Wall clock time and date at job start Tue Mar 31 2020 11:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 119.99722 * 2 1 4 4 N 1.46501 * 109.46820 * 125.61880 * 3 2 1 5 5 C 1.46503 * 120.00015 * 85.08974 * 4 3 2 6 6 C 1.50698 * 109.47125 * 97.44394 * 5 4 3 7 7 H 1.08003 * 120.00295 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99459 * 180.02562 * 6 5 4 9 9 N 1.31509 * 120.00184 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 119.99636 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.46855 * 89.99966 * 10 8 6 12 12 H 1.48502 * 109.47092 * 209.99660 * 10 8 6 13 13 H 1.48494 * 109.47172 * 330.00126 * 10 8 6 14 14 C 1.34768 * 119.99759 * 265.07872 * 4 3 2 15 15 O 1.21700 * 120.00272 * 359.08823 * 14 4 3 16 16 C 1.46679 * 120.00113 * 179.08309 * 14 4 3 17 17 C 1.37873 * 126.23620 * 190.01374 * 16 14 4 18 18 C 1.39837 * 107.08610 * 179.97438 * 17 16 14 19 19 S 1.76193 * 126.06870 * 180.02562 * 18 17 16 20 20 O 1.42098 * 106.40479 * 203.54415 * 19 18 17 21 21 O 1.42104 * 106.40366 * 336.46785 * 19 18 17 22 22 F 1.61002 * 107.21900 * 90.00341 * 19 18 17 23 23 C 1.35456 * 107.86203 * 0.02562 * 18 17 16 24 24 N 1.35528 * 108.87311 * 359.76533 * 23 18 17 25 25 H 0.97003 * 125.67688 * 180.26564 * 24 23 18 26 26 H 1.07998 * 120.00204 * 5.01728 * 1 2 3 27 27 H 1.08003 * 120.00003 * 185.00925 * 1 2 3 28 28 H 1.07999 * 119.99995 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.47106 * 5.61308 * 3 2 1 30 30 H 1.09000 * 109.46518 * 245.61759 * 3 2 1 31 31 H 1.09006 * 109.46429 * 217.44326 * 5 4 3 32 32 H 1.09001 * 109.46858 * 337.43997 * 5 4 3 33 33 H 0.97004 * 119.99888 * 180.02562 * 9 8 6 34 34 H 1.08003 * 126.45987 * 0.02562 * 17 16 14 35 35 H 1.08004 * 125.55907 * 180.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0042 1.3259 1.1228 5 6 4.3316 0.7232 0.9775 6 6 5.3376 1.7967 0.6506 7 1 5.0199 2.8249 0.5597 8 6 6.6633 1.4658 0.4665 9 7 7.0501 0.2137 0.5766 10 14 7.9102 2.7963 0.0605 11 1 8.4786 3.3425 1.3191 12 1 9.0007 2.2176 -0.7649 13 1 7.2426 3.8864 -0.6951 14 6 2.6486 1.8995 2.2894 15 8 1.5522 2.4149 2.4047 16 6 3.5829 1.9025 3.4200 17 6 3.2928 2.2725 4.7161 18 6 4.4679 2.1227 5.4590 19 16 4.6581 2.4577 7.1783 20 8 6.0409 2.7091 7.3877 21 8 3.6387 3.3864 7.5214 22 9 4.3185 1.0972 7.9695 23 6 5.4342 1.6742 4.6223 24 7 4.9080 1.5317 3.3815 25 1 5.3861 1.2214 2.5965 26 1 -0.5400 0.9317 -0.0818 27 1 -0.5400 -0.9318 0.0817 28 1 1.8500 -0.9353 0.0004 29 1 1.3594 2.1311 0.1005 30 1 2.6125 1.4076 -0.9360 31 1 4.6125 0.2339 1.9102 32 1 4.3106 -0.0122 0.1733 33 1 7.9829 -0.0189 0.4474 34 1 2.3376 2.6131 5.0878 35 1 6.4559 1.4607 4.8997 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346795520.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:10 Heat of formation + Delta-G solvation = -105.766550 kcal Electronic energy + Delta-G solvation = -24456.427010 eV Core-core repulsion = 20497.123933 eV Total energy + Delta-G solvation = -3959.303077 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 316.073 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.02892 -42.63950 -40.28847 -38.58631 -37.42931 -37.27514 -35.53510 -34.10964 -32.36231 -30.71583 -29.62056 -27.33376 -25.32627 -23.27114 -23.22809 -21.26273 -21.00644 -20.72545 -19.21321 -18.72233 -18.57167 -17.86214 -17.57533 -17.11036 -16.99667 -16.54273 -16.17456 -15.63398 -15.38772 -15.17172 -14.99554 -14.80279 -14.59199 -14.39711 -14.17190 -13.83897 -13.74615 -13.51039 -13.39700 -13.36806 -13.25613 -12.89069 -12.71517 -12.45573 -12.27433 -12.19112 -11.87823 -11.24973 -10.88144 -10.63177 -10.35648 -9.85695 -9.46807 -8.44890 -6.65452 -1.00450 0.42907 0.83332 1.20980 1.33522 1.40579 1.47241 2.03147 2.10085 2.24841 2.26764 2.49632 2.56848 2.84491 3.11398 3.61172 3.97294 4.01904 4.12828 4.18266 4.39347 4.51526 4.53600 4.67414 4.73920 4.89599 4.99792 5.34338 5.43392 5.52178 5.63326 5.65770 5.71311 5.81800 6.28415 6.41271 6.55779 7.04107 7.13749 8.56780 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.010737 B = 0.005513 C = 0.003963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.174091 B = 5078.125494 C = 7064.115675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.186 4.186 3 C 0.141 3.859 4 N -0.593 5.593 5 C 0.229 3.771 6 C -0.571 4.571 7 H 0.055 0.945 8 C 0.040 3.960 9 N -0.897 5.897 10 Si 0.947 3.053 11 H -0.266 1.266 12 H -0.275 1.275 13 H -0.277 1.277 14 C 0.581 3.419 15 O -0.575 6.575 16 C -0.067 4.067 17 C -0.039 4.039 18 C -0.782 4.782 19 S 2.745 3.255 20 O -0.950 6.950 21 O -0.955 6.955 22 F -0.469 7.469 23 C 0.142 3.858 24 N -0.507 5.507 25 H 0.452 0.548 26 H 0.101 0.899 27 H 0.119 0.881 28 H 0.108 0.892 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.033 0.967 32 H 0.042 0.958 33 H 0.280 0.720 34 H 0.170 0.830 35 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.923 -1.809 6.069 6.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.205 4.205 3 C 0.019 3.981 4 N -0.321 5.321 5 C 0.107 3.893 6 C -0.609 4.609 7 H 0.074 0.926 8 C -0.165 4.165 9 N -0.534 5.534 10 Si 0.772 3.228 11 H -0.191 1.191 12 H -0.200 1.200 13 H -0.202 1.202 14 C 0.371 3.629 15 O -0.457 6.457 16 C -0.180 4.180 17 C -0.064 4.064 18 C -0.876 4.876 19 S 2.833 3.167 20 O -0.948 6.948 21 O -0.953 6.953 22 F -0.469 7.469 23 C -0.008 4.008 24 N -0.114 5.114 25 H 0.310 0.690 26 H 0.119 0.881 27 H 0.137 0.863 28 H 0.126 0.874 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.188 0.812 35 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -3.196 -1.632 6.476 7.404 hybrid contribution 0.928 0.167 -1.670 1.918 sum -2.269 -1.465 4.805 5.512 Atomic orbital electron populations 1.24020 0.95162 1.02989 0.97805 1.23223 0.96822 0.98100 1.02373 1.20552 0.91918 0.96577 0.89072 1.48070 1.16463 1.55844 1.11768 1.19585 0.78075 0.93799 0.97823 1.21656 0.93033 0.94636 1.51601 0.92622 1.25562 0.99674 0.97485 0.93754 1.69956 1.18931 1.17525 1.46946 0.85691 0.78707 0.79300 0.79121 1.19138 1.19990 1.20178 1.17252 0.85433 0.78053 0.82139 1.90720 1.22987 1.48573 1.83442 1.20657 0.85914 1.14858 0.96591 1.21033 0.97971 0.97414 0.90000 1.30465 1.01855 1.31356 1.23955 1.01514 0.73316 0.69883 0.71985 1.93690 1.33001 1.82731 1.85416 1.93683 1.59997 1.58506 1.83124 1.93659 1.95416 1.71794 1.85983 1.22658 0.99842 0.94741 0.83532 1.44747 1.09452 1.44336 1.12818 0.68984 0.88110 0.86324 0.87361 0.90134 0.89532 0.94936 0.94020 0.91072 0.81240 0.76248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.11 14.31 67.78 0.97 -3.14 16 2 C -0.19 -5.59 9.84 25.65 0.25 -5.33 16 3 C 0.14 4.90 5.87 85.63 0.50 5.40 16 4 N -0.59 -23.86 2.46 -835.21 -2.06 -25.92 16 5 C 0.23 9.75 4.74 85.63 0.41 10.15 16 6 C -0.57 -26.05 7.27 25.60 0.19 -25.86 16 7 H 0.06 2.70 7.81 -2.91 -0.02 2.68 16 8 C 0.04 1.81 5.05 84.66 0.43 2.23 16 9 N -0.90 -41.45 13.29 21.45 0.28 -41.16 16 10 Si 0.95 36.95 29.54 68.60 2.03 38.98 16 11 H -0.27 -10.11 7.11 99.48 0.71 -9.41 16 12 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 13 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 14 C 0.58 24.61 7.57 86.45 0.65 25.26 16 15 O -0.58 -25.91 16.40 -4.35 -0.07 -25.98 16 16 C -0.07 -2.63 6.62 40.35 0.27 -2.36 16 17 C -0.04 -1.32 10.46 22.57 0.24 -1.08 16 18 C -0.78 -22.55 6.23 22.01 0.14 -22.41 16 19 S 2.74 64.92 7.00 -56.49 -0.40 64.52 16 20 O -0.95 -25.33 17.87 -128.00 -2.29 -27.62 16 21 O -0.95 -27.42 17.89 -128.00 -2.29 -29.71 16 22 F -0.47 -9.99 17.91 44.97 0.81 -9.19 16 23 C 0.14 4.23 11.64 83.48 0.97 5.20 16 24 N -0.51 -18.82 4.78 -183.62 -0.88 -19.70 16 25 H 0.45 18.07 3.28 -92.71 -0.30 17.76 16 26 H 0.10 2.48 7.86 -2.91 -0.02 2.46 16 27 H 0.12 2.44 8.06 -2.91 -0.02 2.42 16 28 H 0.11 3.21 8.06 -2.91 -0.02 3.19 16 29 H 0.08 2.84 6.93 -2.39 -0.02 2.82 16 30 H 0.09 2.91 8.11 -2.39 -0.02 2.89 16 31 H 0.03 1.43 5.19 -2.38 -0.01 1.41 16 32 H 0.04 1.85 8.02 -2.39 -0.02 1.83 16 33 H 0.28 12.24 8.31 -92.71 -0.77 11.47 16 34 H 0.17 5.31 8.06 -2.91 -0.02 5.28 16 35 H 0.22 4.78 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -59.38 325.81 0.99 -58.40 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.84 Total: 29.32 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: 5.01 Total: -11.94 kcal Atomic # 7 Polarization: -84.13 SS G_CDS: -2.65 Total: -86.78 kcal Atomic # 8 Polarization: -78.66 SS G_CDS: -4.65 Total: -83.31 kcal Atomic # 9 Polarization: -9.99 SS G_CDS: 0.81 Total: -9.19 kcal Atomic # 14 Polarization: 36.95 SS G_CDS: 2.03 Total: 38.98 kcal Atomic # 16 Polarization: 64.92 SS G_CDS: -0.40 Total: 64.52 kcal Total: -59.38 0.99 -58.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346795520.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.372 kcal (2) G-P(sol) polarization free energy of solvation -59.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds