Wall clock time and date at job start Tue Mar 31 2020 10:39:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30826 * 1
3 3 Si 1.86798 * 119.99991 * 2 1
4 4 H 1.48501 * 109.46985 * 180.02562 * 3 2 1
5 5 H 1.48499 * 109.46979 * 299.99486 * 3 2 1
6 6 H 1.48493 * 109.47272 * 60.00166 * 3 2 1
7 7 C 1.39948 * 120.00023 * 179.97438 * 2 1 3
8 8 H 1.07998 * 119.99845 * 162.60181 * 7 2 1
9 9 C 1.41440 * 119.99740 * 342.60777 * 7 2 1
10 10 C 1.40791 * 120.17083 * 154.90549 * 9 7 2
11 11 C 1.37718 * 120.04910 * 180.02562 * 10 9 7
12 12 C 1.38359 * 120.41594 * 359.76179 * 11 10 9
13 13 C 1.39925 * 120.35724 * 0.51603 * 12 11 10
14 14 C 1.47762 * 120.03680 * 179.73722 * 13 12 11
15 15 O 1.21460 * 120.00607 * 179.72856 * 14 13 12
16 16 O 1.34712 * 119.99637 * 359.45414 * 14 13 12
17 17 C 1.45203 * 117.00051 * 179.97438 * 16 14 13
18 18 C 1.50694 * 109.47037 * 180.02562 * 17 16 14
19 19 C 1.35172 * 125.61171 * 90.00335 * 18 17 16
20 20 C 1.40306 * 107.12906 * 179.97438 * 19 18 17
21 21 C 1.36636 * 106.70349 * 359.97438 * 20 19 18
22 22 C 1.46471 * 126.00005 * 180.02562 * 21 20 19
23 23 O 1.21619 * 119.99436 * 359.97438 * 22 21 20
24 24 O 1.34893 * 120.00259 * 179.97438 * 22 21 20
25 25 O 1.33916 * 125.60969 * 269.69300 * 18 17 16
26 26 C 1.39091 * 119.93597 * 359.46915 * 13 12 11
27 27 H 0.96999 * 119.99833 * 359.97438 * 1 2 3
28 28 H 1.07999 * 119.97303 * 0.02562 * 10 9 7
29 29 H 1.07997 * 119.78864 * 180.02562 * 11 10 9
30 30 H 1.08007 * 119.82180 * 180.28293 * 12 11 10
31 31 H 1.09001 * 109.47034 * 300.00173 * 17 16 14
32 32 H 1.09004 * 109.47042 * 59.99797 * 17 16 14
33 33 H 1.08003 * 126.43044 * 359.97296 * 19 18 17
34 34 H 1.07999 * 126.64439 * 180.02562 * 20 19 18
35 35 H 0.96701 * 116.99645 * 179.97438 * 24 22 21
36 36 H 1.07997 * 120.20453 * 180.25305 * 26 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3083 0.0000 0.0000
3 14 2.2422 1.6177 0.0000
4 1 3.7022 1.3463 -0.0006
5 1 1.8836 2.3963 -1.2126
6 1 1.8836 2.3964 1.2125
7 6 2.0080 -1.2120 0.0005
8 1 3.0509 -1.2335 -0.2791
9 6 1.3492 -2.4087 0.3672
10 6 1.8188 -3.6486 -0.1064
11 6 1.1752 -4.8122 0.2518
12 6 0.0684 -4.7738 1.0812
13 6 -0.4164 -3.5505 1.5571
14 6 -1.6025 -3.5172 2.4378
15 8 -2.0199 -2.4555 2.8547
16 8 -2.2241 -4.6641 2.7740
17 6 -3.3824 -4.5559 3.6429
18 6 -3.9411 -5.9300 3.9087
19 6 -3.5816 -6.7423 4.9275
20 6 -4.3390 -7.9171 4.8063
21 6 -5.1333 -7.7605 3.7057
22 6 -6.0954 -8.7383 3.1921
23 8 -6.2401 -9.8045 3.7590
24 8 -6.8208 -8.4562 2.0903
25 8 -4.8797 -6.5449 3.1777
26 6 0.2225 -2.3663 1.2050
27 1 -0.4850 0.8401 0.0004
28 1 2.6844 -3.6872 -0.7511
29 1 1.5392 -5.7611 -0.1136
30 1 -0.4263 -5.6926 1.3597
31 1 -3.0875 -4.0953 4.5858
32 1 -4.1424 -3.9412 3.1604
33 1 -2.8489 -6.5273 5.6913
34 1 -4.3019 -8.7780 5.4574
35 1 -7.4425 -9.1328 1.7890
36 1 -0.1456 -1.4201 1.5732
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001601077671.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:39:36
Heat of formation + Delta-G solvation = -138.720800 kcal
Electronic energy + Delta-G solvation = -24335.626841 eV
Core-core repulsion = 20330.618363 eV
Total energy + Delta-G solvation = -4005.008478 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 316.087 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-43.10174 -40.28450 -39.91159 -37.48869 -36.56522 -36.01278 -33.82029 -33.54394
-31.77975 -30.35075 -29.57815 -27.60829 -25.42973 -24.00839 -22.99784 -21.97421
-21.06841 -20.84678 -19.98617 -18.85534 -18.03405 -17.93623 -17.05127 -16.61117
-16.30842 -16.05456 -15.46157 -15.42203 -14.88167 -14.58747 -14.09031 -13.64224
-13.54372 -13.43486 -13.34812 -13.10908 -12.73255 -12.57239 -12.16480 -12.02463
-11.74770 -11.37473 -11.26741 -11.16617 -10.82904 -10.58144 -10.54467 -10.42986
-10.31734 -9.79112 -9.67136 -9.30649 -9.05276 -7.82685 -7.62107 -6.88550
-4.49763 0.39307 1.71593 1.85881 2.02194 2.52247 2.71430 2.76922
3.03590 3.06831 3.09250 3.29694 3.47852 3.86095 4.25432 4.49093
4.51055 4.73194 4.99006 5.05260 5.18694 5.36062 5.46967 5.51615
5.57088 5.91207 5.95352 6.06063 6.33222 6.50397 6.52723 6.75528
6.86630 6.89507 7.10581 7.23438 7.41479 7.60301 7.67495 7.84036
8.03092 8.36099 8.38701 8.70279 8.72683 10.06938
Molecular weight = 316.09amu
Principal moments of inertia in cm(-1)
A = 0.025504 B = 0.002486 C = 0.002405
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1097.623264 B =11258.641798 C =11638.013733
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.787 5.787
2 C 0.073 3.927
3 Si 0.911 3.089
4 H -0.259 1.259
5 H -0.273 1.273
6 H -0.270 1.270
7 C -0.459 4.459
8 H 0.083 0.917
9 C 0.095 3.905
10 C -0.199 4.199
11 C -0.103 4.103
12 C -0.193 4.193
13 C -0.115 4.115
14 C 0.517 3.483
15 O -0.513 6.513
16 O -0.350 6.350
17 C 0.138 3.862
18 C 0.040 3.960
19 C -0.195 4.195
20 C -0.100 4.100
21 C -0.066 4.066
22 C 0.575 3.425
23 O -0.496 6.496
24 O -0.502 6.502
25 O -0.140 6.140
26 C -0.088 4.088
27 H 0.285 0.715
28 H 0.099 0.901
29 H 0.097 0.903
30 H 0.103 0.897
31 H 0.109 0.891
32 H 0.092 0.908
33 H 0.167 0.833
34 H 0.169 0.831
35 H 0.420 0.580
36 H 0.136 0.864
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.025 -10.733 7.016 15.680
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.411 5.411
2 C -0.146 4.146
3 Si 0.735 3.265
4 H -0.183 1.183
5 H -0.199 1.199
6 H -0.195 1.195
7 C -0.488 4.488
8 H 0.102 0.898
9 C 0.093 3.907
10 C -0.219 4.219
11 C -0.121 4.121
12 C -0.213 4.213
13 C -0.116 4.116
14 C 0.364 3.636
15 O -0.402 6.402
16 O -0.268 6.268
17 C 0.064 3.936
18 C -0.013 4.013
19 C -0.215 4.215
20 C -0.120 4.120
21 C -0.116 4.116
22 C 0.420 3.580
23 O -0.386 6.386
24 O -0.313 6.313
25 O -0.035 6.035
26 C -0.107 4.107
27 H 0.096 0.904
28 H 0.117 0.883
29 H 0.115 0.885
30 H 0.121 0.879
31 H 0.127 0.873
32 H 0.111 0.889
33 H 0.185 0.815
34 H 0.186 0.814
35 H 0.279 0.721
36 H 0.154 0.846
Dipole moment (debyes) X Y Z Total
from point charges -9.311 -10.126 7.151 15.504
hybrid contribution -0.222 0.259 -0.099 0.355
sum -9.533 -9.867 7.052 15.426
Atomic orbital electron populations
1.69778 1.07614 1.29781 1.33964 1.25975 0.94794 1.01644 0.92209
0.86208 0.80887 0.80670 0.78719 1.18290 1.19880 1.19541 1.19607
0.98147 0.90841 1.40176 0.89847 1.17549 0.91129 0.92659 0.89402
1.21210 1.03119 0.92748 1.04800 1.20518 0.96131 0.96982 0.98496
1.20570 1.00271 0.95293 1.05156 1.18779 0.94745 0.96018 1.02089
1.21940 0.82945 0.80422 0.78286 1.90784 1.65219 1.31103 1.53110
1.86683 1.40878 1.36969 1.62319 1.21098 0.87765 0.88185 0.96516
1.22426 0.91197 0.95835 0.91882 1.21734 1.04028 0.93563 1.02129
1.22017 0.94332 0.99702 0.95911 1.20639 1.04970 0.86498 0.99539
1.18809 0.77738 0.83628 0.77874 1.91008 1.65478 1.23415 1.58712
1.84696 1.52802 1.51046 1.42805 1.84127 1.46845 1.25150 1.47425
1.21655 0.96455 0.95888 0.96713 0.90417 0.88251 0.88460 0.87876
0.87287 0.88949 0.81519 0.81384 0.72108 0.84620
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.79 -20.09 10.97 55.55 0.61 -19.48 16
2 C 0.07 1.77 5.14 -17.34 -0.09 1.68 16
3 Si 0.91 18.13 29.59 -169.99 -5.03 13.10 16
4 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16
5 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16
6 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16
7 C -0.46 -11.62 9.05 -37.72 -0.34 -11.96 16
8 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16
9 C 0.10 2.43 5.57 -106.87 -0.59 1.83 16
10 C -0.20 -4.57 9.78 -38.81 -0.38 -4.95 16
11 C -0.10 -2.17 10.01 -39.73 -0.40 -2.56 16
12 C -0.19 -4.14 9.62 -38.91 -0.37 -4.51 16
13 C -0.11 -2.67 5.87 -105.06 -0.62 -3.29 16
14 C 0.52 10.94 7.90 34.62 0.27 11.22 16
15 O -0.51 -11.68 16.12 -19.23 -0.31 -11.99 16
16 O -0.35 -6.20 9.44 -40.53 -0.38 -6.58 16
17 C 0.14 1.87 6.00 36.00 0.22 2.09 16
18 C 0.04 0.49 6.95 -35.40 -0.25 0.25 16
19 C -0.20 -2.03 10.77 -39.90 -0.43 -2.46 16
20 C -0.10 -1.03 10.62 -39.38 -0.42 -1.45 16
21 C -0.07 -0.79 7.18 -36.85 -0.26 -1.05 16
22 C 0.58 6.31 8.30 34.05 0.28 6.59 16
23 O -0.50 -6.16 17.65 -19.36 -0.34 -6.50 16
24 O -0.50 -4.36 13.44 -42.47 -0.57 -4.93 16
25 O -0.14 -1.89 10.67 4.72 0.05 -1.84 16
26 C -0.09 -2.25 8.23 -38.42 -0.32 -2.56 16
27 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16
28 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16
29 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16
30 H 0.10 2.00 7.59 -52.48 -0.40 1.60 16
31 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16
32 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16
33 H 0.17 1.32 8.06 -52.48 -0.42 0.90 16
34 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16
35 H 0.42 1.34 9.11 45.56 0.42 1.76 16
36 H 0.14 3.70 5.76 -52.49 -0.30 3.40 16
LS Contribution 337.38 15.07 5.08 5.08
Total: -1.00 -30.78 337.38 -6.96 -37.74
By element:
Atomic # 1 Polarization: 8.90 SS G_CDS: -2.37 Total: 6.53 kcal
Atomic # 6 Polarization: -7.44 SS G_CDS: -3.70 Total: -11.14 kcal
Atomic # 7 Polarization: -20.09 SS G_CDS: 0.61 Total: -19.48 kcal
Atomic # 8 Polarization: -30.28 SS G_CDS: -1.55 Total: -31.83 kcal
Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal
Total LS contribution 5.08 Total: 5.08 kcal
Total: -30.78 -6.96 -37.74 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001601077671.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -100.979 kcal
(2) G-P(sol) polarization free energy of solvation -30.783 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.761 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.742 kcal
(6) G-S(sol) free energy of system = (1) + (5) -138.721 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds