Wall clock time and date at job start Tue Mar 31 2020 11:46:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86808 * 119.99958 * 2 1
4 4 H 1.48497 * 109.46507 * 269.99782 * 3 2 1
5 5 H 1.48496 * 109.47025 * 29.99814 * 3 2 1
6 6 H 1.48503 * 109.46839 * 149.99762 * 3 2 1
7 7 C 1.37878 * 120.00292 * 179.97438 * 2 1 3
8 8 H 1.07995 * 120.00479 * 185.02578 * 7 2 1
9 9 C 1.50706 * 119.99803 * 5.03367 * 7 2 1
10 10 H 1.09002 * 109.46908 * 335.00984 * 9 7 2
11 11 C 1.50692 * 109.47178 * 215.01076 * 9 7 2
12 12 O 1.21275 * 120.00189 * 240.00237 * 11 9 7
13 13 N 1.34779 * 120.00048 * 59.99654 * 11 9 7
14 14 C 1.39452 * 120.00035 * 185.18350 * 13 11 9
15 15 C 1.39030 * 119.68091 * 174.81522 * 14 13 11
16 16 C 1.38355 * 119.11241 * 179.97438 * 15 14 13
17 17 C 1.38931 * 118.48609 * 0.02562 * 16 15 14
18 18 Cl 1.73608 * 120.35447 * 179.97438 * 17 16 15
19 19 C 1.38173 * 119.28676 * 359.97438 * 17 16 15
20 20 N 1.31940 * 120.82747 * 359.74164 * 19 17 16
21 21 C 1.50704 * 109.47067 * 95.01004 * 9 7 2
22 22 C 1.38231 * 119.99966 * 54.40757 * 21 9 7
23 23 C 1.38236 * 119.99891 * 179.78655 * 22 21 9
24 24 C 1.38229 * 120.00126 * 0.44263 * 23 22 21
25 25 C 1.38243 * 119.99941 * 359.81060 * 24 23 22
26 26 C 1.38231 * 119.99650 * 359.97438 * 25 24 23
27 27 H 0.97000 * 119.99889 * 0.02562 * 1 2 3
28 28 H 0.96999 * 120.00246 * 5.19411 * 13 11 9
29 29 H 1.07996 * 120.44244 * 359.96770 * 15 14 13
30 30 H 1.08005 * 120.75659 * 180.02562 * 16 15 14
31 31 H 1.07997 * 119.58690 * 179.97438 * 19 17 16
32 32 H 1.08004 * 120.00177 * 359.97438 * 22 21 9
33 33 H 1.08005 * 119.99959 * 180.27205 * 23 22 21
34 34 H 1.07998 * 120.00490 * 179.83472 * 24 23 22
35 35 H 1.07993 * 120.00023 * 179.97438 * 25 24 23
36 36 H 1.08000 * 119.99893 * 180.02562 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4966 2.0463 -1.4001
5 1 1.4466 2.6527 0.7000
6 1 3.5467 1.4402 0.7001
7 6 2.0046 -1.1940 0.0005
8 1 3.0814 -1.1958 0.0825
9 6 1.2554 -2.4967 -0.1134
10 1 0.2367 -2.3630 0.2506
11 6 1.9496 -3.5492 0.7119
12 8 2.3742 -4.5536 0.1811
13 7 2.0987 -3.3744 2.0400
14 6 2.8344 -4.2945 2.7862
15 6 3.0755 -4.0522 4.1338
16 6 3.8064 -4.9732 4.8631
17 6 4.2737 -6.1102 4.2159
18 17 5.1963 -7.2972 5.0841
19 6 3.9963 -6.2862 2.8737
20 7 3.2917 -5.3925 2.2061
21 6 1.2205 -2.9316 -1.5559
22 6 2.3979 -3.0528 -2.2699
23 6 2.3662 -3.4560 -3.5918
24 6 1.1565 -3.7291 -4.2023
25 6 -0.0214 -3.6029 -3.4897
26 6 0.0107 -3.2040 -2.1666
27 1 -0.4850 0.8401 -0.0004
28 1 1.6941 -2.6086 2.4768
29 1 2.6975 -3.1570 4.6050
30 1 4.0090 -4.8118 5.9116
31 1 4.3575 -7.1681 2.3657
32 1 3.3428 -2.8355 -1.7942
33 1 3.2865 -3.5550 -4.1484
34 1 1.1315 -4.0416 -5.2358
35 1 -0.9665 -3.8158 -3.9668
36 1 -0.9095 -3.1057 -1.6098
RHF calculation, no. of doubly occupied orbitals= 54
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001351116128.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:46:44
Heat of formation + Delta-G solvation = 25.569049 kcal
Electronic energy + Delta-G solvation = -22973.009072 eV
Core-core repulsion = 19448.126652 eV
Total energy + Delta-G solvation = -3524.882420 eV
No. of doubly occupied orbitals = 54
Molecular weight
(most abundant/longest-lived isotopes) = 316.072 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-40.51314 -38.98384 -37.74634 -36.53861 -34.24062 -33.74967 -32.35758 -31.19913
-29.99222 -29.69378 -27.38572 -24.35797 -23.83132 -22.93326 -21.66023 -20.93860
-19.49554 -17.86750 -16.97736 -16.56401 -16.44803 -15.86954 -15.44285 -14.76747
-14.56088 -14.51887 -14.13262 -13.93884 -13.39345 -13.24429 -13.00819 -12.55924
-12.53946 -12.35757 -12.09790 -11.72942 -11.58781 -11.26843 -11.13526 -11.10192
-10.48180 -10.34685 -10.13497 -10.11208 -9.83073 -9.56136 -9.47412 -8.84998
-8.52055 -7.99894 -7.92308 -7.69455 -6.38534 -4.45180 1.06426 1.27083
2.09630 2.31331 2.33929 3.14223 3.21949 3.22676 3.39313 3.46741
4.02473 4.21857 4.53961 4.75065 4.76752 4.97300 4.98897 5.06331
5.62019 5.68164 5.70846 5.76169 5.86087 5.91169 6.08847 6.15376
6.32890 6.43474 6.51791 6.77925 6.88910 7.00837 7.09012 7.31893
7.37875 7.52588 7.62197 7.65933 7.86478 7.99494 8.29659 8.59714
9.01704 9.21611 10.69760
Molecular weight = 316.07amu
Principal moments of inertia in cm(-1)
A = 0.013047 B = 0.004031 C = 0.003305
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2145.503442 B = 6944.687341 C = 8470.673956
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.878 5.878
2 C 0.077 3.923
3 Si 0.899 3.101
4 H -0.276 1.276
5 H -0.284 1.284
6 H -0.271 1.271
7 C -0.520 4.520
8 H 0.063 0.937
9 C 0.052 3.948
10 H 0.096 0.904
11 C 0.516 3.484
12 O -0.492 6.492
13 N -0.651 5.651
14 C 0.383 3.617
15 C -0.207 4.207
16 C -0.037 4.037
17 C -0.141 4.141
18 Cl -0.073 7.073
19 C 0.152 3.848
20 N -0.464 5.464
21 C -0.015 4.015
22 C -0.084 4.084
23 C -0.133 4.133
24 C -0.146 4.146
25 C -0.132 4.132
26 C -0.118 4.118
27 H 0.269 0.731
28 H 0.424 0.576
29 H 0.144 0.856
30 H 0.143 0.857
31 H 0.162 0.838
32 H 0.111 0.889
33 H 0.107 0.893
34 H 0.106 0.894
35 H 0.107 0.893
36 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.799 -6.902 6.961 10.513
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.513 5.513
2 C -0.128 4.128
3 Si 0.726 3.274
4 H -0.202 1.202
5 H -0.209 1.209
6 H -0.196 1.196
7 C -0.557 4.557
8 H 0.081 0.919
9 C 0.030 3.970
10 H 0.114 0.886
11 C 0.305 3.695
12 O -0.362 6.362
13 N -0.296 5.296
14 C 0.150 3.850
15 C -0.231 4.231
16 C -0.064 4.064
17 C -0.171 4.171
18 Cl -0.045 7.045
19 C -0.008 4.008
20 N -0.179 5.179
21 C -0.017 4.017
22 C -0.102 4.102
23 C -0.151 4.151
24 C -0.164 4.164
25 C -0.150 4.150
26 C -0.136 4.136
27 H 0.079 0.921
28 H 0.262 0.738
29 H 0.162 0.838
30 H 0.160 0.840
31 H 0.179 0.821
32 H 0.129 0.871
33 H 0.125 0.875
34 H 0.124 0.876
35 H 0.125 0.875
36 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges 3.752 -7.630 5.629 10.197
hybrid contribution 0.501 1.497 1.134 1.944
sum 4.253 -6.132 6.763 10.071
Atomic orbital electron populations
1.69864 1.06025 1.27699 1.47743 1.24953 0.94910 0.99516 0.93450
0.86473 0.79831 0.82479 0.78668 1.20204 1.20928 1.19587 1.20682
0.93326 0.88415 1.53270 0.91862 1.18162 0.99768 0.91465 0.87558
0.88644 1.22140 0.78849 0.87722 0.80789 1.90706 1.46243 1.28925
1.70360 1.44031 1.50654 1.25440 1.09435 1.18895 0.89654 0.88310
0.88156 1.21523 1.05472 1.02644 0.93493 1.21185 0.93840 0.91090
1.00266 1.21878 1.05484 0.95040 0.94743 1.98342 1.72676 1.56872
1.76572 1.22705 0.92079 0.97220 0.88835 1.67993 1.11606 1.01593
1.36714 1.19979 0.92234 0.92515 0.96927 1.20827 0.98281 0.97727
0.93361 1.20962 0.97072 1.01620 0.95480 1.20822 0.93015 1.03610
0.98994 1.20910 0.97305 1.01847 0.94908 1.20992 0.97727 1.00056
0.94858 0.92129 0.73757 0.83783 0.83967 0.82100 0.87101 0.87502
0.87620 0.87457 0.86899
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -22.11 12.77 55.43 0.71 -21.40 16
2 C 0.08 1.87 5.45 -17.82 -0.10 1.77 16
3 Si 0.90 19.29 29.54 -169.99 -5.02 14.26 16
4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16
5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16
6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16
7 C -0.52 -12.44 7.55 -34.44 -0.26 -12.70 16
8 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16
9 C 0.05 1.18 2.45 -94.07 -0.23 0.95 16
10 H 0.10 2.28 6.99 -51.93 -0.36 1.91 16
11 C 0.52 11.17 7.00 -10.99 -0.08 11.09 16
12 O -0.49 -11.77 13.66 5.56 0.08 -11.69 16
13 N -0.65 -11.81 5.27 -11.42 -0.06 -11.87 16
14 C 0.38 6.46 7.42 -154.67 -1.15 5.32 16
15 C -0.21 -2.67 9.94 -39.24 -0.39 -3.06 16
16 C -0.04 -0.43 9.97 -39.28 -0.39 -0.82 16
17 C -0.14 -1.77 6.34 -39.35 -0.25 -2.02 16
18 Cl -0.07 -0.80 28.99 -51.86 -1.50 -2.30 16
19 C 0.15 2.23 10.97 -17.53 -0.19 2.04 16
20 N -0.46 -8.49 7.89 -12.33 -0.10 -8.59 16
21 C -0.02 -0.35 4.31 -104.62 -0.45 -0.80 16
22 C -0.08 -1.84 8.28 -39.58 -0.33 -2.17 16
23 C -0.13 -2.58 10.05 -39.59 -0.40 -2.98 16
24 C -0.15 -2.67 10.05 -39.58 -0.40 -3.06 16
25 C -0.13 -2.48 10.05 -39.58 -0.40 -2.88 16
26 C -0.12 -2.51 9.67 -39.59 -0.38 -2.89 16
27 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16
28 H 0.42 6.79 8.66 -40.82 -0.35 6.44 16
29 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16
30 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16
31 H 0.16 2.04 8.06 -52.49 -0.42 1.62 16
32 H 0.11 2.48 7.91 -52.48 -0.42 2.07 16
33 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16
34 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16
35 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16
36 H 0.11 2.30 7.95 -52.49 -0.42 1.88 16
LS Contribution 334.92 15.07 5.05 5.05
Total: -1.00 -28.69 334.92 -9.87 -38.56
By element:
Atomic # 1 Polarization: 13.85 SS G_CDS: -3.63 Total: 10.22 kcal
Atomic # 6 Polarization: -6.85 SS G_CDS: -5.39 Total: -12.24 kcal
Atomic # 7 Polarization: -42.41 SS G_CDS: 0.55 Total: -41.86 kcal
Atomic # 8 Polarization: -11.77 SS G_CDS: 0.08 Total: -11.69 kcal
Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.26 kcal
Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.30 kcal
Total LS contribution 5.05 Total: 5.05 kcal
Total: -28.69 -9.87 -38.56 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001351116128.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 64.128 kcal
(2) G-P(sol) polarization free energy of solvation -28.686 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.442 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.559 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.569 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds