Wall clock time and date at job start Tue Mar 31 2020 11:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86795 * 119.99812 * 2 1 4 4 H 1.48501 * 109.47443 * 270.00135 * 3 2 1 5 5 H 1.48509 * 109.47068 * 30.00534 * 3 2 1 6 6 H 1.48499 * 109.47004 * 150.00339 * 3 2 1 7 7 C 1.38657 * 119.99679 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00379 * 359.97438 * 7 2 1 9 9 O 1.34812 * 119.99499 * 180.02562 * 7 2 1 10 10 C 1.35644 * 116.99886 * 185.05195 * 9 7 2 11 11 C 1.39060 * 119.92961 * 354.44567 * 10 9 7 12 12 C 1.37739 * 120.07599 * 180.02562 * 11 10 9 13 13 C 1.39667 * 119.92650 * 359.97426 * 12 11 10 14 14 C 1.47775 * 120.07396 * 179.97438 * 13 12 11 15 15 N 1.31059 * 125.12305 * 359.69223 * 14 13 12 16 16 C 1.35586 * 109.63320 * 179.86891 * 15 14 13 17 17 C 1.40588 * 107.21150 * 0.39109 * 16 15 14 18 18 C 1.38780 * 119.96177 * 179.79042 * 17 16 15 19 19 C 1.38098 * 119.88328 * 359.97438 * 18 17 16 20 20 F 1.35108 * 119.78123 * 180.02562 * 19 18 17 21 21 C 1.38948 * 120.43911 * 0.02562 * 19 18 17 22 22 C 1.37791 * 120.48023 * 0.02562 * 21 19 18 23 23 F 1.35104 * 120.11902 * 179.97438 * 22 21 19 24 24 N 1.37024 * 125.12545 * 180.02562 * 14 13 12 25 25 H 0.97001 * 126.39878 * 359.97155 * 24 14 13 26 26 C 1.39677 * 119.85720 * 0.25231 * 13 12 11 27 27 C 1.37742 * 119.92303 * 359.51662 * 26 13 12 28 28 H 0.96994 * 119.99934 * 359.97438 * 1 2 3 29 29 H 1.08007 * 119.96346 * 359.97438 * 11 10 9 30 30 H 1.08006 * 120.03795 * 179.97438 * 12 11 10 31 31 H 1.08000 * 120.05778 * 179.97438 * 18 17 16 32 32 H 1.08004 * 119.75691 * 180.02562 * 21 19 18 33 33 H 1.08003 * 120.03734 * 179.72093 * 26 13 12 34 34 H 1.08001 * 119.95982 * 180.20424 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4469 2.6526 0.7002 6 1 3.5471 1.4401 0.7000 7 6 2.0088 -1.2008 -0.0005 8 1 1.4688 -2.1362 -0.0005 9 8 3.3569 -1.2008 0.0000 10 6 3.9728 -2.4046 -0.1070 11 6 3.2191 -3.5732 -0.0943 12 6 3.8414 -4.7972 -0.2022 13 6 5.2310 -4.8639 -0.3251 14 6 5.9021 -6.1755 -0.4405 15 7 5.2944 -7.3366 -0.4332 16 6 6.2084 -8.3300 -0.5605 17 6 7.4737 -7.7229 -0.6434 18 6 8.6112 -8.5067 -0.7762 19 6 8.4971 -9.8821 -0.8260 20 9 9.6059 -10.6433 -0.9547 21 6 7.2495 -10.4883 -0.7446 22 6 6.1092 -9.7260 -0.6136 23 9 4.8998 -10.3230 -0.5356 24 7 7.2540 -6.3611 -0.5648 25 1 7.9302 -5.6663 -0.5927 26 6 5.9857 -3.6886 -0.3328 27 6 5.3567 -2.4675 -0.2292 28 1 -0.4850 0.8400 0.0004 29 1 2.1445 -3.5209 0.0012 30 1 3.2554 -5.7044 -0.1918 31 1 9.5840 -8.0420 -0.8404 32 1 7.1730 -11.5649 -0.7842 33 1 7.0608 -3.7371 -0.4231 34 1 5.9394 -1.5582 -0.2384 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250643040.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:25 Heat of formation + Delta-G solvation = -36.532386 kcal Electronic energy + Delta-G solvation = -23896.902811 eV Core-core repulsion = 19817.530791 eV Total energy + Delta-G solvation = -4079.372020 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 316.076 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.02884 -49.99632 -43.24772 -40.94850 -38.70356 -37.65467 -34.53383 -34.33120 -32.13683 -32.01707 -30.78920 -29.35353 -27.38988 -24.75572 -24.20249 -23.54713 -23.01743 -21.78669 -19.97196 -19.93546 -19.31202 -18.71646 -17.95106 -17.30825 -17.29612 -16.69564 -16.60559 -16.38101 -16.36573 -16.03214 -15.82902 -15.71382 -15.48821 -15.28842 -14.58125 -14.42010 -14.20192 -14.12258 -13.51495 -13.37639 -13.01903 -12.97744 -12.74981 -12.55647 -12.20799 -11.98461 -11.90222 -11.43937 -11.25509 -10.96398 -9.98508 -9.96058 -9.40229 -8.73855 -8.53659 -6.26829 -0.67833 0.01965 0.30911 0.47719 1.34410 1.36956 1.53461 1.55213 1.68856 2.26643 2.33059 2.68113 2.75560 2.91861 2.94708 3.08844 3.13679 3.58835 3.75585 3.88442 3.98491 4.02936 4.09862 4.35292 4.44814 4.58380 4.63986 4.73733 4.81848 4.85255 5.03788 5.13491 5.22219 5.39260 5.49963 5.60663 5.68933 5.76878 6.04628 6.25200 6.64391 6.78920 7.46905 8.57006 Molecular weight = 316.08amu Principal moments of inertia in cm(-1) A = 0.034626 B = 0.002454 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.437449 B =11404.922292 C =12198.881627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.012 3.988 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.255 1.255 7 C -0.404 4.404 8 H 0.084 0.916 9 O -0.227 6.227 10 C 0.147 3.853 11 C -0.239 4.239 12 C -0.021 4.021 13 C -0.125 4.125 14 C 0.364 3.636 15 N -0.522 5.522 16 C -0.018 4.018 17 C 0.099 3.901 18 C -0.136 4.136 19 C 0.140 3.860 20 F -0.123 7.123 21 C -0.182 4.182 22 C 0.156 3.844 23 F -0.134 7.134 24 N -0.575 5.575 25 H 0.446 0.554 26 C -0.030 4.030 27 C -0.183 4.183 28 H 0.287 0.713 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.178 0.822 32 H 0.176 0.824 33 H 0.170 0.830 34 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.758 -14.698 -1.870 26.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.187 4.187 3 Si 0.794 3.206 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.480 4.480 8 H 0.102 0.898 9 O -0.132 6.132 10 C 0.095 3.905 11 C -0.258 4.258 12 C -0.041 4.041 13 C -0.129 4.129 14 C 0.100 3.900 15 N -0.242 5.242 16 C -0.138 4.138 17 C -0.014 4.014 18 C -0.158 4.158 19 C 0.118 3.882 20 F -0.102 7.102 21 C -0.204 4.204 22 C 0.135 3.865 23 F -0.112 7.112 24 N -0.188 5.188 25 H 0.291 0.709 26 C -0.050 4.050 27 C -0.202 4.202 28 H 0.096 0.904 29 H 0.134 0.866 30 H 0.146 0.854 31 H 0.195 0.805 32 H 0.194 0.806 33 H 0.187 0.813 34 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 20.753 -14.596 -1.771 25.433 hybrid contribution 0.036 0.642 -0.014 0.643 sum 20.789 -13.954 -1.785 25.101 Atomic orbital electron populations 1.69731 1.07149 1.29931 1.48814 1.25358 0.95871 1.02448 0.95062 0.85187 0.79005 0.76977 0.79422 1.18929 1.19523 1.17926 1.20752 0.77876 0.96349 1.53011 0.89810 1.83489 1.21445 1.27335 1.80969 1.19881 0.93417 0.84794 0.92402 1.21181 1.00754 0.92438 1.11427 1.20881 0.93590 0.96623 0.92990 1.17357 0.92636 0.87781 1.15081 1.21365 0.79808 0.93070 0.95717 1.70641 1.32103 0.97197 1.24280 1.19294 0.91141 0.93411 1.09948 1.18124 0.94823 0.84167 1.04250 1.19956 0.98173 0.90897 1.06779 1.16571 0.81980 0.87788 1.01814 1.91559 1.50267 1.75212 1.93138 1.20866 0.89076 1.02585 1.07866 1.16578 0.81004 0.86589 1.02305 1.91503 1.42901 1.83501 1.93312 1.42951 1.08191 1.05991 1.61649 0.70927 1.20994 1.00416 0.88920 0.94639 1.20440 0.90193 0.99806 1.09757 0.90353 0.86604 0.85430 0.80494 0.80636 0.81261 0.83186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.88 13.96 21.61 0.30 -52.58 16 2 C 0.01 0.68 5.49 84.83 0.47 1.14 16 3 Si 0.97 42.52 28.62 68.60 1.96 44.49 16 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 6 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.40 -22.48 9.94 67.92 0.68 -21.80 16 8 H 0.08 4.93 5.42 -2.91 -0.02 4.92 16 9 O -0.23 -11.26 8.58 -21.39 -0.18 -11.44 16 10 C 0.15 6.15 6.65 22.67 0.15 6.30 16 11 C -0.24 -9.93 9.15 22.35 0.20 -9.73 16 12 C -0.02 -0.74 9.67 22.50 0.22 -0.52 16 13 C -0.13 -3.67 5.88 -20.06 -0.12 -3.79 16 14 C 0.36 9.81 7.73 136.43 1.05 10.87 16 15 N -0.52 -16.71 10.83 -181.33 -1.96 -18.68 16 16 C -0.02 -0.48 7.20 39.58 0.28 -0.20 16 17 C 0.10 1.97 7.29 38.85 0.28 2.25 16 18 C -0.14 -1.90 10.04 22.37 0.22 -1.68 16 19 C 0.14 2.13 7.29 22.41 0.16 2.29 16 20 F -0.12 -1.78 17.26 44.97 0.78 -1.01 16 21 C -0.18 -3.14 9.97 22.33 0.22 -2.91 16 22 C 0.16 3.80 7.34 22.60 0.17 3.96 16 23 F -0.13 -3.69 17.27 44.97 0.78 -2.91 16 24 N -0.57 -10.42 6.12 -180.62 -1.11 -11.53 16 25 H 0.45 4.19 8.00 -92.71 -0.74 3.45 16 26 C -0.03 -0.73 9.68 22.50 0.22 -0.52 16 27 C -0.18 -5.71 9.97 22.35 0.22 -5.49 16 28 H 0.29 15.14 8.31 -92.71 -0.77 14.37 16 29 H 0.12 5.37 5.62 -2.91 -0.02 5.35 16 30 H 0.13 4.49 7.80 -2.91 -0.02 4.47 16 31 H 0.18 1.24 8.06 -2.91 -0.02 1.21 16 32 H 0.18 2.14 8.06 -2.91 -0.02 2.11 16 33 H 0.17 2.23 7.09 -2.91 -0.02 2.21 16 34 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -67.96 313.67 5.46 -62.50 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.46 Total: 10.98 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 4.44 Total: -19.81 kcal Atomic # 7 Polarization: -80.02 SS G_CDS: -2.77 Total: -82.79 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -0.18 Total: -11.44 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 1.55 Total: -3.92 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.96 Total: 44.49 kcal Total: -67.96 5.46 -62.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250643040.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.964 kcal (2) G-P(sol) polarization free energy of solvation -67.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds