Wall clock time and date at job start Tue Mar 31 2020 11:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46503 * 120.00294 * 2 1 4 4 C 1.50699 * 109.47498 * 275.00667 * 3 2 1 5 5 N 1.29026 * 124.91508 * 89.68911 * 4 3 2 6 6 C 1.31786 * 117.11895 * 179.81562 * 5 4 3 7 7 C 1.33635 * 114.50160 * 0.47418 * 6 5 4 8 8 S 1.70979 * 124.91246 * 269.99750 * 4 3 2 9 9 S 1.65601 * 119.99988 * 180.02562 * 2 1 3 10 10 O 1.42108 * 104.27558 * 153.92591 * 9 2 1 11 11 O 1.42101 * 104.27945 * 26.06803 * 9 2 1 12 12 C 1.81398 * 104.44844 * 269.99655 * 9 2 1 13 13 C 1.53000 * 109.47238 * 173.98351 * 12 9 2 14 14 C 1.50707 * 115.54678 * 65.20087 * 13 12 9 15 15 H 1.07998 * 119.99876 * 264.78509 * 14 13 12 16 16 C 1.37881 * 120.00087 * 84.78486 * 14 13 12 17 17 N 1.31511 * 119.99965 * 352.22325 * 16 14 13 18 18 Si 1.86797 * 120.00169 * 172.21928 * 16 14 13 19 19 H 1.48503 * 109.46608 * 60.00350 * 18 16 14 20 20 H 1.48495 * 109.47150 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47208 * 300.00504 * 18 16 14 22 22 C 1.52993 * 117.50322 * 279.53427 * 13 12 9 23 23 C 1.52991 * 117.50143 * 210.87210 * 13 12 9 24 24 H 1.09003 * 109.47494 * 269.99769 * 1 2 3 25 25 H 1.09001 * 109.47388 * 29.99194 * 1 2 3 26 26 H 1.08996 * 109.47468 * 149.99693 * 1 2 3 27 27 H 1.09003 * 109.46627 * 35.00127 * 3 2 1 28 28 H 1.09003 * 109.47254 * 154.99818 * 3 2 1 29 29 H 1.07997 * 122.74804 * 180.22818 * 6 5 4 30 30 H 1.08003 * 126.03819 * 179.72192 * 7 6 5 31 31 H 1.09003 * 109.47092 * 293.98634 * 12 9 2 32 32 H 1.09000 * 109.47351 * 53.98344 * 12 9 2 33 33 H 0.97000 * 120.00341 * 185.02623 * 17 16 14 34 34 H 1.09005 * 117.49497 * 359.97438 * 22 13 12 35 35 H 1.08993 * 117.50630 * 145.01731 * 22 13 12 36 36 H 1.09008 * 117.49858 * 214.98142 * 23 13 12 37 37 H 1.08998 * 117.50257 * 359.97354 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3413 1.7658 -1.4153 5 7 1.4962 2.5318 -2.0185 6 6 1.7774 2.8773 -3.2588 7 6 2.9184 2.3666 -3.7312 8 16 3.6443 1.3902 -2.4567 9 16 2.2929 -1.4342 -0.0006 10 8 3.5394 -1.1188 -0.6058 11 8 1.3969 -2.3559 -0.6062 12 6 2.5193 -1.8269 1.7558 13 6 3.1466 -3.2158 1.8911 14 6 4.5459 -3.3526 1.3486 15 1 4.7026 -3.7206 0.3454 16 6 5.6262 -3.0079 2.1330 17 7 5.4352 -2.4181 3.2928 18 14 7.3612 -3.3787 1.5484 19 1 7.6115 -2.6760 0.2643 20 1 8.3367 -2.9129 2.5664 21 1 7.5144 -4.8423 1.3498 22 6 2.2186 -4.4255 1.7647 23 6 2.7865 -4.0357 3.1316 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6501 2.0043 0.5895 28 1 3.1858 1.1177 0.4343 29 1 1.1362 3.5173 -3.8467 30 1 3.3238 2.5241 -4.7198 31 1 3.1755 -1.0857 2.2121 32 1 1.5522 -1.8144 2.2585 33 1 6.1949 -2.1100 3.8113 34 1 1.1609 -4.2319 1.5854 35 1 2.6201 -5.3205 1.2895 36 1 3.5617 -4.6745 3.5551 37 1 2.1031 -3.5856 3.8515 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413312871.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:34 Heat of formation + Delta-G solvation = 9.205442 kcal Electronic energy + Delta-G solvation = -22816.202698 eV Core-core repulsion = 19428.098357 eV Total energy + Delta-G solvation = -3388.104341 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.070 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.56195 -36.80000 -36.38883 -36.19945 -35.09586 -32.07011 -30.91414 -28.21181 -28.04458 -25.58123 -25.24926 -23.41856 -21.23993 -20.06534 -19.55904 -18.40365 -17.93005 -17.03900 -16.49880 -15.96891 -15.62311 -15.08218 -14.74616 -14.51063 -14.11498 -13.94475 -13.69034 -13.61142 -13.19889 -12.78957 -12.47705 -12.01188 -11.96441 -11.84957 -11.34222 -11.23612 -11.15186 -11.10819 -10.98386 -10.92912 -10.63006 -10.48791 -10.15282 -9.78784 -9.63969 -9.30498 -9.04451 -8.97745 -8.79035 -8.58874 -8.10992 -6.16443 -4.27202 0.68439 1.01533 1.52384 1.95593 2.82411 3.30781 3.32723 3.33891 3.39329 4.15670 4.35044 4.54822 4.81705 4.82973 5.10577 5.11366 5.17103 5.20328 5.38149 5.49832 5.55124 5.66714 5.69554 5.89146 5.96360 6.08752 6.17985 6.23694 6.34683 6.57905 6.67104 6.70217 6.96258 7.20912 7.36423 7.77646 7.77867 8.17512 8.78244 9.44066 10.91217 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.016600 B = 0.005333 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.346207 B = 5249.279191 C = 6310.836077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.007 6.007 3 C 0.202 3.798 4 C 0.018 3.982 5 N -0.471 5.471 6 C 0.030 3.970 7 C -0.284 4.284 8 S 0.199 5.801 9 S 2.598 3.402 10 O -0.941 6.941 11 O -0.967 6.967 12 C -0.550 4.550 13 C 0.042 3.958 14 C -0.516 4.516 15 H 0.068 0.932 16 C 0.083 3.917 17 N -0.875 5.875 18 Si 0.890 3.110 19 H -0.269 1.269 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.208 4.208 23 C -0.141 4.141 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.171 0.829 30 H 0.173 0.827 31 H 0.134 0.866 32 H 0.098 0.902 33 H 0.264 0.736 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.953 9.726 -6.313 13.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.842 5.842 3 C 0.073 3.927 4 C -0.261 4.261 5 N -0.187 5.187 6 C -0.123 4.123 7 C -0.425 4.425 8 S 0.453 5.547 9 S 2.696 3.304 10 O -0.931 6.931 11 O -0.957 6.957 12 C -0.684 4.684 13 C 0.040 3.960 14 C -0.553 4.553 15 H 0.086 0.914 16 C -0.122 4.122 17 N -0.510 5.510 18 Si 0.716 3.284 19 H -0.194 1.194 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.246 4.246 23 C -0.180 4.180 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.100 0.900 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.188 0.812 30 H 0.191 0.809 31 H 0.152 0.848 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.180 8.875 -6.511 12.623 hybrid contribution 0.203 0.734 -0.134 0.773 sum -5.978 9.609 -6.645 13.123 Atomic orbital electron populations 1.21556 0.78767 1.04223 1.01700 1.57961 1.15365 1.20786 1.90120 1.19671 0.98606 0.86586 0.87885 1.27708 0.95249 1.00054 1.03041 1.66285 1.29828 1.13657 1.08944 1.21723 0.96686 1.02460 0.91427 1.27375 1.02419 1.06696 1.05978 1.84946 1.23809 1.42413 1.03528 1.05619 0.73444 0.72222 0.79120 1.93532 1.43005 1.82092 1.74516 1.93486 1.65310 1.61771 1.75156 1.29998 1.07292 1.09683 1.21395 1.18294 0.93708 0.83438 1.00562 1.20472 0.87928 1.46410 1.00463 0.91376 1.24938 0.99268 0.93769 0.94199 1.69963 1.31360 1.37215 1.12491 0.86671 0.83519 0.79216 0.78971 1.19393 1.21127 1.19901 1.23199 0.97586 1.01294 1.02497 1.22557 1.01447 1.04102 0.89884 0.92807 0.90628 0.90018 0.87627 0.87477 0.81238 0.80921 0.84757 0.88325 0.92637 0.90706 0.89504 0.89546 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.08 10.66 59.84 0.64 1.72 16 2 N -1.01 -15.57 3.10 -123.06 -0.38 -15.95 16 3 C 0.20 2.82 5.81 -5.19 -0.03 2.79 16 4 C 0.02 0.27 6.97 -13.46 -0.09 0.18 16 5 N -0.47 -6.81 10.54 -11.86 -0.13 -6.94 16 6 C 0.03 0.37 11.35 -19.18 -0.22 0.15 16 7 C -0.28 -3.39 11.37 29.12 0.33 -3.05 16 8 S 0.20 2.95 22.15 -107.50 -2.38 0.57 16 9 S 2.60 51.28 5.11 -107.50 -0.55 50.73 16 10 O -0.94 -20.70 15.60 -57.54 -0.90 -21.59 16 11 O -0.97 -21.00 16.57 -57.54 -0.95 -21.95 16 12 C -0.55 -11.20 6.03 37.16 0.22 -10.98 16 13 C 0.04 1.01 1.32 -155.66 -0.21 0.80 16 14 C -0.52 -13.71 8.18 -34.44 -0.28 -13.99 16 15 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 16 C 0.08 2.21 5.38 -17.82 -0.10 2.12 16 17 N -0.87 -23.45 12.98 55.43 0.72 -22.73 16 18 Si 0.89 20.84 29.55 -169.99 -5.02 15.82 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 C -0.21 -4.51 9.96 -26.70 -0.27 -4.78 16 23 C -0.14 -3.15 9.49 -26.70 -0.25 -3.40 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 26 H 0.08 1.13 6.91 -51.93 -0.36 0.78 16 27 H 0.11 1.18 8.11 -51.93 -0.42 0.76 16 28 H 0.11 1.45 7.61 -51.93 -0.40 1.06 16 29 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.17 1.52 8.06 -52.48 -0.42 1.09 16 31 H 0.13 2.80 8.14 -51.92 -0.42 2.38 16 32 H 0.10 1.71 8.09 -51.92 -0.42 1.28 16 33 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 34 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 35 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 36 H 0.09 2.04 8.14 -51.92 -0.42 1.62 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 343.34 15.07 5.17 5.17 Total: -1.00 -31.70 343.34 -9.61 -41.31 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -4.94 Total: 4.01 kcal Atomic # 6 Polarization: -28.20 SS G_CDS: -0.25 Total: -28.45 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.21 Total: -45.62 kcal Atomic # 8 Polarization: -41.69 SS G_CDS: -1.85 Total: -43.54 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 54.23 SS G_CDS: -2.93 Total: 51.30 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.70 -9.61 -41.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413312871.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.519 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds