Wall clock time and date at job start Tue Mar 31 2020 11:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 119.99722 * 2 1 4 4 N 1.46501 * 109.46820 * 125.61880 * 3 2 1 5 5 C 1.46503 * 120.00015 * 85.08974 * 4 3 2 6 6 C 1.50698 * 109.47125 * 97.44394 * 5 4 3 7 7 H 1.08003 * 120.00295 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99459 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00184 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99636 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46855 * 89.99966 * 10 8 6 12 12 H 1.48502 * 109.47092 * 209.99660 * 10 8 6 13 13 H 1.48494 * 109.47172 * 330.00126 * 10 8 6 14 14 C 1.34768 * 119.99759 * 265.07872 * 4 3 2 15 15 O 1.21700 * 120.00272 * 359.08823 * 14 4 3 16 16 C 1.46679 * 120.00113 * 179.08309 * 14 4 3 17 17 C 1.37873 * 126.23620 * 190.01374 * 16 14 4 18 18 C 1.39837 * 107.08610 * 179.97438 * 17 16 14 19 19 S 1.76193 * 126.06870 * 180.02562 * 18 17 16 20 20 O 1.42098 * 106.40479 * 203.54415 * 19 18 17 21 21 O 1.42104 * 106.40366 * 336.46785 * 19 18 17 22 22 F 1.61002 * 107.21900 * 90.00341 * 19 18 17 23 23 C 1.35456 * 107.86203 * 0.02562 * 18 17 16 24 24 N 1.35528 * 108.87311 * 359.76533 * 23 18 17 25 25 H 0.97003 * 125.67688 * 180.26564 * 24 23 18 26 26 H 1.07998 * 120.00204 * 5.01728 * 1 2 3 27 27 H 1.08003 * 120.00003 * 185.00925 * 1 2 3 28 28 H 1.07999 * 119.99995 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.47106 * 5.61308 * 3 2 1 30 30 H 1.09000 * 109.46518 * 245.61759 * 3 2 1 31 31 H 1.09006 * 109.46429 * 217.44326 * 5 4 3 32 32 H 1.09001 * 109.46858 * 337.43997 * 5 4 3 33 33 H 0.97004 * 119.99888 * 180.02562 * 9 8 6 34 34 H 1.08003 * 126.45987 * 0.02562 * 17 16 14 35 35 H 1.08004 * 125.55907 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0042 1.3259 1.1228 5 6 4.3316 0.7232 0.9775 6 6 5.3376 1.7967 0.6506 7 1 5.0199 2.8249 0.5597 8 6 6.6633 1.4658 0.4665 9 7 7.0501 0.2137 0.5766 10 14 7.9102 2.7963 0.0605 11 1 8.4786 3.3425 1.3191 12 1 9.0007 2.2176 -0.7649 13 1 7.2426 3.8864 -0.6951 14 6 2.6486 1.8995 2.2894 15 8 1.5522 2.4149 2.4047 16 6 3.5829 1.9025 3.4200 17 6 3.2928 2.2725 4.7161 18 6 4.4679 2.1227 5.4590 19 16 4.6581 2.4577 7.1783 20 8 6.0409 2.7091 7.3877 21 8 3.6387 3.3864 7.5214 22 9 4.3185 1.0972 7.9695 23 6 5.4342 1.6742 4.6223 24 7 4.9080 1.5317 3.3815 25 1 5.3861 1.2214 2.5965 26 1 -0.5400 0.9317 -0.0818 27 1 -0.5400 -0.9318 0.0817 28 1 1.8500 -0.9353 0.0004 29 1 1.3594 2.1311 0.1005 30 1 2.6125 1.4076 -0.9360 31 1 4.6125 0.2339 1.9102 32 1 4.3106 -0.0122 0.1733 33 1 7.9829 -0.0189 0.4474 34 1 2.3376 2.6131 5.0878 35 1 6.4559 1.4607 4.8997 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346795520.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:10 Heat of formation + Delta-G solvation = -87.168832 kcal Electronic energy + Delta-G solvation = -24455.620552 eV Core-core repulsion = 20497.123933 eV Total energy + Delta-G solvation = -3958.496620 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.073 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -47.97237 -41.24759 -38.77362 -37.41170 -36.09674 -35.86431 -34.06442 -32.57766 -31.00832 -29.34727 -27.97296 -25.95793 -23.63139 -22.02450 -21.82664 -19.97723 -19.80803 -19.46464 -17.74225 -17.50212 -16.98157 -16.57406 -16.26911 -15.80473 -15.54047 -14.96116 -14.63665 -14.37768 -14.23897 -14.07424 -13.64091 -13.41601 -13.10094 -12.84017 -12.72547 -12.68717 -12.49024 -12.29513 -12.19793 -11.88895 -11.66595 -11.33485 -11.30112 -11.00728 -10.94603 -10.54979 -10.20780 -9.66671 -9.38606 -9.18211 -9.03505 -8.34202 -8.00675 -6.70835 -4.86380 0.12300 1.86855 2.09641 2.39268 2.95181 3.05427 3.08931 3.19381 3.50170 3.62766 3.79403 3.85524 3.99480 4.26228 4.59975 5.06265 5.17190 5.24197 5.40588 5.43368 5.72786 5.87450 5.97517 6.00276 6.12308 6.19974 6.57964 6.70684 6.78187 6.89591 6.93048 7.15422 7.28330 7.43554 7.83431 7.91570 8.30642 8.65300 8.86827 10.31275 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.010737 B = 0.005513 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.174091 B = 5078.125494 C = 7064.115675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.164 4.164 3 C 0.144 3.856 4 N -0.592 5.592 5 C 0.217 3.783 6 C -0.567 4.567 7 H 0.073 0.927 8 C 0.066 3.934 9 N -0.880 5.880 10 Si 0.901 3.099 11 H -0.272 1.272 12 H -0.279 1.279 13 H -0.268 1.268 14 C 0.589 3.411 15 O -0.552 6.552 16 C -0.031 4.031 17 C -0.041 4.041 18 C -0.784 4.784 19 S 2.698 3.302 20 O -0.941 6.941 21 O -0.936 6.936 22 F -0.481 7.481 23 C 0.137 3.863 24 N -0.491 5.491 25 H 0.457 0.543 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.034 0.966 32 H 0.053 0.947 33 H 0.276 0.724 34 H 0.161 0.839 35 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.326 -1.613 5.082 6.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.183 4.183 3 C 0.021 3.979 4 N -0.321 5.321 5 C 0.096 3.904 6 C -0.606 4.606 7 H 0.091 0.909 8 C -0.141 4.141 9 N -0.515 5.515 10 Si 0.727 3.273 11 H -0.197 1.197 12 H -0.204 1.204 13 H -0.192 1.192 14 C 0.378 3.622 15 O -0.431 6.431 16 C -0.145 4.145 17 C -0.067 4.067 18 C -0.880 4.880 19 S 2.788 3.212 20 O -0.940 6.940 21 O -0.935 6.935 22 F -0.480 7.480 23 C -0.013 4.013 24 N -0.098 5.098 25 H 0.318 0.682 26 H 0.115 0.885 27 H 0.113 0.887 28 H 0.126 0.874 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.178 0.822 35 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -3.590 -1.426 5.510 6.729 hybrid contribution 1.092 0.122 -1.428 1.802 sum -2.498 -1.305 4.082 4.960 Atomic orbital electron populations 1.23778 0.95801 1.01661 1.00878 1.23366 0.96207 0.99209 0.99554 1.20437 0.92183 0.95396 0.89843 1.48010 1.16525 1.56317 1.11273 1.19809 0.77722 0.94474 0.98425 1.21698 0.92364 0.95215 1.51316 0.90895 1.25126 0.98755 0.96251 0.93942 1.69916 1.18478 1.16643 1.46504 0.86392 0.80308 0.81317 0.79311 1.19726 1.20390 1.19208 1.16980 0.85341 0.78323 0.81593 1.90760 1.22050 1.47382 1.82935 1.20622 0.85378 1.12372 0.96160 1.20770 0.96873 0.98582 0.90433 1.30172 1.02884 1.32213 1.22746 1.02763 0.74325 0.70607 0.73463 1.93707 1.32228 1.82414 1.85613 1.93708 1.59197 1.57398 1.83175 1.93669 1.95495 1.72403 1.86447 1.21950 0.98330 0.96397 0.84645 1.44811 1.09613 1.43320 1.12055 0.68167 0.88498 0.88745 0.87437 0.89675 0.89587 0.94845 0.92920 0.91398 0.82169 0.79634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 14.31 29.02 0.42 -2.04 16 2 C -0.16 -2.48 9.84 -36.02 -0.35 -2.84 16 3 C 0.14 2.46 5.87 -5.19 -0.03 2.43 16 4 N -0.59 -11.65 2.46 -177.98 -0.44 -12.09 16 5 C 0.22 4.53 4.74 -5.19 -0.02 4.51 16 6 C -0.57 -12.81 7.27 -34.44 -0.25 -13.06 16 7 H 0.07 1.74 7.81 -52.48 -0.41 1.33 16 8 C 0.07 1.49 5.05 -17.82 -0.09 1.40 16 9 N -0.88 -20.51 13.29 55.43 0.74 -19.78 16 10 Si 0.90 18.28 29.54 -169.99 -5.02 13.26 16 11 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 12 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 13 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 14 C 0.59 12.23 7.57 -12.86 -0.10 12.14 16 15 O -0.55 -12.21 16.40 5.19 0.09 -12.13 16 16 C -0.03 -0.61 6.62 -81.98 -0.54 -1.15 16 17 C -0.04 -0.72 10.46 -39.12 -0.41 -1.13 16 18 C -0.78 -11.99 6.23 -39.98 -0.25 -12.24 16 19 S 2.70 35.14 7.00 -107.50 -0.75 34.39 16 20 O -0.94 -13.87 17.87 -57.17 -1.02 -14.89 16 21 O -0.94 -14.42 17.89 -57.17 -1.02 -15.45 16 22 F -0.48 -5.78 17.91 2.25 0.04 -5.74 16 23 C 0.14 2.17 11.64 -16.91 -0.20 1.97 16 24 N -0.49 -9.20 4.78 -9.39 -0.04 -9.25 16 25 H 0.46 9.16 3.28 -40.82 -0.13 9.03 16 26 H 0.10 1.26 7.86 -52.49 -0.41 0.84 16 27 H 0.09 1.09 8.06 -52.48 -0.42 0.67 16 28 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.08 1.46 6.93 -51.93 -0.36 1.10 16 30 H 0.09 1.40 8.11 -51.93 -0.42 0.98 16 31 H 0.03 0.72 5.19 -51.93 -0.27 0.45 16 32 H 0.05 1.14 8.02 -51.93 -0.42 0.72 16 33 H 0.28 6.15 8.31 -40.82 -0.34 5.81 16 34 H 0.16 2.56 8.06 -52.48 -0.42 2.14 16 35 H 0.19 2.29 8.06 -52.48 -0.42 1.86 16 LS Contribution 325.81 15.07 4.91 4.91 Total: -1.00 -28.52 325.81 -7.61 -36.13 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -3.25 Total: 10.63 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -1.83 Total: -10.01 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.25 Total: -41.11 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -1.96 Total: -42.46 kcal Atomic # 9 Polarization: -5.78 SS G_CDS: 0.04 Total: -5.74 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.02 Total: 13.26 kcal Atomic # 16 Polarization: 35.14 SS G_CDS: -0.75 Total: 34.39 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -28.52 -7.61 -36.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346795520.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.043 kcal (2) G-P(sol) polarization free energy of solvation -28.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds