Wall clock time and date at job start Tue Mar 31 2020 11:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99958 * 2 1 4 4 H 1.48497 * 109.46507 * 269.99782 * 3 2 1 5 5 H 1.48496 * 109.47025 * 29.99814 * 3 2 1 6 6 H 1.48503 * 109.46839 * 149.99762 * 3 2 1 7 7 C 1.37878 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00479 * 185.02578 * 7 2 1 9 9 C 1.50706 * 119.99803 * 5.03367 * 7 2 1 10 10 H 1.09002 * 109.46908 * 335.00984 * 9 7 2 11 11 C 1.50692 * 109.47178 * 215.01076 * 9 7 2 12 12 O 1.21275 * 120.00189 * 240.00237 * 11 9 7 13 13 N 1.34779 * 120.00048 * 59.99654 * 11 9 7 14 14 C 1.39452 * 120.00035 * 185.18350 * 13 11 9 15 15 C 1.39030 * 119.68091 * 174.81522 * 14 13 11 16 16 C 1.38355 * 119.11241 * 179.97438 * 15 14 13 17 17 C 1.38931 * 118.48609 * 0.02562 * 16 15 14 18 18 Cl 1.73608 * 120.35447 * 179.97438 * 17 16 15 19 19 C 1.38173 * 119.28676 * 359.97438 * 17 16 15 20 20 N 1.31940 * 120.82747 * 359.74164 * 19 17 16 21 21 C 1.50704 * 109.47067 * 95.01004 * 9 7 2 22 22 C 1.38231 * 119.99966 * 54.40757 * 21 9 7 23 23 C 1.38236 * 119.99891 * 179.78655 * 22 21 9 24 24 C 1.38229 * 120.00126 * 0.44263 * 23 22 21 25 25 C 1.38243 * 119.99941 * 359.81060 * 24 23 22 26 26 C 1.38231 * 119.99650 * 359.97438 * 25 24 23 27 27 H 0.97000 * 119.99889 * 0.02562 * 1 2 3 28 28 H 0.96999 * 120.00246 * 5.19411 * 13 11 9 29 29 H 1.07996 * 120.44244 * 359.96770 * 15 14 13 30 30 H 1.08005 * 120.75659 * 180.02562 * 16 15 14 31 31 H 1.07997 * 119.58690 * 179.97438 * 19 17 16 32 32 H 1.08004 * 120.00177 * 359.97438 * 22 21 9 33 33 H 1.08005 * 119.99959 * 180.27205 * 23 22 21 34 34 H 1.07998 * 120.00490 * 179.83472 * 24 23 22 35 35 H 1.07993 * 120.00023 * 179.97438 * 25 24 23 36 36 H 1.08000 * 119.99893 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0814 -1.1958 0.0825 9 6 1.2554 -2.4967 -0.1134 10 1 0.2367 -2.3630 0.2506 11 6 1.9496 -3.5492 0.7119 12 8 2.3742 -4.5536 0.1811 13 7 2.0987 -3.3744 2.0400 14 6 2.8344 -4.2945 2.7862 15 6 3.0755 -4.0522 4.1338 16 6 3.8064 -4.9732 4.8631 17 6 4.2737 -6.1102 4.2159 18 17 5.1963 -7.2972 5.0841 19 6 3.9963 -6.2862 2.8737 20 7 3.2917 -5.3925 2.2061 21 6 1.2205 -2.9316 -1.5559 22 6 2.3979 -3.0528 -2.2699 23 6 2.3662 -3.4560 -3.5918 24 6 1.1565 -3.7291 -4.2023 25 6 -0.0214 -3.6029 -3.4897 26 6 0.0107 -3.2040 -2.1666 27 1 -0.4850 0.8401 -0.0004 28 1 1.6941 -2.6086 2.4768 29 1 2.6975 -3.1570 4.6050 30 1 4.0090 -4.8118 5.9116 31 1 4.3575 -7.1681 2.3657 32 1 3.3428 -2.8355 -1.7942 33 1 3.2865 -3.5550 -4.1484 34 1 1.1315 -4.0416 -5.2358 35 1 -0.9665 -3.8158 -3.9668 36 1 -0.9095 -3.1057 -1.6098 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351116128.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:44 Heat of formation + Delta-G solvation = 25.569049 kcal Electronic energy + Delta-G solvation = -22973.009072 eV Core-core repulsion = 19448.126652 eV Total energy + Delta-G solvation = -3524.882420 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.51314 -38.98384 -37.74634 -36.53861 -34.24062 -33.74967 -32.35758 -31.19913 -29.99222 -29.69378 -27.38572 -24.35797 -23.83132 -22.93326 -21.66023 -20.93860 -19.49554 -17.86750 -16.97736 -16.56401 -16.44803 -15.86954 -15.44285 -14.76747 -14.56088 -14.51887 -14.13262 -13.93884 -13.39345 -13.24429 -13.00819 -12.55924 -12.53946 -12.35757 -12.09790 -11.72942 -11.58781 -11.26843 -11.13526 -11.10192 -10.48180 -10.34685 -10.13497 -10.11208 -9.83073 -9.56136 -9.47412 -8.84998 -8.52055 -7.99894 -7.92308 -7.69455 -6.38534 -4.45180 1.06426 1.27083 2.09630 2.31331 2.33929 3.14223 3.21949 3.22676 3.39313 3.46741 4.02473 4.21857 4.53961 4.75065 4.76752 4.97300 4.98897 5.06331 5.62019 5.68164 5.70846 5.76169 5.86087 5.91169 6.08847 6.15376 6.32890 6.43474 6.51791 6.77925 6.88910 7.00837 7.09012 7.31893 7.37875 7.52588 7.62197 7.65933 7.86478 7.99494 8.29659 8.59714 9.01704 9.21611 10.69760 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.013047 B = 0.004031 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.503442 B = 6944.687341 C = 8470.673956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.077 3.923 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.520 4.520 8 H 0.063 0.937 9 C 0.052 3.948 10 H 0.096 0.904 11 C 0.516 3.484 12 O -0.492 6.492 13 N -0.651 5.651 14 C 0.383 3.617 15 C -0.207 4.207 16 C -0.037 4.037 17 C -0.141 4.141 18 Cl -0.073 7.073 19 C 0.152 3.848 20 N -0.464 5.464 21 C -0.015 4.015 22 C -0.084 4.084 23 C -0.133 4.133 24 C -0.146 4.146 25 C -0.132 4.132 26 C -0.118 4.118 27 H 0.269 0.731 28 H 0.424 0.576 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.162 0.838 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.799 -6.902 6.961 10.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.128 4.128 3 Si 0.726 3.274 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.557 4.557 8 H 0.081 0.919 9 C 0.030 3.970 10 H 0.114 0.886 11 C 0.305 3.695 12 O -0.362 6.362 13 N -0.296 5.296 14 C 0.150 3.850 15 C -0.231 4.231 16 C -0.064 4.064 17 C -0.171 4.171 18 Cl -0.045 7.045 19 C -0.008 4.008 20 N -0.179 5.179 21 C -0.017 4.017 22 C -0.102 4.102 23 C -0.151 4.151 24 C -0.164 4.164 25 C -0.150 4.150 26 C -0.136 4.136 27 H 0.079 0.921 28 H 0.262 0.738 29 H 0.162 0.838 30 H 0.160 0.840 31 H 0.179 0.821 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.752 -7.630 5.629 10.197 hybrid contribution 0.501 1.497 1.134 1.944 sum 4.253 -6.132 6.763 10.071 Atomic orbital electron populations 1.69864 1.06025 1.27699 1.47743 1.24953 0.94910 0.99516 0.93450 0.86473 0.79831 0.82479 0.78668 1.20204 1.20928 1.19587 1.20682 0.93326 0.88415 1.53270 0.91862 1.18162 0.99768 0.91465 0.87558 0.88644 1.22140 0.78849 0.87722 0.80789 1.90706 1.46243 1.28925 1.70360 1.44031 1.50654 1.25440 1.09435 1.18895 0.89654 0.88310 0.88156 1.21523 1.05472 1.02644 0.93493 1.21185 0.93840 0.91090 1.00266 1.21878 1.05484 0.95040 0.94743 1.98342 1.72676 1.56872 1.76572 1.22705 0.92079 0.97220 0.88835 1.67993 1.11606 1.01593 1.36714 1.19979 0.92234 0.92515 0.96927 1.20827 0.98281 0.97727 0.93361 1.20962 0.97072 1.01620 0.95480 1.20822 0.93015 1.03610 0.98994 1.20910 0.97305 1.01847 0.94908 1.20992 0.97727 1.00056 0.94858 0.92129 0.73757 0.83783 0.83967 0.82100 0.87101 0.87502 0.87620 0.87457 0.86899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.11 12.77 55.43 0.71 -21.40 16 2 C 0.08 1.87 5.45 -17.82 -0.10 1.77 16 3 Si 0.90 19.29 29.54 -169.99 -5.02 14.26 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.52 -12.44 7.55 -34.44 -0.26 -12.70 16 8 H 0.06 1.55 7.82 -52.49 -0.41 1.14 16 9 C 0.05 1.18 2.45 -94.07 -0.23 0.95 16 10 H 0.10 2.28 6.99 -51.93 -0.36 1.91 16 11 C 0.52 11.17 7.00 -10.99 -0.08 11.09 16 12 O -0.49 -11.77 13.66 5.56 0.08 -11.69 16 13 N -0.65 -11.81 5.27 -11.42 -0.06 -11.87 16 14 C 0.38 6.46 7.42 -154.67 -1.15 5.32 16 15 C -0.21 -2.67 9.94 -39.24 -0.39 -3.06 16 16 C -0.04 -0.43 9.97 -39.28 -0.39 -0.82 16 17 C -0.14 -1.77 6.34 -39.35 -0.25 -2.02 16 18 Cl -0.07 -0.80 28.99 -51.86 -1.50 -2.30 16 19 C 0.15 2.23 10.97 -17.53 -0.19 2.04 16 20 N -0.46 -8.49 7.89 -12.33 -0.10 -8.59 16 21 C -0.02 -0.35 4.31 -104.62 -0.45 -0.80 16 22 C -0.08 -1.84 8.28 -39.58 -0.33 -2.17 16 23 C -0.13 -2.58 10.05 -39.59 -0.40 -2.98 16 24 C -0.15 -2.67 10.05 -39.58 -0.40 -3.06 16 25 C -0.13 -2.48 10.05 -39.58 -0.40 -2.88 16 26 C -0.12 -2.51 9.67 -39.59 -0.38 -2.89 16 27 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 28 H 0.42 6.79 8.66 -40.82 -0.35 6.44 16 29 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 31 H 0.16 2.04 8.06 -52.49 -0.42 1.62 16 32 H 0.11 2.48 7.91 -52.48 -0.42 2.07 16 33 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 34 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 35 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.11 2.30 7.95 -52.49 -0.42 1.88 16 LS Contribution 334.92 15.07 5.05 5.05 Total: -1.00 -28.69 334.92 -9.87 -38.56 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -3.63 Total: 10.22 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -5.39 Total: -12.24 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 0.55 Total: -41.86 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.08 Total: -11.69 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.26 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.69 -9.87 -38.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351116128.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.128 kcal (2) G-P(sol) polarization free energy of solvation -28.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds