Wall clock time and date at job start Tue Mar 31 2020 11:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99958 * 2 1 4 4 H 1.48497 * 109.46507 * 269.99782 * 3 2 1 5 5 H 1.48496 * 109.47025 * 29.99814 * 3 2 1 6 6 H 1.48503 * 109.46839 * 149.99762 * 3 2 1 7 7 C 1.37878 * 120.00292 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00479 * 185.02578 * 7 2 1 9 9 C 1.50706 * 119.99803 * 5.03367 * 7 2 1 10 10 H 1.09002 * 109.46908 * 335.00984 * 9 7 2 11 11 C 1.50692 * 109.47178 * 215.01076 * 9 7 2 12 12 O 1.21275 * 120.00189 * 240.00237 * 11 9 7 13 13 N 1.34779 * 120.00048 * 59.99654 * 11 9 7 14 14 C 1.39452 * 120.00035 * 185.18350 * 13 11 9 15 15 C 1.39030 * 119.68091 * 174.81522 * 14 13 11 16 16 C 1.38355 * 119.11241 * 179.97438 * 15 14 13 17 17 C 1.38931 * 118.48609 * 0.02562 * 16 15 14 18 18 Cl 1.73608 * 120.35447 * 179.97438 * 17 16 15 19 19 C 1.38173 * 119.28676 * 359.97438 * 17 16 15 20 20 N 1.31940 * 120.82747 * 359.74164 * 19 17 16 21 21 C 1.50704 * 109.47067 * 95.01004 * 9 7 2 22 22 C 1.38231 * 119.99966 * 54.40757 * 21 9 7 23 23 C 1.38236 * 119.99891 * 179.78655 * 22 21 9 24 24 C 1.38229 * 120.00126 * 0.44263 * 23 22 21 25 25 C 1.38243 * 119.99941 * 359.81060 * 24 23 22 26 26 C 1.38231 * 119.99650 * 359.97438 * 25 24 23 27 27 H 0.97000 * 119.99889 * 0.02562 * 1 2 3 28 28 H 0.96999 * 120.00246 * 5.19411 * 13 11 9 29 29 H 1.07996 * 120.44244 * 359.96770 * 15 14 13 30 30 H 1.08005 * 120.75659 * 180.02562 * 16 15 14 31 31 H 1.07997 * 119.58690 * 179.97438 * 19 17 16 32 32 H 1.08004 * 120.00177 * 359.97438 * 22 21 9 33 33 H 1.08005 * 119.99959 * 180.27205 * 23 22 21 34 34 H 1.07998 * 120.00490 * 179.83472 * 24 23 22 35 35 H 1.07993 * 120.00023 * 179.97438 * 25 24 23 36 36 H 1.08000 * 119.99893 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0814 -1.1958 0.0825 9 6 1.2554 -2.4967 -0.1134 10 1 0.2367 -2.3630 0.2506 11 6 1.9496 -3.5492 0.7119 12 8 2.3742 -4.5536 0.1811 13 7 2.0987 -3.3744 2.0400 14 6 2.8344 -4.2945 2.7862 15 6 3.0755 -4.0522 4.1338 16 6 3.8064 -4.9732 4.8631 17 6 4.2737 -6.1102 4.2159 18 17 5.1963 -7.2972 5.0841 19 6 3.9963 -6.2862 2.8737 20 7 3.2917 -5.3925 2.2061 21 6 1.2205 -2.9316 -1.5559 22 6 2.3979 -3.0528 -2.2699 23 6 2.3662 -3.4560 -3.5918 24 6 1.1565 -3.7291 -4.2023 25 6 -0.0214 -3.6029 -3.4897 26 6 0.0107 -3.2040 -2.1666 27 1 -0.4850 0.8401 -0.0004 28 1 1.6941 -2.6086 2.4768 29 1 2.6975 -3.1570 4.6050 30 1 4.0090 -4.8118 5.9116 31 1 4.3575 -7.1681 2.3657 32 1 3.3428 -2.8355 -1.7942 33 1 3.2865 -3.5550 -4.1484 34 1 1.1315 -4.0416 -5.2358 35 1 -0.9665 -3.8158 -3.9668 36 1 -0.9095 -3.1057 -1.6098 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351116128.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:43 Heat of formation + Delta-G solvation = 11.226671 kcal Electronic energy + Delta-G solvation = -22973.631004 eV Core-core repulsion = 19448.126652 eV Total energy + Delta-G solvation = -3525.504352 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.072 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.80597 -40.47388 -39.25286 -37.55699 -35.70611 -35.49434 -33.46589 -32.91892 -31.55572 -30.94082 -29.02108 -26.04630 -25.04213 -24.21509 -23.23310 -22.40786 -21.04578 -19.16476 -18.71107 -18.00860 -17.63608 -17.36881 -16.84424 -16.26183 -16.16729 -15.90671 -15.53301 -15.39409 -14.83440 -14.70014 -14.22026 -14.07481 -13.96531 -13.59279 -13.48623 -13.32219 -13.08811 -12.88891 -12.78641 -12.26246 -12.15091 -11.97610 -11.69741 -11.45994 -11.29074 -10.91985 -10.87803 -10.69052 -10.01878 -9.57510 -9.29785 -9.15606 -8.24381 -6.35713 -0.08531 0.22745 0.73403 0.76872 1.08051 1.42089 1.45875 1.53316 1.85739 2.11917 2.40632 2.80721 3.04630 3.22166 3.44208 3.79946 3.89501 3.97808 4.20457 4.28531 4.36135 4.44493 4.50236 4.64683 4.77642 4.85556 4.91870 4.94016 5.08578 5.21147 5.33737 5.42365 5.62059 5.70017 5.77017 5.81294 5.90948 6.19146 6.24538 6.40503 6.70158 7.02099 7.31266 7.46968 8.83753 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.013047 B = 0.004031 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.503442 B = 6944.687341 C = 8470.673956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.041 3.959 3 Si 0.952 3.048 4 H -0.284 1.284 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.519 4.519 8 H 0.051 0.949 9 C 0.055 3.945 10 H 0.076 0.924 11 C 0.517 3.483 12 O -0.523 6.523 13 N -0.648 5.648 14 C 0.348 3.652 15 C -0.191 4.191 16 C -0.029 4.029 17 C -0.129 4.129 18 Cl -0.051 7.051 19 C 0.133 3.867 20 N -0.509 5.509 21 C -0.042 4.042 22 C -0.109 4.109 23 C -0.135 4.135 24 C -0.141 4.141 25 C -0.129 4.129 26 C -0.142 4.142 27 H 0.270 0.730 28 H 0.431 0.569 29 H 0.175 0.825 30 H 0.182 0.818 31 H 0.171 0.829 32 H 0.093 0.907 33 H 0.135 0.865 34 H 0.147 0.853 35 H 0.141 0.859 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.513 -7.107 7.646 11.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.161 4.161 3 Si 0.778 3.222 4 H -0.210 1.210 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.069 0.931 9 C 0.034 3.966 10 H 0.094 0.906 11 C 0.306 3.694 12 O -0.396 6.396 13 N -0.294 5.294 14 C 0.116 3.884 15 C -0.214 4.214 16 C -0.055 4.055 17 C -0.159 4.159 18 Cl -0.023 7.023 19 C -0.026 4.026 20 N -0.224 5.224 21 C -0.043 4.043 22 C -0.127 4.127 23 C -0.153 4.153 24 C -0.159 4.159 25 C -0.147 4.147 26 C -0.160 4.160 27 H 0.079 0.921 28 H 0.270 0.730 29 H 0.192 0.808 30 H 0.199 0.801 31 H 0.188 0.812 32 H 0.111 0.889 33 H 0.152 0.848 34 H 0.165 0.835 35 H 0.159 0.841 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.485 -7.849 6.367 11.057 hybrid contribution 0.348 1.407 0.994 1.757 sum 4.833 -6.442 7.361 10.910 Atomic orbital electron populations 1.69953 1.06990 1.28217 1.48766 1.25518 0.95493 1.01847 0.93287 0.85640 0.79012 0.79471 0.78090 1.20999 1.20143 1.19111 1.20693 0.92681 0.89297 1.53002 0.93101 1.18040 0.98576 0.91603 0.88422 0.90573 1.21869 0.78520 0.87013 0.81977 1.90667 1.47753 1.29843 1.71373 1.43732 1.51038 1.26162 1.08441 1.19144 0.91190 0.88415 0.89604 1.21815 1.04268 1.03693 0.91624 1.21630 0.92290 0.89812 1.01811 1.21962 1.04291 0.95519 0.94159 1.98357 1.71991 1.56109 1.75807 1.22875 0.92481 0.97205 0.90036 1.67798 1.12907 1.02833 1.38904 1.20095 0.93258 0.94000 0.96956 1.20835 0.97311 0.99689 0.94883 1.21324 0.99083 1.00403 0.94508 1.21287 0.91982 1.01934 1.00723 1.21317 0.99300 1.00219 0.93855 1.21160 0.97113 1.01331 0.96381 0.92104 0.72962 0.80779 0.80077 0.81201 0.88880 0.84760 0.83506 0.84125 0.87219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.53 12.77 21.45 0.27 -46.25 16 2 C 0.04 2.04 5.45 84.66 0.46 2.50 16 3 Si 0.95 39.92 29.54 68.60 2.03 41.95 16 4 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 5 H -0.28 -11.17 7.11 99.48 0.71 -10.47 16 6 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 7 C -0.52 -25.83 7.55 25.60 0.19 -25.64 16 8 H 0.05 2.60 7.82 -2.91 -0.02 2.58 16 9 C 0.05 2.64 2.45 -13.03 -0.03 2.60 16 10 H 0.08 3.87 6.99 -2.39 -0.02 3.86 16 11 C 0.52 23.66 7.00 87.65 0.61 24.27 16 12 O -0.52 -26.44 13.66 -3.01 -0.04 -26.48 16 13 N -0.65 -24.46 5.27 -308.44 -1.62 -26.09 16 14 C 0.35 11.88 7.42 132.90 0.99 12.86 16 15 C -0.19 -4.57 9.94 22.49 0.22 -4.35 16 16 C -0.03 -0.59 9.97 22.46 0.22 -0.37 16 17 C -0.13 -3.00 6.34 22.42 0.14 -2.86 16 18 Cl -0.05 -0.99 28.99 -2.72 -0.08 -1.07 16 19 C 0.13 3.90 10.97 84.66 0.93 4.83 16 20 N -0.51 -19.13 7.89 -192.94 -1.52 -20.65 16 21 C -0.04 -1.99 4.31 -19.87 -0.09 -2.08 16 22 C -0.11 -4.95 8.28 22.27 0.18 -4.76 16 23 C -0.14 -5.13 10.05 22.27 0.22 -4.91 16 24 C -0.14 -4.82 10.05 22.27 0.22 -4.60 16 25 C -0.13 -4.69 10.05 22.27 0.22 -4.47 16 26 C -0.14 -6.15 9.67 22.27 0.22 -5.94 16 27 H 0.27 13.24 8.31 -92.71 -0.77 12.47 16 28 H 0.43 14.33 8.66 -92.71 -0.80 13.53 16 29 H 0.17 3.04 8.06 -2.91 -0.02 3.01 16 30 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 31 H 0.17 4.37 8.06 -2.91 -0.02 4.35 16 32 H 0.09 4.42 7.91 -2.91 -0.02 4.40 16 33 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 34 H 0.15 3.79 8.06 -2.91 -0.02 3.77 16 35 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 36 H 0.11 4.67 7.95 -2.91 -0.02 4.65 16 Total: -1.00 -64.57 334.92 4.08 -60.49 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: 0.32 Total: 31.00 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: 4.73 Total: -12.90 kcal Atomic # 7 Polarization: -90.12 SS G_CDS: -2.87 Total: -92.99 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.04 Total: -26.48 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Total: -64.57 4.08 -60.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351116128.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.718 kcal (2) G-P(sol) polarization free energy of solvation -64.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds