Wall clock time and date at job start Tue Mar 31 2020 10:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86798 * 119.99991 * 2 1 4 4 H 1.48501 * 109.46985 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46979 * 299.99486 * 3 2 1 6 6 H 1.48493 * 109.47272 * 60.00166 * 3 2 1 7 7 C 1.39948 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99845 * 162.60181 * 7 2 1 9 9 C 1.41440 * 119.99740 * 342.60777 * 7 2 1 10 10 C 1.40791 * 120.17083 * 154.90549 * 9 7 2 11 11 C 1.37718 * 120.04910 * 180.02562 * 10 9 7 12 12 C 1.38359 * 120.41594 * 359.76179 * 11 10 9 13 13 C 1.39925 * 120.35724 * 0.51603 * 12 11 10 14 14 C 1.47762 * 120.03680 * 179.73722 * 13 12 11 15 15 O 1.21460 * 120.00607 * 179.72856 * 14 13 12 16 16 O 1.34712 * 119.99637 * 359.45414 * 14 13 12 17 17 C 1.45203 * 117.00051 * 179.97438 * 16 14 13 18 18 C 1.50694 * 109.47037 * 180.02562 * 17 16 14 19 19 C 1.35172 * 125.61171 * 90.00335 * 18 17 16 20 20 C 1.40306 * 107.12906 * 179.97438 * 19 18 17 21 21 C 1.36636 * 106.70349 * 359.97438 * 20 19 18 22 22 C 1.46471 * 126.00005 * 180.02562 * 21 20 19 23 23 O 1.21619 * 119.99436 * 359.97438 * 22 21 20 24 24 O 1.34893 * 120.00259 * 179.97438 * 22 21 20 25 25 O 1.33916 * 125.60969 * 269.69300 * 18 17 16 26 26 C 1.39091 * 119.93597 * 359.46915 * 13 12 11 27 27 H 0.96999 * 119.99833 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.97303 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.78864 * 180.02562 * 11 10 9 30 30 H 1.08007 * 119.82180 * 180.28293 * 12 11 10 31 31 H 1.09001 * 109.47034 * 300.00173 * 17 16 14 32 32 H 1.09004 * 109.47042 * 59.99797 * 17 16 14 33 33 H 1.08003 * 126.43044 * 359.97296 * 19 18 17 34 34 H 1.07999 * 126.64439 * 180.02562 * 20 19 18 35 35 H 0.96701 * 116.99645 * 179.97438 * 24 22 21 36 36 H 1.07997 * 120.20453 * 180.25305 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3463 -0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8836 2.3964 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0509 -1.2335 -0.2791 9 6 1.3492 -2.4087 0.3672 10 6 1.8188 -3.6486 -0.1064 11 6 1.1752 -4.8122 0.2518 12 6 0.0684 -4.7738 1.0812 13 6 -0.4164 -3.5505 1.5571 14 6 -1.6025 -3.5172 2.4378 15 8 -2.0199 -2.4555 2.8547 16 8 -2.2241 -4.6641 2.7740 17 6 -3.3824 -4.5559 3.6429 18 6 -3.9411 -5.9300 3.9087 19 6 -3.5816 -6.7423 4.9275 20 6 -4.3390 -7.9171 4.8063 21 6 -5.1333 -7.7605 3.7057 22 6 -6.0954 -8.7383 3.1921 23 8 -6.2401 -9.8045 3.7590 24 8 -6.8208 -8.4562 2.0903 25 8 -4.8797 -6.5449 3.1777 26 6 0.2225 -2.3663 1.2050 27 1 -0.4850 0.8401 0.0004 28 1 2.6844 -3.6872 -0.7511 29 1 1.5392 -5.7611 -0.1136 30 1 -0.4263 -5.6926 1.3597 31 1 -3.0875 -4.0953 4.5858 32 1 -4.1424 -3.9412 3.1604 33 1 -2.8489 -6.5273 5.6913 34 1 -4.3019 -8.7780 5.4574 35 1 -7.4425 -9.1328 1.7890 36 1 -0.1456 -1.4201 1.5732 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601077671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:36 Heat of formation + Delta-G solvation = -138.720800 kcal Electronic energy + Delta-G solvation = -24335.626841 eV Core-core repulsion = 20330.618363 eV Total energy + Delta-G solvation = -4005.008478 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.087 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.10174 -40.28450 -39.91159 -37.48869 -36.56522 -36.01278 -33.82029 -33.54394 -31.77975 -30.35075 -29.57815 -27.60829 -25.42973 -24.00839 -22.99784 -21.97421 -21.06841 -20.84678 -19.98617 -18.85534 -18.03405 -17.93623 -17.05127 -16.61117 -16.30842 -16.05456 -15.46157 -15.42203 -14.88167 -14.58747 -14.09031 -13.64224 -13.54372 -13.43486 -13.34812 -13.10908 -12.73255 -12.57239 -12.16480 -12.02463 -11.74770 -11.37473 -11.26741 -11.16617 -10.82904 -10.58144 -10.54467 -10.42986 -10.31734 -9.79112 -9.67136 -9.30649 -9.05276 -7.82685 -7.62107 -6.88550 -4.49763 0.39307 1.71593 1.85881 2.02194 2.52247 2.71430 2.76922 3.03590 3.06831 3.09250 3.29694 3.47852 3.86095 4.25432 4.49093 4.51055 4.73194 4.99006 5.05260 5.18694 5.36062 5.46967 5.51615 5.57088 5.91207 5.95352 6.06063 6.33222 6.50397 6.52723 6.75528 6.86630 6.89507 7.10581 7.23438 7.41479 7.60301 7.67495 7.84036 8.03092 8.36099 8.38701 8.70279 8.72683 10.06938 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.025504 B = 0.002486 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.623264 B =11258.641798 C =11638.013733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.459 4.459 8 H 0.083 0.917 9 C 0.095 3.905 10 C -0.199 4.199 11 C -0.103 4.103 12 C -0.193 4.193 13 C -0.115 4.115 14 C 0.517 3.483 15 O -0.513 6.513 16 O -0.350 6.350 17 C 0.138 3.862 18 C 0.040 3.960 19 C -0.195 4.195 20 C -0.100 4.100 21 C -0.066 4.066 22 C 0.575 3.425 23 O -0.496 6.496 24 O -0.502 6.502 25 O -0.140 6.140 26 C -0.088 4.088 27 H 0.285 0.715 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.167 0.833 34 H 0.169 0.831 35 H 0.420 0.580 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.025 -10.733 7.016 15.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.488 4.488 8 H 0.102 0.898 9 C 0.093 3.907 10 C -0.219 4.219 11 C -0.121 4.121 12 C -0.213 4.213 13 C -0.116 4.116 14 C 0.364 3.636 15 O -0.402 6.402 16 O -0.268 6.268 17 C 0.064 3.936 18 C -0.013 4.013 19 C -0.215 4.215 20 C -0.120 4.120 21 C -0.116 4.116 22 C 0.420 3.580 23 O -0.386 6.386 24 O -0.313 6.313 25 O -0.035 6.035 26 C -0.107 4.107 27 H 0.096 0.904 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.111 0.889 33 H 0.185 0.815 34 H 0.186 0.814 35 H 0.279 0.721 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.311 -10.126 7.151 15.504 hybrid contribution -0.222 0.259 -0.099 0.355 sum -9.533 -9.867 7.052 15.426 Atomic orbital electron populations 1.69778 1.07614 1.29781 1.33964 1.25975 0.94794 1.01644 0.92209 0.86208 0.80887 0.80670 0.78719 1.18290 1.19880 1.19541 1.19607 0.98147 0.90841 1.40176 0.89847 1.17549 0.91129 0.92659 0.89402 1.21210 1.03119 0.92748 1.04800 1.20518 0.96131 0.96982 0.98496 1.20570 1.00271 0.95293 1.05156 1.18779 0.94745 0.96018 1.02089 1.21940 0.82945 0.80422 0.78286 1.90784 1.65219 1.31103 1.53110 1.86683 1.40878 1.36969 1.62319 1.21098 0.87765 0.88185 0.96516 1.22426 0.91197 0.95835 0.91882 1.21734 1.04028 0.93563 1.02129 1.22017 0.94332 0.99702 0.95911 1.20639 1.04970 0.86498 0.99539 1.18809 0.77738 0.83628 0.77874 1.91008 1.65478 1.23415 1.58712 1.84696 1.52802 1.51046 1.42805 1.84127 1.46845 1.25150 1.47425 1.21655 0.96455 0.95888 0.96713 0.90417 0.88251 0.88460 0.87876 0.87287 0.88949 0.81519 0.81384 0.72108 0.84620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.09 10.97 55.55 0.61 -19.48 16 2 C 0.07 1.77 5.14 -17.34 -0.09 1.68 16 3 Si 0.91 18.13 29.59 -169.99 -5.03 13.10 16 4 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 7 C -0.46 -11.62 9.05 -37.72 -0.34 -11.96 16 8 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 9 C 0.10 2.43 5.57 -106.87 -0.59 1.83 16 10 C -0.20 -4.57 9.78 -38.81 -0.38 -4.95 16 11 C -0.10 -2.17 10.01 -39.73 -0.40 -2.56 16 12 C -0.19 -4.14 9.62 -38.91 -0.37 -4.51 16 13 C -0.11 -2.67 5.87 -105.06 -0.62 -3.29 16 14 C 0.52 10.94 7.90 34.62 0.27 11.22 16 15 O -0.51 -11.68 16.12 -19.23 -0.31 -11.99 16 16 O -0.35 -6.20 9.44 -40.53 -0.38 -6.58 16 17 C 0.14 1.87 6.00 36.00 0.22 2.09 16 18 C 0.04 0.49 6.95 -35.40 -0.25 0.25 16 19 C -0.20 -2.03 10.77 -39.90 -0.43 -2.46 16 20 C -0.10 -1.03 10.62 -39.38 -0.42 -1.45 16 21 C -0.07 -0.79 7.18 -36.85 -0.26 -1.05 16 22 C 0.58 6.31 8.30 34.05 0.28 6.59 16 23 O -0.50 -6.16 17.65 -19.36 -0.34 -6.50 16 24 O -0.50 -4.36 13.44 -42.47 -0.57 -4.93 16 25 O -0.14 -1.89 10.67 4.72 0.05 -1.84 16 26 C -0.09 -2.25 8.23 -38.42 -0.32 -2.56 16 27 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 28 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 29 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 30 H 0.10 2.00 7.59 -52.48 -0.40 1.60 16 31 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.17 1.32 8.06 -52.48 -0.42 0.90 16 34 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.42 1.34 9.11 45.56 0.42 1.76 16 36 H 0.14 3.70 5.76 -52.49 -0.30 3.40 16 LS Contribution 337.38 15.07 5.08 5.08 Total: -1.00 -30.78 337.38 -6.96 -37.74 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -2.37 Total: 6.53 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -3.70 Total: -11.14 kcal Atomic # 7 Polarization: -20.09 SS G_CDS: 0.61 Total: -19.48 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -1.55 Total: -31.83 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.78 -6.96 -37.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.979 kcal (2) G-P(sol) polarization free energy of solvation -30.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds