Wall clock time and date at job start Tue Mar 31 2020 10:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86807 * 119.99758 * 2 1 4 4 H 1.48498 * 109.47226 * 240.00133 * 3 2 1 5 5 H 1.48490 * 109.46969 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46650 * 120.00483 * 3 2 1 7 7 C 1.38726 * 120.00130 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00097 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00043 * 359.97438 * 7 2 1 10 10 C 1.76196 * 99.99988 * 185.12168 * 9 7 2 11 11 C 1.39234 * 120.01859 * 265.53155 * 10 9 7 12 12 C 1.38143 * 120.21321 * 179.97438 * 11 10 9 13 13 C 1.38073 * 120.25068 * 359.73779 * 12 11 10 14 14 C 1.39680 * 120.02848 * 0.51760 * 13 12 11 15 15 C 1.47748 * 120.10595 * 179.76580 * 14 13 12 16 16 O 1.21466 * 120.00457 * 179.71750 * 15 14 13 17 17 O 1.34716 * 119.99479 * 359.72185 * 15 14 13 18 18 C 1.45199 * 116.99366 * 180.02562 * 17 15 14 19 19 C 1.50701 * 109.46827 * 179.97438 * 18 17 15 20 20 C 1.38392 * 120.00148 * 0.02562 * 19 18 17 21 21 N 1.32130 * 119.99907 * 180.02562 * 20 19 18 22 22 C 1.32149 * 119.99697 * 359.97438 * 21 20 19 23 23 C 1.38342 * 120.00720 * 0.25498 * 22 21 20 24 24 N 1.32128 * 120.00491 * 180.02562 * 19 18 17 25 25 C 1.38822 * 120.02246 * 85.51117 * 10 9 7 26 26 H 0.96995 * 120.00183 * 359.97438 * 1 2 3 27 27 H 1.07997 * 119.89121 * 0.02562 * 11 10 9 28 28 H 1.08002 * 119.87194 * 180.02562 * 12 11 10 29 29 H 1.07994 * 119.98271 * 180.25798 * 13 12 11 30 30 H 1.09000 * 109.47477 * 60.00435 * 18 17 15 31 31 H 1.09000 * 109.47429 * 299.99478 * 18 17 15 32 32 H 1.08005 * 120.00358 * 0.03982 * 20 19 18 33 33 H 1.08008 * 119.99299 * 179.97438 * 22 21 20 34 34 H 1.07998 * 120.00408 * 179.72583 * 23 22 21 35 35 H 1.08005 * 120.12195 * 0.03987 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6966 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0099 -1.2014 -0.0005 8 1 3.0900 -1.2014 -0.0010 9 16 1.1289 -2.7274 -0.0005 10 6 2.4728 -3.8565 0.1536 11 6 3.0362 -4.4282 -0.9841 12 6 4.0903 -5.3135 -0.8679 13 6 4.5960 -5.6335 0.3763 14 6 4.0351 -5.0701 1.5249 15 6 4.5716 -5.4153 2.8575 16 8 4.0858 -4.9204 3.8547 17 8 5.5997 -6.2791 2.9666 18 6 6.0748 -6.5723 4.3069 19 6 7.2188 -7.5504 4.2316 20 6 7.6501 -8.0174 3.0023 21 7 8.6528 -8.8753 2.9363 22 6 9.2440 -9.2870 4.0442 23 6 8.8098 -8.8239 5.2733 24 7 7.8101 -7.9622 5.3391 25 6 2.9708 -4.1762 1.4093 26 1 -0.4850 0.8400 0.0004 27 1 2.6484 -4.1781 -1.9605 28 1 4.5234 -5.7534 -1.7541 29 1 5.4228 -6.3229 0.4618 30 1 5.2645 -7.0060 4.8929 31 1 6.4142 -5.6517 4.7817 32 1 7.1673 -7.6804 2.0969 33 1 10.0634 -9.9887 3.9902 34 1 9.2901 -9.1638 6.1789 35 1 2.5355 -3.7345 2.2936 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361301231.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:34 Heat of formation + Delta-G solvation = -29.936741 kcal Electronic energy + Delta-G solvation = -21764.908557 eV Core-core repulsion = 18239.662932 eV Total energy + Delta-G solvation = -3525.245625 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.067 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.24986 -41.61553 -39.63592 -37.79786 -35.47074 -34.64908 -33.49394 -32.39472 -31.97172 -28.84655 -27.73676 -25.79439 -25.39872 -23.91423 -23.57850 -22.07457 -20.11046 -19.17942 -18.76646 -18.05680 -17.85924 -17.79067 -17.21196 -16.92604 -16.65568 -16.17133 -16.00209 -15.86011 -15.16364 -14.83027 -14.68466 -14.59462 -13.85671 -13.82370 -13.54242 -13.25251 -13.10911 -12.95870 -12.70575 -12.68602 -12.49831 -12.41588 -11.97918 -11.83286 -11.72673 -11.21578 -10.79445 -10.27318 -10.13336 -10.06901 -9.73694 -8.80945 -8.39005 -6.19144 -0.38002 -0.29619 0.05571 0.21373 1.12594 1.29259 1.39000 1.39258 1.46627 1.68654 2.23561 2.62223 2.69952 2.88692 2.94414 3.28758 3.41128 3.43180 3.66828 3.68487 3.90769 4.03647 4.06752 4.07683 4.25743 4.34157 4.38963 4.44977 4.59712 4.64577 4.86768 5.03639 5.18228 5.31494 5.35161 5.38918 5.46490 5.81016 6.15987 6.20262 6.50543 6.71382 7.01676 8.67700 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.023098 B = 0.002572 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.935036 B =10884.961595 C =11316.887525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.020 3.980 3 Si 0.990 3.010 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.537 4.537 8 H 0.069 0.931 9 S -0.089 6.089 10 C -0.133 4.133 11 C -0.048 4.048 12 C -0.125 4.125 13 C -0.041 4.041 14 C -0.147 4.147 15 C 0.527 3.473 16 O -0.532 6.532 17 O -0.338 6.338 18 C 0.126 3.874 19 C 0.061 3.939 20 C 0.063 3.937 21 N -0.457 5.457 22 C 0.054 3.946 23 C 0.059 3.941 24 N -0.458 5.458 25 C -0.034 4.034 26 H 0.274 0.726 27 H 0.139 0.861 28 H 0.178 0.822 29 H 0.176 0.824 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.186 0.814 33 H 0.210 0.790 34 H 0.211 0.789 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.552 -19.352 4.743 27.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.185 4.185 3 Si 0.812 3.188 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.685 4.685 8 H 0.087 0.913 9 S 0.146 5.854 10 C -0.244 4.244 11 C -0.069 4.069 12 C -0.145 4.145 13 C -0.059 4.059 14 C -0.150 4.150 15 C 0.373 3.627 16 O -0.423 6.423 17 O -0.254 6.254 18 C 0.051 3.949 19 C -0.077 4.077 20 C -0.095 4.095 21 N -0.172 5.172 22 C -0.107 4.107 23 C -0.101 4.101 24 N -0.174 5.174 25 C -0.055 4.055 26 H 0.083 0.917 27 H 0.157 0.843 28 H 0.195 0.805 29 H 0.193 0.807 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.203 0.797 33 H 0.226 0.774 34 H 0.227 0.773 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 18.052 -19.252 4.945 26.851 hybrid contribution 1.047 1.531 0.631 1.959 sum 19.100 -17.721 5.576 26.644 Atomic orbital electron populations 1.70094 1.07483 1.28867 1.47751 1.25984 0.96030 1.02823 0.93658 0.85125 0.78057 0.76324 0.79323 1.18561 1.19716 1.19512 1.23053 0.94731 0.91608 1.59061 0.91259 1.83545 1.08178 0.98359 1.95319 1.22471 1.03356 1.03165 0.95428 1.22191 0.93706 0.93116 0.97899 1.21609 0.96011 0.97828 0.99016 1.21862 0.97777 0.95945 0.90271 1.19082 1.00569 1.04337 0.91024 1.21155 0.76761 0.75250 0.89541 1.90859 1.59324 1.52197 1.39889 1.86357 1.47260 1.58877 1.32929 1.21314 0.94382 0.98115 0.81072 1.21532 0.97030 0.97835 0.91346 1.23761 0.93391 0.93147 0.99209 1.68597 1.06782 1.09079 1.32724 1.24532 0.99448 0.98259 0.88424 1.24411 0.92223 0.92198 1.01288 1.67974 1.08244 1.10481 1.30751 1.21675 0.93236 0.93360 0.97234 0.91699 0.84266 0.80509 0.80700 0.88347 0.88606 0.79675 0.77383 0.77271 0.87006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.95 13.22 21.64 0.29 -53.66 16 2 C 0.02 1.16 5.49 84.84 0.47 1.62 16 3 Si 0.99 43.98 29.55 68.60 2.03 46.01 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.54 -30.83 9.46 67.94 0.64 -30.18 16 8 H 0.07 3.91 7.79 -2.91 -0.02 3.89 16 9 S -0.09 -4.71 21.41 -56.49 -1.21 -5.92 16 10 C -0.13 -5.61 5.45 22.65 0.12 -5.49 16 11 C -0.05 -1.59 9.79 22.49 0.22 -1.37 16 12 C -0.13 -2.91 10.02 22.21 0.22 -2.69 16 13 C -0.04 -0.93 9.62 22.58 0.22 -0.72 16 14 C -0.15 -4.60 5.87 -20.12 -0.12 -4.72 16 15 C 0.53 15.86 7.90 70.34 0.56 16.42 16 16 O -0.53 -19.66 16.13 19.94 0.32 -19.33 16 17 O -0.34 -7.61 7.94 -56.26 -0.45 -8.05 16 18 C 0.13 2.62 6.03 71.24 0.43 3.05 16 19 C 0.06 1.16 6.79 42.55 0.29 1.45 16 20 C 0.06 1.10 10.56 84.68 0.89 2.00 16 21 N -0.46 -7.61 10.50 -195.21 -2.05 -9.66 16 22 C 0.05 0.56 11.22 84.67 0.95 1.51 16 23 C 0.06 0.64 11.22 84.67 0.95 1.59 16 24 N -0.46 -8.23 10.42 -183.29 -1.91 -10.14 16 25 C -0.03 -1.36 9.34 22.71 0.21 -1.14 16 26 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 27 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 28 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 29 H 0.18 2.55 7.60 -2.91 -0.02 2.53 16 30 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.19 2.74 6.99 -2.91 -0.02 2.72 16 33 H 0.21 0.43 8.06 -2.91 -0.02 0.41 16 34 H 0.21 0.54 8.06 -2.91 -0.02 0.52 16 35 H 0.11 5.03 7.65 -2.91 -0.02 5.00 16 Total: -1.00 -75.56 336.11 4.20 -71.36 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 1.13 Total: 8.08 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: 6.05 Total: -18.68 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -3.67 Total: -73.46 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.12 Total: -27.39 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -4.71 SS G_CDS: -1.21 Total: -5.92 kcal Total: -75.56 4.20 -71.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361301231.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.422 kcal (2) G-P(sol) polarization free energy of solvation -75.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds