Wall clock time and date at job start Tue Mar 31 2020 10:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86799 * 120.00315 * 2 1 4 4 H 1.48498 * 109.47323 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47004 * 299.99792 * 3 2 1 6 6 H 1.48497 * 109.47055 * 59.99787 * 3 2 1 7 7 C 1.39938 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99927 * 196.79868 * 7 2 1 9 9 C 1.41406 * 120.00230 * 16.79604 * 7 2 1 10 10 C 1.40771 * 120.21108 * 205.14213 * 9 7 2 11 11 C 1.37648 * 119.89339 * 180.02562 * 10 9 7 12 12 C 1.38523 * 120.32547 * 359.75229 * 11 10 9 13 13 C 1.39279 * 120.42345 * 0.50515 * 12 11 10 14 14 N 1.39831 * 119.94972 * 179.76568 * 13 12 11 15 15 C 1.34772 * 120.00012 * 325.52982 * 14 13 12 16 16 O 1.21635 * 120.00108 * 354.89312 * 15 14 13 17 17 C 1.47128 * 119.99649 * 174.89420 * 15 14 13 18 18 C 1.36644 * 125.15960 * 180.02562 * 17 15 14 19 19 C 1.36779 * 114.74011 * 180.02562 * 18 17 15 20 20 C 1.36621 * 114.75033 * 359.97438 * 19 18 17 21 21 C 1.47158 * 125.16173 * 179.97438 * 20 19 18 22 22 N 1.34774 * 120.00028 * 179.97438 * 21 20 19 23 23 O 1.21629 * 119.99890 * 359.97438 * 21 20 19 24 24 S 1.75831 * 109.67808 * 0.02562 * 20 19 18 25 25 C 1.38311 * 120.09662 * 359.48968 * 13 12 11 26 26 H 0.97002 * 119.99687 * 0.02562 * 1 2 3 27 27 H 1.08003 * 120.05695 * 0.02562 * 10 9 7 28 28 H 1.08001 * 119.83762 * 180.02562 * 11 10 9 29 29 H 1.07994 * 119.79017 * 180.25561 * 12 11 10 30 30 H 0.96999 * 119.99884 * 145.52874 * 14 13 12 31 31 H 1.08004 * 122.62835 * 0.26958 * 18 17 15 32 32 H 1.08006 * 122.62591 * 180.02562 * 19 18 17 33 33 H 0.97000 * 119.99883 * 359.97438 * 22 21 20 34 34 H 0.97000 * 120.00368 * 179.97438 * 22 21 20 35 35 H 1.08005 * 120.15817 * 180.22924 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8836 2.3964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0533 -1.2320 0.2698 9 6 1.3461 -2.4103 -0.3549 10 6 1.8187 -3.6479 0.1212 11 6 1.1697 -4.8104 -0.2283 12 6 0.0500 -4.7687 -1.0428 13 6 -0.4259 -3.5520 -1.5257 14 7 -1.5542 -3.5219 -2.3511 15 6 -1.7784 -4.5250 -3.2228 16 8 -0.9538 -5.4088 -3.3583 17 6 -3.0208 -4.5509 -4.0106 18 6 -3.3555 -5.5137 -4.9206 19 6 -4.5642 -5.3270 -5.5331 20 6 -5.2404 -4.2086 -5.1351 21 6 -6.5557 -3.7878 -5.6434 22 7 -7.1300 -2.6617 -5.1759 23 8 -7.1245 -4.4562 -6.4855 24 16 -4.2999 -3.3476 -3.9244 25 6 0.2125 -2.3732 -1.1854 26 1 -0.4850 0.8401 -0.0004 27 1 2.6889 -3.6853 0.7597 28 1 1.5328 -5.7594 0.1378 29 1 -0.4549 -5.6857 -1.3082 30 1 -2.1755 -2.7790 -2.2963 31 1 -2.7176 -6.3581 -5.1363 32 1 -4.9539 -6.0107 -6.2729 33 1 -6.6765 -2.1289 -4.5041 34 1 -7.9969 -2.3841 -5.5112 35 1 -0.1578 -1.4289 -1.5564 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412119084.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:14 Heat of formation + Delta-G solvation = -41.395145 kcal Electronic energy + Delta-G solvation = -22114.514594 eV Core-core repulsion = 18588.772095 eV Total energy + Delta-G solvation = -3525.742499 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 316.067 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.40838 -40.70008 -39.19741 -38.08032 -36.09423 -35.17025 -34.90017 -31.75670 -31.35989 -29.99909 -27.23961 -26.89138 -23.74951 -23.11880 -22.85167 -21.71048 -20.45148 -19.95249 -19.28889 -18.20076 -17.86625 -17.55677 -16.84772 -16.64065 -16.50820 -16.28178 -16.02976 -15.96144 -15.16936 -14.98977 -14.64777 -14.28150 -14.17218 -13.80382 -13.48739 -13.45683 -13.11151 -12.82067 -12.63097 -12.41643 -12.27927 -11.89073 -11.60320 -11.54430 -11.32123 -11.06914 -10.91163 -10.81939 -10.11547 -9.78488 -9.34768 -8.91164 -8.57257 -6.35551 -1.13875 0.08249 0.45944 0.70305 0.99568 1.08602 1.42300 1.51607 1.56215 1.88517 1.95964 2.07038 2.23508 2.29827 2.74811 3.51511 3.70939 3.77484 3.99388 4.19853 4.44384 4.69403 4.78703 4.80333 4.85712 5.02118 5.09206 5.13175 5.18454 5.34317 5.70278 5.71781 5.79361 6.00380 6.07444 6.14083 6.27840 6.45259 6.65501 6.91785 6.93400 7.05005 7.05197 8.34336 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.016907 B = 0.003220 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.752870 B = 8693.797706 C =10097.827541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.040 3.960 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.496 4.496 8 H 0.076 0.924 9 C 0.093 3.907 10 C -0.245 4.245 11 C -0.083 4.083 12 C -0.239 4.239 13 C 0.147 3.853 14 N -0.653 5.653 15 C 0.579 3.421 16 O -0.542 6.542 17 C -0.248 4.248 18 C -0.063 4.063 19 C -0.066 4.066 20 C -0.246 4.246 21 C 0.597 3.403 22 N -0.827 5.827 23 O -0.565 6.565 24 S 0.252 5.748 25 C -0.199 4.199 26 H 0.290 0.710 27 H 0.103 0.897 28 H 0.122 0.878 29 H 0.104 0.896 30 H 0.412 0.588 31 H 0.165 0.835 32 H 0.173 0.827 33 H 0.413 0.587 34 H 0.422 0.578 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.551 0.065 -7.632 15.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.176 4.176 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.188 1.188 6 H -0.190 1.190 7 C -0.525 4.525 8 H 0.094 0.906 9 C 0.090 3.910 10 C -0.265 4.265 11 C -0.101 4.101 12 C -0.260 4.260 13 C 0.055 3.945 14 N -0.297 5.297 15 C 0.367 3.633 16 O -0.421 6.421 17 C -0.370 4.370 18 C -0.097 4.097 19 C -0.099 4.099 20 C -0.368 4.368 21 C 0.381 3.619 22 N -0.392 5.392 23 O -0.445 6.445 24 S 0.521 5.479 25 C -0.220 4.220 26 H 0.101 0.899 27 H 0.121 0.879 28 H 0.139 0.861 29 H 0.122 0.878 30 H 0.248 0.752 31 H 0.182 0.818 32 H 0.190 0.810 33 H 0.244 0.756 34 H 0.255 0.745 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -13.678 0.460 -7.366 15.542 hybrid contribution 0.331 -0.021 -0.366 0.494 sum -13.347 0.439 -7.733 15.432 Atomic orbital electron populations 1.69835 1.08702 1.30539 1.35461 1.26670 0.95593 1.04163 0.91163 0.85185 0.79349 0.76383 0.78960 1.18624 1.18823 1.19016 1.19810 0.98023 0.92125 1.42530 0.90584 1.17759 0.91321 0.93167 0.88796 1.21250 1.04610 0.93008 1.07607 1.20738 0.94964 0.97544 0.96895 1.20478 1.02585 0.95658 1.07255 1.17609 0.88803 0.94669 0.93439 1.43250 1.25114 1.24224 1.37124 1.17502 0.85219 0.81779 0.78813 1.90810 1.46326 1.38243 1.66735 1.24718 1.00256 1.04504 1.07484 1.20715 0.96600 0.98932 0.93414 1.20665 0.92650 0.96608 1.00015 1.24993 1.01127 1.03499 1.07173 1.17052 0.83157 0.81174 0.80503 1.43546 1.25181 1.25233 1.45243 1.90862 1.64463 1.55394 1.33828 1.83708 1.07217 1.22158 1.34798 1.21023 1.00563 0.95543 1.04894 0.89948 0.87905 0.86053 0.87752 0.75169 0.81758 0.80954 0.75647 0.74461 0.86628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.66 10.94 21.82 0.24 -39.43 16 2 C 0.04 1.89 5.16 85.25 0.44 2.33 16 3 Si 0.98 36.33 29.59 68.60 2.03 38.36 16 4 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 5 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 6 H -0.27 -9.39 7.11 99.48 0.71 -8.68 16 7 C -0.50 -25.90 9.05 23.46 0.21 -25.69 16 8 H 0.08 3.87 7.90 -2.91 -0.02 3.85 16 9 C 0.09 4.91 5.57 -21.31 -0.12 4.79 16 10 C -0.24 -12.07 9.79 22.75 0.22 -11.85 16 11 C -0.08 -3.78 10.02 22.20 0.22 -3.56 16 12 C -0.24 -11.16 8.66 22.59 0.20 -10.96 16 13 C 0.15 6.81 6.25 38.13 0.24 7.05 16 14 N -0.65 -24.27 5.32 -306.86 -1.63 -25.90 16 15 C 0.58 20.57 7.53 86.58 0.65 21.22 16 16 O -0.54 -23.10 14.56 -4.14 -0.06 -23.16 16 17 C -0.25 -6.47 6.46 24.23 0.16 -6.31 16 18 C -0.06 -1.43 9.88 21.55 0.21 -1.21 16 19 C -0.07 -1.29 9.88 21.55 0.21 -1.08 16 20 C -0.25 -4.65 6.46 24.24 0.16 -4.49 16 21 C 0.60 11.29 8.07 86.59 0.70 11.99 16 22 N -0.83 -8.71 8.87 -176.08 -1.56 -10.27 16 23 O -0.56 -14.84 17.65 -4.12 -0.07 -14.91 16 24 S 0.25 4.53 21.41 -56.49 -1.21 3.32 16 25 C -0.20 -10.04 8.60 22.86 0.20 -9.85 16 26 H 0.29 12.45 8.30 -92.71 -0.77 11.68 16 27 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 28 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 29 H 0.10 4.78 6.47 -2.91 -0.02 4.76 16 30 H 0.41 12.85 7.93 -92.71 -0.74 12.12 16 31 H 0.16 3.57 8.04 -2.91 -0.02 3.54 16 32 H 0.17 2.91 8.04 -2.91 -0.02 2.89 16 33 H 0.41 2.65 7.93 -92.71 -0.74 1.91 16 34 H 0.42 2.97 8.93 -92.71 -0.83 2.15 16 35 H 0.12 5.90 6.17 -2.91 -0.02 5.88 16 Total: -1.00 -68.08 326.85 0.33 -67.75 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: -1.10 Total: 31.86 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: 3.70 Total: -27.61 kcal Atomic # 7 Polarization: -72.65 SS G_CDS: -2.96 Total: -75.60 kcal Atomic # 8 Polarization: -37.94 SS G_CDS: -0.13 Total: -38.07 kcal Atomic # 14 Polarization: 36.33 SS G_CDS: 2.03 Total: 38.36 kcal Atomic # 16 Polarization: 4.53 SS G_CDS: -1.21 Total: 3.32 kcal Total: -68.08 0.33 -67.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412119084.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.352 kcal (2) G-P(sol) polarization free energy of solvation -68.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds