Wall clock time and date at job start Tue Mar 31 2020 11:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46503 * 120.00294 * 2 1 4 4 C 1.50699 * 109.47498 * 275.00667 * 3 2 1 5 5 N 1.29026 * 124.91508 * 89.68911 * 4 3 2 6 6 C 1.31786 * 117.11895 * 179.81562 * 5 4 3 7 7 C 1.33635 * 114.50160 * 0.47418 * 6 5 4 8 8 S 1.70979 * 124.91246 * 269.99750 * 4 3 2 9 9 S 1.65601 * 119.99988 * 180.02562 * 2 1 3 10 10 O 1.42108 * 104.27558 * 153.92591 * 9 2 1 11 11 O 1.42101 * 104.27945 * 26.06803 * 9 2 1 12 12 C 1.81398 * 104.44844 * 269.99655 * 9 2 1 13 13 C 1.53000 * 109.47238 * 173.98351 * 12 9 2 14 14 C 1.50707 * 115.54678 * 65.20087 * 13 12 9 15 15 H 1.07998 * 119.99876 * 264.78509 * 14 13 12 16 16 C 1.37881 * 120.00087 * 84.78486 * 14 13 12 17 17 N 1.31511 * 119.99965 * 352.22325 * 16 14 13 18 18 Si 1.86797 * 120.00169 * 172.21928 * 16 14 13 19 19 H 1.48503 * 109.46608 * 60.00350 * 18 16 14 20 20 H 1.48495 * 109.47150 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47208 * 300.00504 * 18 16 14 22 22 C 1.52993 * 117.50322 * 279.53427 * 13 12 9 23 23 C 1.52991 * 117.50143 * 210.87210 * 13 12 9 24 24 H 1.09003 * 109.47494 * 269.99769 * 1 2 3 25 25 H 1.09001 * 109.47388 * 29.99194 * 1 2 3 26 26 H 1.08996 * 109.47468 * 149.99693 * 1 2 3 27 27 H 1.09003 * 109.46627 * 35.00127 * 3 2 1 28 28 H 1.09003 * 109.47254 * 154.99818 * 3 2 1 29 29 H 1.07997 * 122.74804 * 180.22818 * 6 5 4 30 30 H 1.08003 * 126.03819 * 179.72192 * 7 6 5 31 31 H 1.09003 * 109.47092 * 293.98634 * 12 9 2 32 32 H 1.09000 * 109.47351 * 53.98344 * 12 9 2 33 33 H 0.97000 * 120.00341 * 185.02623 * 17 16 14 34 34 H 1.09005 * 117.49497 * 359.97438 * 22 13 12 35 35 H 1.08993 * 117.50630 * 145.01731 * 22 13 12 36 36 H 1.09008 * 117.49858 * 214.98142 * 23 13 12 37 37 H 1.08998 * 117.50257 * 359.97354 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3413 1.7658 -1.4153 5 7 1.4962 2.5318 -2.0185 6 6 1.7774 2.8773 -3.2588 7 6 2.9184 2.3666 -3.7312 8 16 3.6443 1.3902 -2.4567 9 16 2.2929 -1.4342 -0.0006 10 8 3.5394 -1.1188 -0.6058 11 8 1.3969 -2.3559 -0.6062 12 6 2.5193 -1.8269 1.7558 13 6 3.1466 -3.2158 1.8911 14 6 4.5459 -3.3526 1.3486 15 1 4.7026 -3.7206 0.3454 16 6 5.6262 -3.0079 2.1330 17 7 5.4352 -2.4181 3.2928 18 14 7.3612 -3.3787 1.5484 19 1 7.6115 -2.6760 0.2643 20 1 8.3367 -2.9129 2.5664 21 1 7.5144 -4.8423 1.3498 22 6 2.2186 -4.4255 1.7647 23 6 2.7865 -4.0357 3.1316 24 1 -0.3634 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6501 2.0043 0.5895 28 1 3.1858 1.1177 0.4343 29 1 1.1362 3.5173 -3.8467 30 1 3.3238 2.5241 -4.7198 31 1 3.1755 -1.0857 2.2121 32 1 1.5522 -1.8144 2.2585 33 1 6.1949 -2.1100 3.8113 34 1 1.1609 -4.2319 1.5854 35 1 2.6201 -5.3205 1.2895 36 1 3.5617 -4.6745 3.5551 37 1 2.1031 -3.5856 3.8515 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413312871.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:33 Heat of formation + Delta-G solvation = -12.055706 kcal Electronic energy + Delta-G solvation = -22817.124651 eV Core-core repulsion = 19428.098357 eV Total energy + Delta-G solvation = -3389.026294 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.070 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.59093 -38.56459 -38.00507 -37.38851 -36.69069 -34.06572 -31.95773 -29.84970 -29.07804 -27.49484 -26.41946 -24.51149 -22.98634 -21.42019 -21.04441 -19.80815 -19.07687 -18.42577 -18.30091 -17.28910 -16.95369 -16.62464 -16.39430 -15.91169 -15.63947 -15.22737 -14.92050 -14.82919 -14.66339 -13.89510 -13.74834 -13.65663 -13.60890 -13.23874 -13.09618 -12.89100 -12.82906 -12.53170 -12.43735 -12.42270 -12.25491 -12.15846 -11.88942 -11.54486 -10.87286 -10.77352 -10.53516 -10.35625 -10.25264 -9.94502 -9.75549 -8.17223 -6.31577 -0.63360 -0.22638 0.47539 0.92871 1.41773 1.42759 1.50083 1.73694 2.05767 2.41517 2.96990 3.09335 3.18392 3.34600 3.41379 3.67701 4.00443 4.14535 4.25823 4.37068 4.42456 4.52058 4.53348 4.58972 4.60341 4.73346 4.84834 4.95319 4.98023 5.02278 5.21776 5.24708 5.45663 5.54263 5.59131 5.73708 6.24319 6.72933 6.74168 7.40641 8.89748 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.016600 B = 0.005333 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.346207 B = 5249.279191 C = 6310.836077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -1.000 6.000 3 C 0.196 3.804 4 C 0.008 3.992 5 N -0.476 5.476 6 C 0.018 3.982 7 C -0.262 4.262 8 S 0.133 5.867 9 S 2.612 3.388 10 O -0.971 6.971 11 O -0.991 6.991 12 C -0.549 4.549 13 C 0.011 3.989 14 C -0.532 4.532 15 H 0.049 0.951 16 C 0.047 3.953 17 N -0.892 5.892 18 Si 0.932 3.068 19 H -0.275 1.275 20 H -0.275 1.275 21 H -0.271 1.271 22 C -0.198 4.198 23 C -0.139 4.139 24 H 0.083 0.917 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.138 0.862 28 H 0.104 0.896 29 H 0.204 0.796 30 H 0.205 0.795 31 H 0.126 0.874 32 H 0.131 0.869 33 H 0.266 0.734 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.343 11.101 -6.599 15.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.837 5.837 3 C 0.067 3.933 4 C -0.270 4.270 5 N -0.192 5.192 6 C -0.133 4.133 7 C -0.401 4.401 8 S 0.386 5.614 9 S 2.710 3.290 10 O -0.961 6.961 11 O -0.981 6.981 12 C -0.682 4.682 13 C 0.009 3.991 14 C -0.569 4.569 15 H 0.067 0.933 16 C -0.157 4.157 17 N -0.528 5.528 18 Si 0.757 3.243 19 H -0.200 1.200 20 H -0.200 1.200 21 H -0.196 1.196 22 C -0.236 4.236 23 C -0.178 4.178 24 H 0.102 0.898 25 H 0.106 0.894 26 H 0.089 0.911 27 H 0.155 0.845 28 H 0.122 0.878 29 H 0.221 0.779 30 H 0.222 0.778 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.075 0.925 34 H 0.116 0.884 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.578 10.242 -6.796 14.440 hybrid contribution 0.565 0.372 -0.128 0.689 sum -7.013 10.614 -6.924 14.484 Atomic orbital electron populations 1.21790 0.76937 1.04277 1.03750 1.57574 1.16327 1.19909 1.89911 1.19918 0.98942 0.86330 0.88135 1.27789 0.95167 1.00741 1.03335 1.66311 1.29631 1.13373 1.09899 1.22290 0.97264 1.02714 0.90998 1.27667 1.01613 1.04703 1.06130 1.85193 1.25685 1.44457 1.06095 1.04924 0.72832 0.72709 0.78560 1.93495 1.44804 1.82752 1.75050 1.93447 1.65715 1.63398 1.75557 1.29888 1.08475 1.07352 1.22441 1.18436 0.93292 0.85677 1.01718 1.20631 0.90060 1.46417 0.99813 0.93309 1.25461 1.01814 0.93859 0.94522 1.70006 1.32017 1.37782 1.12969 0.86013 0.80720 0.79064 0.78503 1.19984 1.19992 1.19577 1.23240 0.98438 1.00209 1.01665 1.22519 1.01350 1.03637 0.90267 0.89800 0.89369 0.91141 0.84471 0.87828 0.77905 0.77758 0.85575 0.85114 0.92507 0.88409 0.90034 0.91548 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.80 10.66 127.77 1.36 3.17 16 2 N -1.00 -29.39 3.10 -543.24 -1.68 -31.08 16 3 C 0.20 5.19 5.81 85.63 0.50 5.69 16 4 C 0.01 0.24 6.97 88.52 0.62 0.86 16 5 N -0.48 -12.74 10.54 -191.45 -2.02 -14.76 16 6 C 0.02 0.40 11.35 83.65 0.95 1.35 16 7 C -0.26 -5.67 11.37 66.78 0.76 -4.91 16 8 S 0.13 3.92 22.15 -56.49 -1.25 2.67 16 9 S 2.61 102.10 5.11 -56.49 -0.29 101.82 16 10 O -0.97 -43.55 15.60 -127.65 -1.99 -45.54 16 11 O -0.99 -42.60 16.57 -127.65 -2.12 -44.71 16 12 C -0.55 -21.81 6.03 71.98 0.43 -21.38 16 13 C 0.01 0.52 1.32 -52.93 -0.07 0.45 16 14 C -0.53 -28.75 8.18 25.60 0.21 -28.54 16 15 H 0.05 2.75 7.83 -2.91 -0.02 2.72 16 16 C 0.05 2.49 5.38 84.66 0.46 2.95 16 17 N -0.89 -47.95 12.98 21.45 0.28 -47.67 16 18 Si 0.93 43.07 29.55 68.60 2.03 45.10 16 19 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 C -0.20 -8.41 9.96 30.61 0.30 -8.10 16 23 C -0.14 -6.10 9.49 30.61 0.29 -5.81 16 24 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 25 H 0.09 1.87 8.07 -2.39 -0.02 1.85 16 26 H 0.07 1.83 6.91 -2.39 -0.02 1.81 16 27 H 0.14 2.71 8.11 -2.39 -0.02 2.70 16 28 H 0.10 2.80 7.61 -2.39 -0.02 2.78 16 29 H 0.20 2.95 8.06 -2.91 -0.02 2.93 16 30 H 0.21 2.95 8.06 -2.91 -0.02 2.93 16 31 H 0.13 5.22 8.14 -2.39 -0.02 5.20 16 32 H 0.13 4.20 8.09 -2.39 -0.02 4.19 16 33 H 0.27 13.63 8.32 -92.71 -0.77 12.86 16 34 H 0.10 3.66 8.14 -2.38 -0.02 3.64 16 35 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 36 H 0.07 3.15 8.14 -2.38 -0.02 3.13 16 37 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -68.33 343.34 -0.16 -68.49 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 1.07 Total: 19.96 kcal Atomic # 6 Polarization: -60.08 SS G_CDS: 5.81 Total: -54.28 kcal Atomic # 7 Polarization: -90.09 SS G_CDS: -3.42 Total: -93.51 kcal Atomic # 8 Polarization: -86.14 SS G_CDS: -4.11 Total: -90.25 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: 106.02 SS G_CDS: -1.54 Total: 104.48 kcal Total: -68.33 -0.16 -68.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413312871.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.436 kcal (2) G-P(sol) polarization free energy of solvation -68.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds