Wall clock time and date at job start Tue Mar 31 2020 10:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86799 * 120.00315 * 2 1 4 4 H 1.48498 * 109.47323 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47004 * 299.99792 * 3 2 1 6 6 H 1.48497 * 109.47055 * 59.99787 * 3 2 1 7 7 C 1.39938 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99927 * 196.79868 * 7 2 1 9 9 C 1.41406 * 120.00230 * 16.79604 * 7 2 1 10 10 C 1.40771 * 120.21108 * 205.14213 * 9 7 2 11 11 C 1.37648 * 119.89339 * 180.02562 * 10 9 7 12 12 C 1.38523 * 120.32547 * 359.75229 * 11 10 9 13 13 C 1.39279 * 120.42345 * 0.50515 * 12 11 10 14 14 N 1.39831 * 119.94972 * 179.76568 * 13 12 11 15 15 C 1.34772 * 120.00012 * 325.52982 * 14 13 12 16 16 O 1.21635 * 120.00108 * 354.89312 * 15 14 13 17 17 C 1.47128 * 119.99649 * 174.89420 * 15 14 13 18 18 C 1.36644 * 125.15960 * 180.02562 * 17 15 14 19 19 C 1.36779 * 114.74011 * 180.02562 * 18 17 15 20 20 C 1.36621 * 114.75033 * 359.97438 * 19 18 17 21 21 C 1.47158 * 125.16173 * 179.97438 * 20 19 18 22 22 N 1.34774 * 120.00028 * 179.97438 * 21 20 19 23 23 O 1.21629 * 119.99890 * 359.97438 * 21 20 19 24 24 S 1.75831 * 109.67808 * 0.02562 * 20 19 18 25 25 C 1.38311 * 120.09662 * 359.48968 * 13 12 11 26 26 H 0.97002 * 119.99687 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.05695 * 0.02562 * 10 9 7 28 28 H 1.08001 * 119.83762 * 180.02562 * 11 10 9 29 29 H 1.07994 * 119.79017 * 180.25561 * 12 11 10 30 30 H 0.96999 * 119.99884 * 145.52874 * 14 13 12 31 31 H 1.08004 * 122.62835 * 0.26958 * 18 17 15 32 32 H 1.08006 * 122.62591 * 180.02562 * 19 18 17 33 33 H 0.97000 * 119.99883 * 359.97438 * 22 21 20 34 34 H 0.97000 * 120.00368 * 179.97438 * 22 21 20 35 35 H 1.08005 * 120.15817 * 180.22924 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8836 2.3964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0533 -1.2320 0.2698 9 6 1.3461 -2.4103 -0.3549 10 6 1.8187 -3.6479 0.1212 11 6 1.1697 -4.8104 -0.2283 12 6 0.0500 -4.7687 -1.0428 13 6 -0.4259 -3.5520 -1.5257 14 7 -1.5542 -3.5219 -2.3511 15 6 -1.7784 -4.5250 -3.2228 16 8 -0.9538 -5.4088 -3.3583 17 6 -3.0208 -4.5509 -4.0106 18 6 -3.3555 -5.5137 -4.9206 19 6 -4.5642 -5.3270 -5.5331 20 6 -5.2404 -4.2086 -5.1351 21 6 -6.5557 -3.7878 -5.6434 22 7 -7.1300 -2.6617 -5.1759 23 8 -7.1245 -4.4562 -6.4855 24 16 -4.2999 -3.3476 -3.9244 25 6 0.2125 -2.3732 -1.1854 26 1 -0.4850 0.8401 -0.0004 27 1 2.6889 -3.6853 0.7597 28 1 1.5328 -5.7594 0.1378 29 1 -0.4549 -5.6857 -1.3082 30 1 -2.1755 -2.7790 -2.2963 31 1 -2.7176 -6.3581 -5.1363 32 1 -4.9539 -6.0107 -6.2729 33 1 -6.6765 -2.1289 -4.5041 34 1 -7.9969 -2.3841 -5.5112 35 1 -0.1578 -1.4289 -1.5564 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412119084.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:15 Heat of formation + Delta-G solvation = -20.123143 kcal Electronic energy + Delta-G solvation = -22113.592171 eV Core-core repulsion = 18588.772095 eV Total energy + Delta-G solvation = -3524.820076 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.067 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.00251 -39.75070 -37.69290 -36.86948 -34.43813 -34.13508 -33.40462 -30.50090 -29.59835 -28.47889 -25.88866 -25.30759 -22.46752 -21.92275 -21.31400 -20.08744 -19.48031 -18.79790 -17.62646 -17.26519 -16.75347 -16.09422 -15.67714 -15.28326 -15.10720 -14.88646 -14.80853 -14.54045 -14.00075 -13.42209 -13.26583 -12.87698 -12.71601 -12.55647 -12.42196 -11.72793 -11.42352 -11.37204 -11.18135 -10.83380 -10.74224 -10.62334 -10.18382 -10.18182 -9.84081 -9.68188 -9.33867 -9.13857 -9.09646 -8.95142 -7.46767 -7.13377 -6.78455 -4.44481 -0.16138 1.00003 1.38444 1.83162 2.60122 2.77962 2.84900 3.02608 3.03164 3.08566 3.14910 3.33340 3.43925 3.88033 4.47592 4.56013 4.80995 4.91832 5.08436 5.58138 5.63849 5.77975 5.98215 6.19290 6.30232 6.51871 6.54820 6.75740 6.80952 6.93453 6.97742 7.16269 7.48153 7.54397 7.75619 7.82884 7.94033 8.00393 8.19421 8.37458 8.58503 8.81029 8.86235 10.11484 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.016907 B = 0.003220 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.752870 B = 8693.797706 C =10097.827541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.076 3.924 3 Si 0.908 3.092 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.461 4.461 8 H 0.080 0.920 9 C 0.120 3.880 10 C -0.224 4.224 11 C -0.085 4.085 12 C -0.226 4.226 13 C 0.141 3.859 14 N -0.654 5.654 15 C 0.575 3.425 16 O -0.503 6.503 17 C -0.206 4.206 18 C -0.080 4.080 19 C -0.059 4.059 20 C -0.251 4.251 21 C 0.598 3.402 22 N -0.849 5.849 23 O -0.529 6.529 24 S 0.189 5.811 25 C -0.179 4.179 26 H 0.279 0.721 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.399 0.601 31 H 0.163 0.837 32 H 0.160 0.840 33 H 0.401 0.599 34 H 0.410 0.590 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.144 -1.136 -7.155 14.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.200 1.200 7 C -0.491 4.491 8 H 0.098 0.902 9 C 0.117 3.883 10 C -0.244 4.244 11 C -0.103 4.103 12 C -0.247 4.247 13 C 0.050 3.950 14 N -0.297 5.297 15 C 0.360 3.640 16 O -0.380 6.380 17 C -0.328 4.328 18 C -0.113 4.113 19 C -0.093 4.093 20 C -0.373 4.373 21 C 0.383 3.617 22 N -0.413 5.413 23 O -0.407 6.407 24 S 0.457 5.543 25 C -0.200 4.200 26 H 0.090 0.910 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.120 0.880 30 H 0.234 0.766 31 H 0.180 0.820 32 H 0.177 0.823 33 H 0.230 0.770 34 H 0.242 0.758 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.223 -0.786 -6.911 14.064 hybrid contribution 0.035 0.364 -0.487 0.609 sum -12.189 -0.422 -7.398 14.264 Atomic orbital electron populations 1.69813 1.07561 1.28978 1.36139 1.25885 0.94758 1.01291 0.92118 0.86270 0.81088 0.80919 0.78513 1.18382 1.19760 1.20001 1.19580 0.97856 0.90925 1.40726 0.90214 1.17364 0.90496 0.92253 0.88184 1.21074 1.03790 0.92850 1.06712 1.20425 0.95484 0.96733 0.97702 1.20290 1.02110 0.95405 1.06881 1.17562 0.88181 0.95360 0.93876 1.43323 1.25915 1.23222 1.37254 1.17060 0.84395 0.83085 0.79460 1.90846 1.44506 1.37062 1.65548 1.25133 1.00194 1.01537 1.05946 1.20608 0.96460 0.99581 0.94630 1.20581 0.93112 0.96035 0.99533 1.24746 1.01121 1.03662 1.07750 1.17029 0.83341 0.80599 0.80767 1.43683 1.24949 1.26644 1.46008 1.90867 1.63670 1.54037 1.32113 1.83986 1.09678 1.24494 1.36161 1.21077 0.99881 0.95226 1.03811 0.91040 0.88687 0.88828 0.88029 0.76590 0.82001 0.82290 0.76992 0.75822 0.85886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.34 10.94 55.55 0.61 -18.73 16 2 C 0.08 1.83 5.16 -17.34 -0.09 1.74 16 3 Si 0.91 17.91 29.59 -169.99 -5.03 12.88 16 4 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.46 -11.79 9.05 -37.74 -0.34 -12.13 16 8 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 9 C 0.12 3.10 5.57 -106.85 -0.59 2.51 16 10 C -0.22 -5.42 9.79 -38.84 -0.38 -5.80 16 11 C -0.08 -1.92 10.02 -39.69 -0.40 -2.32 16 12 C -0.23 -5.23 8.66 -39.09 -0.34 -5.56 16 13 C 0.14 3.22 6.25 -83.79 -0.52 2.70 16 14 N -0.65 -12.14 5.32 -10.97 -0.06 -12.20 16 15 C 0.58 10.23 7.53 -12.65 -0.10 10.14 16 16 O -0.50 -10.58 14.56 5.25 0.08 -10.51 16 17 C -0.21 -2.80 6.46 -36.55 -0.24 -3.03 16 18 C -0.08 -0.96 9.88 -40.69 -0.40 -1.36 16 19 C -0.06 -0.63 9.88 -40.69 -0.40 -1.03 16 20 C -0.25 -2.67 6.46 -36.55 -0.24 -2.91 16 21 C 0.60 6.37 8.07 -12.64 -0.10 6.27 16 22 N -0.85 -5.70 8.87 30.37 0.27 -5.43 16 23 O -0.53 -7.41 17.65 5.25 0.09 -7.32 16 24 S 0.19 1.91 21.41 -107.50 -2.30 -0.39 16 25 C -0.18 -4.41 8.60 -38.67 -0.33 -4.74 16 26 H 0.28 6.09 8.30 -40.82 -0.34 5.75 16 27 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 28 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 29 H 0.10 2.31 6.47 -52.49 -0.34 1.97 16 30 H 0.40 6.33 7.93 -40.82 -0.32 6.01 16 31 H 0.16 1.81 8.04 -52.48 -0.42 1.39 16 32 H 0.16 1.49 8.04 -52.48 -0.42 1.07 16 33 H 0.40 1.96 7.93 -40.82 -0.32 1.64 16 34 H 0.41 2.03 8.93 -40.82 -0.36 1.67 16 35 H 0.12 3.06 6.17 -52.48 -0.32 2.74 16 LS Contribution 326.85 15.07 4.93 4.93 Total: -1.00 -31.12 326.85 -8.80 -39.93 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -2.91 Total: 12.38 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -4.47 Total: -15.54 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.82 Total: -36.37 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: 0.17 Total: -17.82 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.30 Total: -0.39 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.12 -8.80 -39.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412119084.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.803 kcal (2) G-P(sol) polarization free energy of solvation -31.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds