Wall clock time and date at job start Tue Mar 31 2020 10:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86798 * 119.99991 * 2 1 4 4 H 1.48501 * 109.46985 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46979 * 299.99486 * 3 2 1 6 6 H 1.48493 * 109.47272 * 60.00166 * 3 2 1 7 7 C 1.39948 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99845 * 162.60181 * 7 2 1 9 9 C 1.41440 * 119.99740 * 342.60777 * 7 2 1 10 10 C 1.40791 * 120.17083 * 154.90549 * 9 7 2 11 11 C 1.37718 * 120.04910 * 180.02562 * 10 9 7 12 12 C 1.38359 * 120.41594 * 359.76179 * 11 10 9 13 13 C 1.39925 * 120.35724 * 0.51603 * 12 11 10 14 14 C 1.47762 * 120.03680 * 179.73722 * 13 12 11 15 15 O 1.21460 * 120.00607 * 179.72856 * 14 13 12 16 16 O 1.34712 * 119.99637 * 359.45414 * 14 13 12 17 17 C 1.45203 * 117.00051 * 179.97438 * 16 14 13 18 18 C 1.50694 * 109.47037 * 180.02562 * 17 16 14 19 19 C 1.35172 * 125.61171 * 90.00335 * 18 17 16 20 20 C 1.40306 * 107.12906 * 179.97438 * 19 18 17 21 21 C 1.36636 * 106.70349 * 359.97438 * 20 19 18 22 22 C 1.46471 * 126.00005 * 180.02562 * 21 20 19 23 23 O 1.21619 * 119.99436 * 359.97438 * 22 21 20 24 24 O 1.34893 * 120.00259 * 179.97438 * 22 21 20 25 25 O 1.33916 * 125.60969 * 269.69300 * 18 17 16 26 26 C 1.39091 * 119.93597 * 359.46915 * 13 12 11 27 27 H 0.96999 * 119.99833 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.97303 * 0.02562 * 10 9 7 29 29 H 1.07997 * 119.78864 * 180.02562 * 11 10 9 30 30 H 1.08007 * 119.82180 * 180.28293 * 12 11 10 31 31 H 1.09001 * 109.47034 * 300.00173 * 17 16 14 32 32 H 1.09004 * 109.47042 * 59.99797 * 17 16 14 33 33 H 1.08003 * 126.43044 * 359.97296 * 19 18 17 34 34 H 1.07999 * 126.64439 * 180.02562 * 20 19 18 35 35 H 0.96701 * 116.99645 * 179.97438 * 24 22 21 36 36 H 1.07997 * 120.20453 * 180.25305 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3463 -0.0006 5 1 1.8836 2.3963 -1.2126 6 1 1.8836 2.3964 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0509 -1.2335 -0.2791 9 6 1.3492 -2.4087 0.3672 10 6 1.8188 -3.6486 -0.1064 11 6 1.1752 -4.8122 0.2518 12 6 0.0684 -4.7738 1.0812 13 6 -0.4164 -3.5505 1.5571 14 6 -1.6025 -3.5172 2.4378 15 8 -2.0199 -2.4555 2.8547 16 8 -2.2241 -4.6641 2.7740 17 6 -3.3824 -4.5559 3.6429 18 6 -3.9411 -5.9300 3.9087 19 6 -3.5816 -6.7423 4.9275 20 6 -4.3390 -7.9171 4.8063 21 6 -5.1333 -7.7605 3.7057 22 6 -6.0954 -8.7383 3.1921 23 8 -6.2401 -9.8045 3.7590 24 8 -6.8208 -8.4562 2.0903 25 8 -4.8797 -6.5449 3.1777 26 6 0.2225 -2.3663 1.2050 27 1 -0.4850 0.8401 0.0004 28 1 2.6844 -3.6872 -0.7511 29 1 1.5392 -5.7611 -0.1136 30 1 -0.4263 -5.6926 1.3597 31 1 -3.0875 -4.0953 4.5858 32 1 -4.1424 -3.9412 3.1604 33 1 -2.8489 -6.5273 5.6913 34 1 -4.3019 -8.7780 5.4574 35 1 -7.4425 -9.1328 1.7890 36 1 -0.1456 -1.4201 1.5732 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601077671.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:35 Heat of formation + Delta-G solvation = -156.266055 kcal Electronic energy + Delta-G solvation = -24336.387660 eV Core-core repulsion = 20330.618363 eV Total energy + Delta-G solvation = -4005.769297 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 316.087 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.99289 -41.51924 -41.06829 -39.22223 -37.57439 -37.34192 -35.61956 -34.43199 -32.89109 -32.00350 -31.36354 -28.65999 -27.24691 -25.22932 -24.27459 -22.91614 -22.83426 -21.71681 -21.62374 -19.71653 -19.65623 -18.84101 -18.36025 -17.91954 -17.64110 -17.48053 -16.93299 -16.53016 -16.33332 -16.08120 -15.22141 -15.04410 -14.93179 -14.61747 -14.38896 -14.29610 -14.14886 -14.00632 -13.49999 -13.38776 -13.00237 -12.81156 -12.79971 -12.58007 -12.23986 -12.21522 -12.05649 -11.90475 -11.54504 -11.39068 -11.23946 -11.09753 -9.98938 -9.62606 -9.44443 -8.68422 -6.39546 -0.50434 0.10217 0.78612 0.96142 1.18747 1.39491 1.45444 1.55237 1.67663 1.76370 1.83267 2.15635 2.20189 2.72014 3.29362 3.62308 3.69591 3.83617 3.88504 4.13292 4.13917 4.37409 4.42263 4.49610 4.61907 4.75974 4.82326 5.04788 5.11640 5.13490 5.14740 5.27371 5.28177 5.44024 5.68021 5.80260 5.88762 6.01085 6.22606 6.52934 6.73529 6.76232 6.86457 6.88266 8.29383 Molecular weight = 316.09amu Principal moments of inertia in cm(-1) A = 0.025504 B = 0.002486 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.623264 B =11258.641798 C =11638.013733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.031 3.969 3 Si 0.983 3.017 4 H -0.252 1.252 5 H -0.266 1.266 6 H -0.269 1.269 7 C -0.492 4.492 8 H 0.087 0.913 9 C 0.066 3.934 10 C -0.202 4.202 11 C -0.099 4.099 12 C -0.181 4.181 13 C -0.128 4.128 14 C 0.523 3.477 15 O -0.537 6.537 16 O -0.347 6.347 17 C 0.135 3.865 18 C 0.015 3.985 19 C -0.177 4.177 20 C -0.093 4.093 21 C -0.083 4.083 22 C 0.581 3.419 23 O -0.514 6.514 24 O -0.502 6.502 25 O -0.161 6.161 26 C -0.120 4.120 27 H 0.288 0.712 28 H 0.115 0.885 29 H 0.139 0.861 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.091 0.909 33 H 0.194 0.806 34 H 0.192 0.808 35 H 0.441 0.559 36 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.730 -12.432 7.606 16.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.184 4.184 3 Si 0.804 3.196 4 H -0.175 1.175 5 H -0.191 1.191 6 H -0.194 1.194 7 C -0.521 4.521 8 H 0.105 0.895 9 C 0.063 3.937 10 C -0.222 4.222 11 C -0.117 4.117 12 C -0.200 4.200 13 C -0.129 4.129 14 C 0.371 3.629 15 O -0.428 6.428 16 O -0.265 6.265 17 C 0.062 3.938 18 C -0.037 4.037 19 C -0.196 4.196 20 C -0.113 4.113 21 C -0.133 4.133 22 C 0.426 3.574 23 O -0.406 6.406 24 O -0.317 6.317 25 O -0.058 6.058 26 C -0.140 4.140 27 H 0.099 0.901 28 H 0.133 0.867 29 H 0.157 0.843 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.109 0.891 33 H 0.212 0.788 34 H 0.209 0.791 35 H 0.305 0.695 36 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.036 -11.869 7.728 16.800 hybrid contribution -0.441 0.544 -0.262 0.747 sum -9.476 -11.325 7.466 16.547 Atomic orbital electron populations 1.69862 1.09200 1.30746 1.35349 1.26842 0.95427 1.04922 0.91248 0.85135 0.79663 0.76065 0.78758 1.17487 1.19088 1.19400 1.19879 0.98527 0.91874 1.41862 0.89498 1.17908 0.91714 0.94028 0.90020 1.21510 1.03530 0.92611 1.04549 1.20950 0.95319 0.98028 0.97434 1.20939 0.99891 0.95413 1.03785 1.19033 0.95427 0.96055 1.02367 1.21576 0.82619 0.80872 0.77825 1.90765 1.65859 1.32221 1.53958 1.86614 1.42062 1.34929 1.62887 1.21381 0.86232 0.89542 0.96628 1.22325 0.92329 0.95924 0.93122 1.22100 1.03370 0.92642 1.01442 1.22378 0.93252 1.00245 0.95401 1.21055 1.05703 0.86250 1.00292 1.18711 0.77590 0.83100 0.78041 1.90999 1.66168 1.24008 1.59416 1.84660 1.53038 1.52164 1.41862 1.84089 1.47482 1.25902 1.48279 1.21470 0.98026 0.95832 0.98671 0.90109 0.86719 0.84316 0.85239 0.85090 0.89095 0.78843 0.79050 0.69515 0.87366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.02 10.97 21.83 0.24 -43.78 16 2 C 0.03 1.53 5.14 85.26 0.44 1.97 16 3 Si 0.98 37.89 29.59 68.60 2.03 39.92 16 4 H -0.25 -9.26 7.11 99.48 0.71 -8.55 16 5 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 6 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.49 -25.66 9.05 23.47 0.21 -25.44 16 8 H 0.09 4.27 7.90 -2.91 -0.02 4.25 16 9 C 0.07 3.43 5.57 -21.32 -0.12 3.31 16 10 C -0.20 -9.15 9.78 22.77 0.22 -8.93 16 11 C -0.10 -3.94 10.01 22.18 0.22 -3.71 16 12 C -0.18 -7.41 9.62 22.71 0.22 -7.19 16 13 C -0.13 -5.96 5.87 -20.15 -0.12 -6.07 16 14 C 0.52 22.25 7.90 70.34 0.56 22.81 16 15 O -0.54 -25.03 16.12 19.97 0.32 -24.70 16 16 O -0.35 -11.92 9.44 -56.22 -0.53 -12.45 16 17 C 0.14 3.51 6.00 71.23 0.43 3.94 16 18 C 0.02 0.35 6.95 24.98 0.17 0.53 16 19 C -0.18 -3.18 10.77 22.07 0.24 -2.95 16 20 C -0.09 -1.68 10.62 22.40 0.24 -1.44 16 21 C -0.08 -1.85 7.18 24.04 0.17 -1.67 16 22 C 0.58 11.91 8.30 69.97 0.58 12.49 16 23 O -0.51 -11.98 17.65 19.45 0.34 -11.64 16 24 O -0.50 -8.00 13.44 -56.69 -0.76 -8.76 16 25 O -0.16 -4.17 10.67 -4.95 -0.05 -4.22 16 26 C -0.12 -6.39 8.23 23.02 0.19 -6.20 16 27 H 0.29 14.05 8.30 -92.71 -0.77 13.29 16 28 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 29 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 30 H 0.13 4.60 7.59 -2.91 -0.02 4.57 16 31 H 0.13 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 33 H 0.19 2.33 8.06 -2.91 -0.02 2.31 16 34 H 0.19 2.45 8.06 -2.91 -0.02 2.42 16 35 H 0.44 2.06 9.11 -74.06 -0.67 1.39 16 36 H 0.11 6.28 5.76 -2.91 -0.02 6.26 16 Total: -1.00 -68.43 337.38 5.72 -62.71 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 0.48 Total: 21.47 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 3.65 Total: -18.55 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.24 Total: -43.78 kcal Atomic # 8 Polarization: -61.09 SS G_CDS: -0.68 Total: -61.77 kcal Atomic # 14 Polarization: 37.89 SS G_CDS: 2.03 Total: 39.92 kcal Total: -68.43 5.72 -62.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601077671.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.556 kcal (2) G-P(sol) polarization free energy of solvation -68.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds