Wall clock time and date at job start Tue Mar 31 2020 11:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81401 * 102.99666 * 2 1 4 4 C 1.50703 * 109.47156 * 179.97438 * 3 2 1 5 5 C 1.33637 * 126.03234 * 89.99670 * 4 3 2 6 6 N 1.31785 * 114.49880 * 179.74036 * 5 4 3 7 7 C 1.29030 * 117.12133 * 359.97438 * 6 5 4 8 8 C 1.50701 * 124.91342 * 179.97438 * 7 6 5 9 9 N 1.46503 * 109.46855 * 89.97879 * 8 7 6 10 10 C 1.36940 * 120.00039 * 269.99777 * 9 8 7 11 11 H 1.07996 * 120.00146 * 146.09767 * 10 9 8 12 12 C 1.38810 * 119.99838 * 326.10021 * 10 9 8 13 13 N 1.31616 * 120.00193 * 336.58254 * 12 10 9 14 14 Si 1.86804 * 119.99901 * 156.58641 * 12 10 9 15 15 H 1.48500 * 109.47147 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47525 * 119.99787 * 14 12 10 17 17 H 1.48499 * 109.47024 * 239.99764 * 14 12 10 18 18 C 1.46503 * 119.99988 * 90.00234 * 9 8 7 19 19 C 1.52994 * 109.47128 * 89.50695 * 18 9 8 20 20 C 1.50699 * 109.47000 * 180.02562 * 19 18 9 21 21 O 1.20825 * 119.99750 * 0.02562 * 20 19 18 22 22 O 1.34231 * 120.00036 * 180.02562 * 20 19 18 23 23 S 1.70974 * 110.17051 * 0.02562 * 7 6 5 24 24 H 1.09000 * 109.47181 * 300.00031 * 1 2 3 25 25 H 1.08995 * 109.47197 * 60.00357 * 1 2 3 26 26 H 1.09003 * 109.46819 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47005 * 60.00048 * 3 2 1 28 28 H 1.08998 * 109.47166 * 300.00217 * 3 2 1 29 29 H 1.07999 * 122.75279 * 359.74018 * 5 4 3 30 30 H 1.09000 * 109.47369 * 209.97595 * 8 7 6 31 31 H 1.09000 * 109.47419 * 329.98204 * 8 7 6 32 32 H 0.97003 * 119.99802 * 180.02562 * 13 12 10 33 33 H 1.08998 * 109.47025 * 209.50863 * 18 9 8 34 34 H 1.08999 * 109.46872 * 329.50718 * 18 9 8 35 35 H 1.08998 * 109.47305 * 299.99996 * 19 18 9 36 36 H 1.08999 * 109.47226 * 60.00240 * 19 18 9 37 37 H 0.96703 * 116.99900 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9375 0.0006 5 6 4.5010 2.0260 -1.0797 6 7 5.7832 2.1770 -0.8157 7 6 6.1266 2.2214 0.4273 8 6 7.5387 2.3879 0.9266 9 7 7.8363 3.8138 1.0831 10 6 8.3663 4.5215 0.0374 11 1 8.1029 5.5597 -0.1006 12 6 9.2419 3.9043 -0.8453 13 7 9.9201 2.8424 -0.4650 14 14 9.4578 4.5811 -2.5730 15 1 8.5882 5.7717 -2.7505 16 1 10.8764 4.9686 -2.7792 17 1 9.0800 3.5407 -3.5630 18 6 7.5671 4.4825 2.3585 19 6 8.7991 4.3774 3.2595 20 6 8.5220 5.0648 4.5717 21 8 7.4489 5.5849 4.7663 22 8 9.4672 5.0992 5.5241 23 16 4.7479 2.0625 1.4258 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8030 2.2371 0.8900 28 1 1.8030 2.2371 -0.8899 29 1 4.1136 1.9776 -2.0867 30 1 7.6454 1.8867 1.8886 31 1 8.2320 1.9487 0.2092 32 1 10.5323 2.4114 -1.0818 33 1 7.3383 5.5327 2.1769 34 1 6.7179 4.0049 2.8470 35 1 9.0279 3.3273 3.4411 36 1 9.6484 4.8551 2.7710 37 1 9.2431 5.5519 6.3488 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607401593.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:32 Heat of formation + Delta-G solvation = -32.373928 kcal Electronic energy + Delta-G solvation = -21482.234296 eV Core-core repulsion = 18092.326938 eV Total energy + Delta-G solvation = -3389.907358 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 316.070 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.85719 -39.05523 -36.32380 -35.67800 -32.59523 -32.13840 -30.25455 -29.14906 -28.01190 -25.35760 -24.77562 -23.18499 -21.65970 -20.16217 -18.71066 -17.84820 -17.68495 -16.75931 -16.26098 -16.08193 -15.63368 -14.95184 -14.69325 -14.50632 -14.11250 -13.94006 -13.82134 -13.41525 -13.37747 -13.06892 -12.86890 -12.54803 -12.43632 -12.15225 -11.58984 -11.32479 -11.21096 -10.89686 -10.85751 -10.62007 -10.36594 -10.27508 -10.22470 -10.16249 -10.00330 -8.87176 -8.70594 -8.63050 -8.21561 -7.77783 -6.95568 -6.00338 -3.52202 0.92275 1.78128 1.97680 2.36142 2.51101 2.58595 3.34614 3.39503 3.44940 3.48566 3.57731 4.40891 4.73870 4.91248 4.93793 4.95206 5.01968 5.23692 5.34645 5.39830 5.48373 5.59198 5.72032 5.88409 5.99188 6.08724 6.24352 6.35864 6.55167 6.69325 6.76633 6.87506 7.33691 7.68606 8.20126 8.26855 8.51120 8.92186 9.57224 10.07657 11.02083 Molecular weight = 316.07amu Principal moments of inertia in cm(-1) A = 0.010763 B = 0.004399 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2600.802684 B = 6363.887679 C = 8498.860511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.257 6.257 3 C 0.011 3.989 4 C -0.255 4.255 5 C 0.074 3.926 6 N -0.472 5.472 7 C 0.096 3.904 8 C 0.198 3.802 9 N -0.560 5.560 10 C -0.266 4.266 11 H 0.067 0.933 12 C 0.028 3.972 13 N -0.878 5.878 14 Si 0.903 3.097 15 H -0.276 1.276 16 H -0.290 1.290 17 H -0.283 1.283 18 C 0.157 3.843 19 C -0.131 4.131 20 C 0.479 3.521 21 O -0.527 6.527 22 O -0.523 6.523 23 S 0.079 5.921 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.164 0.836 30 H 0.053 0.947 31 H 0.135 0.865 32 H 0.260 0.740 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.098 0.902 36 H 0.111 0.889 37 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.251 -2.712 5.494 12.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S -0.029 6.029 3 C -0.139 4.139 4 C -0.378 4.378 5 C -0.083 4.083 6 N -0.186 5.186 7 C -0.186 4.186 8 C 0.067 3.933 9 N -0.278 5.278 10 C -0.395 4.395 11 H 0.085 0.915 12 C -0.174 4.174 13 N -0.519 5.519 14 Si 0.732 3.268 15 H -0.201 1.201 16 H -0.217 1.217 17 H -0.209 1.209 18 C 0.030 3.970 19 C -0.171 4.171 20 C 0.322 3.678 21 O -0.416 6.416 22 O -0.334 6.334 23 S 0.334 5.666 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.118 0.882 27 H 0.106 0.894 28 H 0.112 0.888 29 H 0.181 0.819 30 H 0.071 0.929 31 H 0.152 0.848 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.116 0.884 36 H 0.129 0.871 37 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -10.403 -3.710 5.786 12.469 hybrid contribution -1.334 1.609 -1.256 2.438 sum -11.737 -2.102 4.530 12.755 Atomic orbital electron populations 1.23389 0.95147 1.06323 1.04713 1.87345 1.06029 1.11548 1.98019 1.21463 0.92756 0.94301 1.05399 1.24802 0.97973 1.18576 0.96483 1.21756 0.87871 0.99356 0.99278 1.66391 1.15941 1.16986 1.19260 1.29517 1.02140 0.96567 0.90335 1.20040 0.85732 0.87118 1.00398 1.43840 1.69711 1.06192 1.08080 1.19082 1.20662 0.96019 1.03764 0.91547 1.25037 0.94740 0.97871 0.99791 1.69887 1.24717 1.22621 1.34658 0.86249 0.77106 0.78770 0.84712 1.20104 1.21704 1.20930 1.20837 0.92363 0.98175 0.85589 1.22317 1.05324 1.01469 0.87985 1.24294 0.80999 0.76601 0.85878 1.90666 1.25922 1.44397 1.80604 1.84649 1.47047 1.73516 1.28236 1.83848 1.01746 1.68360 1.12653 0.90651 0.90610 0.88215 0.89425 0.88750 0.81884 0.92862 0.84784 0.93009 0.92264 0.93519 0.88355 0.87086 0.74370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 10.76 101.05 1.09 0.04 16 2 S -0.26 -3.22 22.36 -107.50 -2.40 -5.62 16 3 C 0.01 0.13 6.47 36.01 0.23 0.36 16 4 C -0.26 -4.11 5.86 -35.92 -0.21 -4.32 16 5 C 0.07 1.33 11.25 -19.18 -0.22 1.11 16 6 N -0.47 -10.21 10.54 -11.86 -0.13 -10.34 16 7 C 0.10 1.98 6.97 -13.45 -0.09 1.89 16 8 C 0.20 4.34 5.87 -5.19 -0.03 4.31 16 9 N -0.56 -12.74 2.44 -174.61 -0.43 -13.16 16 10 C -0.27 -6.77 9.48 -15.06 -0.14 -6.91 16 11 H 0.07 1.73 7.93 -52.49 -0.42 1.31 16 12 C 0.03 0.71 4.94 -17.43 -0.09 0.63 16 13 N -0.88 -23.19 11.34 55.49 0.63 -22.56 16 14 Si 0.90 21.22 29.61 -169.99 -5.03 16.19 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 18 C 0.16 3.11 4.96 -4.04 -0.02 3.09 16 19 C -0.13 -2.28 6.13 -27.89 -0.17 -2.45 16 20 C 0.48 7.68 8.33 36.01 0.30 7.98 16 21 O -0.53 -9.69 16.74 -18.75 -0.31 -10.01 16 22 O -0.52 -6.79 13.42 -39.26 -0.53 -7.32 16 23 S 0.08 1.35 23.18 -107.50 -2.49 -1.14 16 24 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.10 0.71 8.14 -51.92 -0.42 0.29 16 27 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.16 2.52 8.06 -52.49 -0.42 2.10 16 30 H 0.05 1.05 8.07 -51.93 -0.42 0.63 16 31 H 0.14 3.37 5.33 -51.93 -0.28 3.10 16 32 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 33 H 0.06 1.22 7.99 -51.93 -0.42 0.80 16 34 H 0.05 0.89 8.03 -51.93 -0.42 0.47 16 35 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 36 H 0.11 2.06 8.14 -51.93 -0.42 1.63 16 37 H 0.40 3.27 9.10 45.56 0.41 3.68 16 LS Contribution 351.80 15.07 5.30 5.30 Total: -1.00 -30.02 351.80 -8.79 -38.80 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -4.05 Total: 4.12 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: 0.65 Total: 5.73 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.08 Total: -46.06 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.84 Total: -17.33 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Atomic # 16 Polarization: -1.86 SS G_CDS: -4.90 Total: -6.76 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.02 -8.79 -38.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607401593.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.431 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds