Wall clock time and date at job start Tue Mar 31 2020 10:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86807 * 119.99758 * 2 1 4 4 H 1.48498 * 109.47226 * 240.00133 * 3 2 1 5 5 H 1.48490 * 109.46969 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46650 * 120.00483 * 3 2 1 7 7 C 1.38726 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00097 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00043 * 359.97438 * 7 2 1 10 10 C 1.76196 * 99.99988 * 185.12168 * 9 7 2 11 11 C 1.39234 * 120.01859 * 265.53155 * 10 9 7 12 12 C 1.38143 * 120.21321 * 179.97438 * 11 10 9 13 13 C 1.38073 * 120.25068 * 359.73779 * 12 11 10 14 14 C 1.39680 * 120.02848 * 0.51760 * 13 12 11 15 15 C 1.47748 * 120.10595 * 179.76580 * 14 13 12 16 16 O 1.21466 * 120.00457 * 179.71750 * 15 14 13 17 17 O 1.34716 * 119.99479 * 359.72185 * 15 14 13 18 18 C 1.45199 * 116.99366 * 180.02562 * 17 15 14 19 19 C 1.50701 * 109.46827 * 179.97438 * 18 17 15 20 20 C 1.38392 * 120.00148 * 0.02562 * 19 18 17 21 21 N 1.32130 * 119.99907 * 180.02562 * 20 19 18 22 22 C 1.32149 * 119.99697 * 359.97438 * 21 20 19 23 23 C 1.38342 * 120.00720 * 0.25498 * 22 21 20 24 24 N 1.32128 * 120.00491 * 180.02562 * 19 18 17 25 25 C 1.38822 * 120.02246 * 85.51117 * 10 9 7 26 26 H 0.96995 * 120.00183 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.89121 * 0.02562 * 11 10 9 28 28 H 1.08002 * 119.87194 * 180.02562 * 12 11 10 29 29 H 1.07994 * 119.98271 * 180.25798 * 13 12 11 30 30 H 1.09000 * 109.47477 * 60.00435 * 18 17 15 31 31 H 1.09000 * 109.47429 * 299.99478 * 18 17 15 32 32 H 1.08005 * 120.00358 * 0.03982 * 20 19 18 33 33 H 1.08008 * 119.99299 * 179.97438 * 22 21 20 34 34 H 1.07998 * 120.00408 * 179.72583 * 23 22 21 35 35 H 1.08005 * 120.12195 * 0.03987 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0099 -1.2014 -0.0005 8 1 3.0900 -1.2014 -0.0010 9 16 1.1289 -2.7274 -0.0005 10 6 2.4728 -3.8565 0.1536 11 6 3.0362 -4.4282 -0.9841 12 6 4.0903 -5.3135 -0.8679 13 6 4.5960 -5.6335 0.3763 14 6 4.0351 -5.0701 1.5249 15 6 4.5716 -5.4153 2.8575 16 8 4.0858 -4.9204 3.8547 17 8 5.5997 -6.2791 2.9666 18 6 6.0748 -6.5723 4.3069 19 6 7.2188 -7.5504 4.2316 20 6 7.6501 -8.0174 3.0023 21 7 8.6528 -8.8753 2.9363 22 6 9.2440 -9.2870 4.0442 23 6 8.8098 -8.8239 5.2733 24 7 7.8101 -7.9622 5.3391 25 6 2.9708 -4.1762 1.4093 26 1 -0.4850 0.8400 0.0004 27 1 2.6484 -4.1781 -1.9605 28 1 4.5234 -5.7534 -1.7541 29 1 5.4228 -6.3229 0.4618 30 1 5.2645 -7.0060 4.8929 31 1 6.4142 -5.6517 4.7817 32 1 7.1673 -7.6804 2.0969 33 1 10.0634 -9.9887 3.9902 34 1 9.2901 -9.1638 6.1789 35 1 2.5355 -3.7345 2.2936 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361301231.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:34 Heat of formation + Delta-G solvation = -10.042538 kcal Electronic energy + Delta-G solvation = -21764.045879 eV Core-core repulsion = 18239.662932 eV Total energy + Delta-G solvation = -3524.382948 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.067 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.55123 -40.49365 -38.36887 -36.63581 -34.80702 -32.74302 -32.54801 -31.16130 -30.65012 -28.04430 -25.61120 -25.08811 -24.32482 -23.00374 -22.36628 -20.87404 -18.58147 -17.97521 -17.58049 -17.16463 -17.02109 -16.76078 -16.23743 -15.54102 -15.20833 -14.92266 -14.87886 -14.53237 -14.06583 -13.65081 -13.57401 -13.04416 -12.99558 -12.71317 -12.40970 -12.02747 -11.71308 -11.70190 -11.26608 -11.21333 -11.10442 -11.05216 -10.76138 -10.52685 -9.98443 -9.64213 -9.50492 -9.20037 -9.10105 -8.77237 -8.10765 -6.77120 -6.32501 -4.07457 0.31089 0.68333 0.91003 1.57137 2.19336 2.63217 3.15517 3.20447 3.23441 3.24197 3.39233 3.61640 3.91759 3.96721 4.03677 4.18925 4.33064 4.67351 4.73071 4.79345 4.92211 5.03636 5.07392 5.12479 5.20966 5.25208 5.42082 5.61839 5.74211 5.85532 5.90813 6.12583 6.17362 6.47089 6.56769 6.80568 6.83183 7.06778 7.31726 7.53304 7.70225 8.28201 9.13271 10.74112 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.023098 B = 0.002572 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.935036 B =10884.961595 C =11316.887525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.074 3.926 3 Si 0.921 3.079 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.076 0.924 9 S -0.030 6.030 10 C -0.112 4.112 11 C -0.043 4.043 12 C -0.146 4.146 13 C -0.065 4.065 14 C -0.144 4.144 15 C 0.519 3.481 16 O -0.499 6.499 17 O -0.357 6.357 18 C 0.124 3.876 19 C 0.077 3.923 20 C 0.073 3.927 21 N -0.435 5.435 22 C 0.046 3.954 23 C 0.055 3.945 24 N -0.433 5.433 25 C -0.013 4.013 26 H 0.271 0.729 27 H 0.134 0.866 28 H 0.128 0.872 29 H 0.130 0.870 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.180 0.820 33 H 0.172 0.828 34 H 0.174 0.826 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.882 -17.311 5.304 24.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.135 4.135 3 Si 0.747 3.253 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.670 4.670 8 H 0.094 0.906 9 S 0.204 5.796 10 C -0.222 4.222 11 C -0.064 4.064 12 C -0.166 4.166 13 C -0.084 4.084 14 C -0.147 4.147 15 C 0.364 3.636 16 O -0.386 6.386 17 O -0.274 6.274 18 C 0.049 3.951 19 C -0.063 4.063 20 C -0.086 4.086 21 N -0.150 5.150 22 C -0.114 4.114 23 C -0.105 4.105 24 N -0.150 5.150 25 C -0.034 4.034 26 H 0.081 0.919 27 H 0.152 0.848 28 H 0.146 0.854 29 H 0.148 0.852 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.197 0.803 33 H 0.189 0.811 34 H 0.191 0.809 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 14.386 -17.197 5.529 23.092 hybrid contribution 1.993 1.161 0.391 2.340 sum 16.379 -16.036 5.919 23.674 Atomic orbital electron populations 1.69970 1.05907 1.27873 1.46727 1.25003 0.95130 0.99131 0.94247 0.86174 0.79253 0.80856 0.79037 1.19783 1.20708 1.19784 1.22802 0.94868 0.90175 1.59152 0.90609 1.83656 1.03936 0.97043 1.94956 1.22835 1.03315 1.02495 0.93568 1.22076 0.92751 0.92598 0.98991 1.21149 0.98236 1.00046 0.97157 1.21335 0.98067 0.97328 0.91650 1.19050 1.01390 1.04865 0.89384 1.21307 0.76582 0.75376 0.90288 1.90867 1.58088 1.50802 1.38869 1.86397 1.48795 1.60278 1.31927 1.21261 0.93897 0.97810 0.82130 1.21727 0.96700 0.97126 0.90752 1.23692 0.92927 0.92725 0.99276 1.68562 1.06413 1.08634 1.31351 1.23868 0.99494 0.98847 0.89191 1.23751 0.93434 0.93639 0.99647 1.67995 1.07066 1.09341 1.30578 1.21989 0.91385 0.91427 0.98615 0.91934 0.84779 0.85443 0.85178 0.88232 0.88237 0.80273 0.81091 0.80875 0.84065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.03 13.22 55.49 0.73 -24.30 16 2 C 0.07 2.04 5.49 -17.46 -0.10 1.95 16 3 Si 0.92 21.11 29.55 -169.99 -5.02 16.08 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 7 C -0.52 -14.40 9.46 30.91 0.29 -14.11 16 8 H 0.08 2.06 7.79 -52.48 -0.41 1.65 16 9 S -0.03 -0.76 21.41 -107.50 -2.30 -3.06 16 10 C -0.11 -2.28 5.45 -39.00 -0.21 -2.49 16 11 C -0.04 -0.73 9.79 -39.25 -0.38 -1.12 16 12 C -0.15 -1.99 10.02 -39.68 -0.40 -2.39 16 13 C -0.07 -0.87 9.62 -39.10 -0.38 -1.25 16 14 C -0.14 -2.31 5.87 -105.01 -0.62 -2.93 16 15 C 0.52 7.93 7.90 34.62 0.27 8.20 16 16 O -0.50 -8.92 16.13 -19.24 -0.31 -9.23 16 17 O -0.36 -4.29 7.94 -40.54 -0.32 -4.61 16 18 C 0.12 1.33 6.03 36.01 0.22 1.54 16 19 C 0.08 0.78 6.79 -82.41 -0.56 0.22 16 20 C 0.07 0.72 10.56 -17.37 -0.18 0.53 16 21 N -0.44 -4.21 10.50 -13.05 -0.14 -4.35 16 22 C 0.05 0.32 11.22 -17.38 -0.20 0.12 16 23 C 0.06 0.39 11.22 -17.38 -0.20 0.19 16 24 N -0.43 -4.29 10.42 -9.29 -0.10 -4.38 16 25 C -0.01 -0.25 9.34 -38.91 -0.36 -0.61 16 26 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 27 H 0.13 2.15 8.06 -52.49 -0.42 1.73 16 28 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.13 1.33 7.60 -52.49 -0.40 0.94 16 30 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.18 1.56 6.99 -52.48 -0.37 1.19 16 33 H 0.17 0.58 8.06 -52.48 -0.42 0.16 16 34 H 0.17 0.58 8.06 -52.49 -0.42 0.16 16 35 H 0.14 2.90 7.65 -52.48 -0.40 2.49 16 LS Contribution 336.11 15.07 5.07 5.07 Total: -1.00 -32.49 336.11 -8.44 -40.92 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -3.25 Total: 0.00 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: -2.80 Total: -12.14 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 0.50 Total: -33.03 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.63 Total: -13.84 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -0.76 SS G_CDS: -2.30 Total: -3.06 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.49 -8.44 -40.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361301231.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.878 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds