0.15 -1.48 10.04 -39.43 -0.40 -1.87 16 19 C 0.13 1.31 7.29 -39.37 -0.29 1.02 16 20 F -0.13 -1.26 17.26 2.25 0.04 -1.22 16 21 C -0.20 -2.04 9.97 -39.48 -0.39 -2.43 16 22 C 0.18 2.32 7.34 -39.06 -0.29 2.04 16 23 F -0.12 -1.67 17.27 2.25 0.04 -1.63 16 24 N -0.60 -6.79 6.12 -8.44 -0.05 -6.85 16 25 H 0.43 3.33 8.00 -40.82 -0.33 3.00 16 26 C -0.05 -0.69 9.68 -39.23 -0.38 -1.07 16 27 C -0.19 -3.24 9.97 -39.45 -0.39 -3.63 16 28 H 0.28 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.14 2.92 5.62 -52.48 -0.29 2.62 16 30 H 0.13 2.16 7.80 -52.48 -0.41 1.75 16 31 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.15 1.20 8.06 -52.48 -0.42 0.78 16 33 H 0.11 1.14 7.09 -52.48 -0.37 0.77 16 34 H 0.13 1.90 8.06 -52.49 -0.42 1.47 16 LS Contribution 313.67 15.07 4.73 4.73 Total: -1.00 -28.32 313.67 -7.47 -35.79 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -2.09 Total: 4.09 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -5.96 Total: -14.53 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.63 Total: -37.59 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: 0.00 Total: -4.73 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.08 Total: -2.86 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.86 Total: 15.09 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -28.32 -7.47 -35.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250643040.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.089 kcal (2) G-P(sol) polarization free energy of solvation -28.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds